mRNA_P-littoralis_Contig170.37.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: D8LRA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI) HSP 1 Score: 461 bits (1187), Expect = 1.080e-148 Identity = 326/460 (70.87%), Postives = 352/460 (76.52%), Query Frame = 2
Query: 26 GVGRGLAATKPAWMTNGSVTSSLGGLSGRGAQQESSSHHNINGRKGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNRSGDRRNGV--DRAATTGGGVXXXXXXXXANELAARALLKSIAGGI--GAAPAGRXXXXGSTMPAWMTHPGGPGGLQESSSGSKAVGGVDLKERSSPPRFTRSSQPLPPEPTMTDGGIAGRGGGRGWERNGXXXXXXXXXXXXXXXXXXXNGRRTEPLPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALSMKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEEDPRDAPVITNGGXXXRXXXXXGMRGVYREPPRG----AVGRGVGATMPAWMTDLGLADKLGKKSHRK 1381
GVGRGLAATKPAWMT+GSV SLGGL+GRG SS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +RS DRRNG D AA +GG AN++A+RA+ ++ AGG AGRXXXXGST+PAWMTHPGGPGGLQES G + G + SPPRF RS+ PLPPEPTM +GGI G GR XXXXXXXXXXXXXXXXXXX E LP VFSVHKGEVVKTETFGAF+KLDGYRKHGLVHCSQMASYRVEDVTD+CK GDTV+ KVIEVT+GA+PREQRIALSMK+VNQADG DLDPSNAEAETD QR++P GG DRAPV+LEAVFNTTCTKCGV GHLSIDCFSRGGKKY+LVDEEDPRD NG GMRGV+REPP G A GRG GATMPAWM DLGL DKL KKSHRK
Sbjct: 4 GVGRGLAATKPAWMTSGSVAPSLGGLNGRGGPASSSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRSDDRRNGGGRDTAARSGG-------RSNANDVASRAVQQAFAGGXXXNVPAAGRXXXXGSTIPAWMTHPGGPGGLQESDRGDRGDGRPSKDK--SPPRFARSAGPLPPEPTMANGGITG---GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRD-----NGRGGAGGGTGNGMRGVHREPPHGGGALAGGRGRGATMPAWMNDLGLVDKLNKKSHRK 446
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A835YH79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH79_9STRA) HSP 1 Score: 170 bits (430), Expect = 6.550e-41 Identity = 105/272 (38.60%), Postives = 138/272 (50.74%), Query Frame = 2
Query: 734 EPLPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVK------------------------------------VIEVTEGAEPREQRIALSMKMVNQADGTDLDPSNAEAETDLQRRKPTGG------------SDRAPVKLEAVFNTTCTKCGVQG-------------------HLSIDCFSRGGKKYDLVDEEDPRDAPVITNGGXXXRXXXXXGMRGVYREP----PRGAVGRGVGATMPAWMT 1336
+ LPA++SVH GEV + FG FV G+RKHGLVH SQ+A YRVEDV D GD V+VK VI+V EGA PRE ++A+SMK+V+Q+ G DLDP+N EA+ + RR GG + + P++L AVFNT C+KCG H+S+DCFSRGG+KY+LV E+ GG GM+GV + P P ++GRG AT+P+WMT
Sbjct: 283 DTLPALYSVHHGEVASVQDFGCFVSAPGHRKHGLVHKSQLAQYRVEDVADAVAVGDKVWVKYQXXXXXXXXXXXXXXXXXXKGGXXXXXXXXXXXXKVIDVQEGATPRESKVAMSMKLVDQSTGKDLDPTNEEAQDEAARRMGGGGXRXXXXXXXXXXAPKGPIELGAVFNTVCSKCGAXXXXXXXXXXXXXXXXXXXXXHMSVDCFSRGGQKYELVTED--------LEGGEPA-----GGMKGVAKPPDVPPPSVSMGRGKAATLPSWMT 541
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: UPI001C0580E8 (nucleolar protein of 40 kDa n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C0580E8) HSP 1 Score: 150 bits (379), Expect = 2.330e-37 Identity = 77/154 (50.00%), Postives = 105/154 (68.18%), Query Frame = 2
Query: 740 LPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1195
LP +FS+ KGEVV +T+GAFV+L GY+K GLVH S+M++ RVE+ ++I G+ V++KVI G E + +++ LS MK VNQ G DLDP+N AE D +RR+ R + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED
Sbjct: 17 LPPLFSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEKVWIKVI----GREIQGEKVKLSFSMKSVNQGTGQDLDPNNVMAEQDARRRRMFKDETRNKITLEAVLNTTCSKCGCRGHFTKDCFSTPGSQYALLPEED 166
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A3P8WCJ4_CYNSE (Zinc finger CCHC-type containing 17 n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WCJ4_CYNSE) HSP 1 Score: 149 bits (377), Expect = 4.460e-37 Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 2
Query: 734 EPLPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEEDPRD 1204
E LP ++S+ KGEVV +T+GAFV+L GYRK GLVH S+M++ RVE ++I G+ V++KVI G E R ++ +S MK VNQ G DLDP+N AE D +RR+ + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED ++
Sbjct: 16 EGLPPIYSILKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSASRVEKASEIVDVGEQVWIKVI----GREIRGDKVKMSFSMKAVNQGTGRDLDPNNVNAEQDARRRRQFRDQTGNKITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEEDDKE 170
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A1A7YY55_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YY55_9TELE) HSP 1 Score: 147 bits (372), Expect = 6.110e-37 Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 2
Query: 740 LPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEE 1192
LP ++S+ KGEVV +T+GAFV+L GYRK GLVH S+M++ RVE ++I G+ V++KVI G E + +++ LS MK VNQ G DLDP+N +AE D +RR+ + LEAV NTTC+KCG +GH + DCFS G +Y LV EE
Sbjct: 17 LPPMYSIAKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSATRVESASEIVDVGEQVWIKVI----GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALVPEE 165
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A3B4X9C6_SERLL (Zinc finger CCHC-type containing 17 n=2 Tax=Carangaria TaxID=1489904 RepID=A0A3B4X9C6_SERLL) HSP 1 Score: 148 bits (373), Expect = 6.180e-37 Identity = 77/154 (50.00%), Postives = 103/154 (66.88%), Query Frame = 2
Query: 740 LPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1195
LP ++S+ KGEVV +T+GAFV+L GY+K GLVH S+M++ RVE+ ++I G+ V++KVI G E R ++ LS MK VNQ G DLDP+N AE D +RRK + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED
Sbjct: 16 LPPLYSISKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEQVWIKVI----GKEIRGDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDARRRKQFRDQTGNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEED 165
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A1S3Q0U9_SALSA (nucleolar protein of 40 kDa n=11 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3Q0U9_SALSA) HSP 1 Score: 149 bits (377), Expect = 7.720e-37 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 2
Query: 740 LPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEE 1192
LPA++S+ KGEV +T+GAF+K+ GYRK GLVH S++++ RVE+V ++ G+ V++KVI G E R+ ++ LS MK VNQ G DLDP+N AE D +RR+ + LEAV NTTC KCG +GH + DCFS G +YDL+ EE
Sbjct: 17 LPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVI----GREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGRRITLEAVLNTTCKKCGCKGHFAKDCFSAPGLQYDLIPEE 165
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A3B3ZR79_9GOBI (Zinc finger, CCHC domain containing 17 n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B3ZR79_9GOBI) HSP 1 Score: 149 bits (375), Expect = 9.000e-37 Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = 2
Query: 722 GRRTEP-----LPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1195
G + EP LP +FS+ KGEVV +T+GAFV+L GY+ GLVH S+M++ RVE+ ++I G+ V++KVI G E +++ LS MK VNQ G DLDP+N A+ D +RRK R + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED
Sbjct: 6 GSKAEPSGLDGLPPLFSISKGEVVSVQTYGAFVRLPGYKNQGLVHVSEMSASRVENPSEIVDVGEQVWIKVI----GREIHGEKVKLSFSMKAVNQGTGRDLDPNNVMADQDARRRKQFKDGTRNKITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYTLLPEED 166
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A6G0HS78_LARCR (Nucleolar protein of 40 kDa n=4 Tax=Eupercaria TaxID=1489922 RepID=A0A6G0HS78_LARCR) HSP 1 Score: 149 bits (375), Expect = 1.010e-36 Identity = 78/156 (50.00%), Postives = 104/156 (66.67%), Query Frame = 2
Query: 734 EPLPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1195
E LP +FS+ KGEVV +T+GAFV+L GY+K GLVH S+M++ RVE+ ++I G+ V++KVI G E R ++ LS MK VNQ G DLDP+N AE D +RR+ + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED
Sbjct: 13 EGLPPIFSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEQVWIKVI----GREIRGDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDSRRRRQFRDHTGNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEED 164
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Match: A0A4W6CXV4_LATCA (Zinc finger CCHC-type containing 17 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6CXV4_LATCA) HSP 1 Score: 149 bits (375), Expect = 1.120e-36 Identity = 81/166 (48.80%), Postives = 107/166 (64.46%), Query Frame = 2
Query: 719 NGRRTEP-----LPAVFSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKAGDTVFVKVIEVTEGAEPREQRIALS--MKMVNQADGTDLDPSNAEAETDLQRRKPTGGSDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1195
+G +EP LP +FS+ KGEVV +T+GAFV+L GYRK GLVH S+M++ RVE+ ++I G+ V++KVI G E ++ LS MK VNQ G DLDP+N AE D +RRK + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED
Sbjct: 5 DGPASEPAGLDGLPPLFSISKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSASRVENASEIVDVGEQVWIKVI----GREIHGDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDARRRKQFRDQTGNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEED 166 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.37.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig170.37.2 >prot_P-littoralis_Contig170.37.2 ID=prot_P-littoralis_Contig170.37.2|Name=mRNA_P-littoralis_Contig170.37.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=635bp MTNGSVTSSLGGLSGRGAQQESSSHHNINGRKGRSRSRSRSRRRDGDGGRback to top mRNA from alignment at P-littoralis_Contig170:82017..90478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig170.37.2 ID=mRNA_P-littoralis_Contig170.37.2|Name=mRNA_P-littoralis_Contig170.37.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8462bp|location=Sequence derived from alignment at P-littoralis_Contig170:82017..90478- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig170:82017..90478- >mRNA_P-littoralis_Contig170.37.2 ID=mRNA_P-littoralis_Contig170.37.2|Name=mRNA_P-littoralis_Contig170.37.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1905bp|location=Sequence derived from alignment at P-littoralis_Contig170:82017..90478- (Pylaiella littoralis U1_48)back to top |