mRNA_P-littoralis_Contig170.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.27.1
Unique NamemRNA_P-littoralis_Contig170.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A6H5L0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J1_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 1.610e-80
Identity = 179/339 (52.80%), Postives = 208/339 (61.36%), Query Frame = 1
Query:  598 GSPASPAPFFRFGLGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRS-------------------------RGHGGNPG-------------GGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
            G   + + FF+FGLGLHPW AHARS+ WLRDLT LLE+HP AL   +GLDKVARTPDTRRVEWDDQ+E       LAAR+SRPVSVHCVKA+GK+VD L+ +G      + S                         R   G  G             GG  C GGG GD +  I R + G   +GG      + +    +GGER             + RLPPRIALHSFTGSVEVAKDI R+G     G G +V+FGFSAAVNMRGDRE +RL+DVL+VVPDSRILIETDR+AP       A EELLRVC AIAEAKGVS +EAA LA+ NA RFLA
Sbjct:   50 GESTTDSSFFKFGLGLHPWYAHARSKEWLRDLTALLEQHPHAL---VGLDKVARTPDTRRVEWDDQME-------LAARMSRPVSVHCVKAHGKLVDCLRGSGLDGPATHNSXXXXXXXXXXXXXXXXXXXXXADKGRAQSGVEGXXXXXSVLAEGGIGGDFCRGGG-GDGL--IER-KTGCPPAGG------QKEGHNGLGGER------------KRWRLPPRIALHSFTGSVEVAKDITRLGAR--RGYGSEVFFGFSAAVNMRGDRETKRLVDVLKVVPDSRILIETDRRAP----AREAVEELLRVCDAIAEAKGVSAEEAAALASGNAARFLA 350          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: D8LRA6_ECTSI (Cut9 interacting protein Scn1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA6_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.570e-56
Identity = 121/218 (55.50%), Postives = 139/218 (63.76%), Query Frame = 1
Query:  658 AHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLM 1311
            AHARSE WLRDLT LLE+HP AL+GEIGLDKVARTPDTRRVEWDDQLEVFQ+QM LAAR+SRPVSVHCVKA+GK+VDYL+   E KT ++        P GG                                 + +    +GGE       GK     + RLPPRIALHSFTGSVEVAKDI R+G       G +V+FGFSAAVNMRGDRE +RL+
Sbjct:   26 AHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQAQMELAARMSRPVSVHCVKAHGKLVDYLRGLMERKTGRS--------PAGG---------------------------------QKEEYNGMGGE-------GK-----RWRLPPRIALHSFTGSVEVAKDITRLGAR--RDYGSEVFFGFSAAVNMRGDRETKRLV 188          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A7S1XY07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY07_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.720e-32
Identity = 97/289 (33.56%), Postives = 133/289 (46.02%), Query Frame = 1
Query:  637 LGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLR-VCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
             G+HPW AH    GW+  L   L  HP ALLGEIGLDK ARTP+TRR E++ Q EVF +Q+ LAA L RPVSVHCV++ GK+   ++                                          GAA++G                                   LPP IALHS+  S +     + +          ++Y GFS A+N R + +  +L++ + VVPD R+L+E+D + P      +  EE LR +C   AEAKG S++E A     NA RF+A
Sbjct:   43 FGVHPWFAHRAENGWIERLRLRLASHPAALLGEIGLDKAARTPETRRCEYEAQQEVFAAQLALAAELRRPVSVHCVRSVGKLFGMMEA-----------------------------------------GAAAAG-----------------------------------LPPAIALHSYGSSPDWIPRYLALPT--------ELYVGFSYAINGR-ENQREKLLENIAVVPDDRLLLESDLECP------LDIEEHLRAMCAIFAEAKGWSLEETAERTWANAERFVA 240          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: L8GPB7_ACACA (TatDrelated DNase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPB7_ACACA)

HSP 1 Score: 120 bits (300), Expect = 7.620e-27
Identity = 89/270 (32.96%), Postives = 125/270 (46.30%), Query Frame = 1
Query:  637 LGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQV----YFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAE 1434
             G+HP+ AH  +EGWL +L   L  +PRA++GEIGLDK A TPDT R E+D Q   F +Q  LA  L RP+S HCV+A+G ++   +                                                     L   +  RS  GE +  R +          LPP I +HSF G+V   + ++       +GR G +    YF FS  VNMR    A + +DV++ VP+ R+LIE+D+ +P A G     E+L RVC  +AE
Sbjct:   36 FGVHPYFAHRLAEGWLEELREKLVANPRAIVGEIGLDKAAITPDTARNEYDAQTTAFTAQFDLAVELQRPISFHCVRAFGHVMTLFRQH--------------------------------------------------ALRYDQLMRS--GEEDKARGT----------LPPAIIMHSFAGTVGGMESLLS-----NKGRKGNIQERLYFSFSKIVNMR----APKTIDVIKAVPEDRLLIESDQHSP-AHGE----EDLSRVCEIVAE 229          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: W7TX83_9STRA (Uba thif-type nad fad binding fold domain deoxiribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX83_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.710e-26
Identity = 88/291 (30.24%), Postives = 124/291 (42.61%), Query Frame = 1
Query:  634 GLGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLAHA 1506
            GLG+HPW   +   GW   L   LE  P  ++GEIGLDK     ++ +  W++Q ++F+ QM LAA L RPVSVHCV+AYG + ++LK                                                        S AE                       LPP +A HS+TGS+++A   +R+     E   G V+FGFSAAV +R      +L  VL ++P   +L+E+D    EA         +  +C  +AE KG+     A +  KNA RFL  A
Sbjct:   99 GLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAG---ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKG------------------------------------------------------RSAAE-----------------------LPPSVAFHSYTGSLDMAGAFLRL-----EHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGA-----MNTICDVVAEVKGMERNVLAEVTTKNAERFLRRA 299          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A7S1AAK2_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AAK2_NOCSC)

HSP 1 Score: 114 bits (284), Expect = 4.700e-26
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  634 GLGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTV 921
            G G+HPW AHA +EGWL  L  LLE HP AL+GE+GLDK+ RT +TR+ E+  Q  VFQ+Q+ LAA L RPVSVHCV+++GK+ + L+   ++ ++
Sbjct:   17 GFGVHPWYAHAVTEGWLERLRALLEHHPHALVGEVGLDKIFRTKETRKCEYQAQQVVFQAQLKLAADLCRPVSVHCVQSWGKMAEILEQRAKAGSL 112          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A1Y2CLQ2_9FUNG (Metallo-dependent hydrolase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CLQ2_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 9.850e-23
Identity = 97/296 (32.77%), Postives = 137/296 (46.28%), Query Frame = 1
Query:  637 LGLHPWSAHARSE--GWLRDLTTLLEEHPRALLGEIGLDKVARTPDTR-RVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIV----DYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETD-RQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
             GLHPW  H  ++    L +L   L +HP AL+GEIGLD VA  P+T  + E+D QL  F  Q  LAA L RPVSVH V  YGK+     D L+D  +  + K R R                       +++  D                          +E D   T   + ++ PP I LHS++GS E  ++I+R           + YF FS  VN R   +  R+ + +  VPD RILIE+D   A    G  + A +L      +A+AKG S+++AA+    NA+RFL+
Sbjct:   28 FGLHPWFLHQLTDPDAALAELRNYLLKHPSALVGEIGLDGVATHPNTTTKYEFDQQLNYFTKQWNLAAELRRPVSVHAVGCYGKLEAFFQDSLRDVPKDLSRKQRDR-----------------------LKKDFD-------------------------YVEEDP--TLHPSLKKWPPAIMLHSYSGSTESIRNILRYPSTIST----RFYFSFSHFVNSRTPFD--RMKEKICAVPDDRILIESDLNDARVVDGACMLALDL------VAKAKGWSLEDAAIRTGANALRFLS 261          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A507DYG5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DYG5_9FUNG)

HSP 1 Score: 107 bits (268), Expect = 8.890e-22
Identity = 92/294 (31.29%), Postives = 131/294 (44.56%), Query Frame = 1
Query:  637 LGLHPWSAHA----RSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRV-EWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKD-AGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSG-GDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFL 1497
             G+HPW AH      S      L  +L  HP AL+GEIG+D VA+   T  +  +D QL VF++Q+ LA R+ RPVSVH V+A+G +VD +++ AG+ +  +N  +                         R  D   + G  D                       G +       +PP I  HS++GS E  + ++ +  G     G + YF FS  VN R  +      D +R VPD RILIE+D    +     V        C  +AEAKG ++KE A    +NA RFL
Sbjct:   73 FGVHPWFAHTVPTPPSASAFTSLERILASHPGALVGEIGIDSVAKDRTTGELYPFDQQLAVFRAQLALAGRMGRPVSVHTVRAHGCLVDVMREMAGKRQKKRNWKK------------------------ERELDRFYTQGDSDXXXXXXXXXXXXXXXXXXXXVSRGAS-------IPPAIMHHSYSGSTETIRALVSLPNG----MGARFYFSFSTGVNGRSPKTT----DHIRAVPDDRILIESDLHDAQQIDAAVN-----DACRMVAEAKGWTMKETAERTRRNAERFL 322          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A1Y1YH75_9FUNG (Metallo-dependent hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YH75_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 9.150e-22
Identity = 83/292 (28.42%), Postives = 122/292 (41.78%), Query Frame = 1
Query:  634 GLGLHPWSAHARSEG--WLRDLTTLLEEHPRALLGEIGLDKVARTPDT-RRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
            G G+HPW A    E   W   L   LE+H  A+LGEIGLDK+A  P T  R     QLE+FQ Q  LAA L+R VSVHCV+++G ++D  +                                                                                 +  PP+I LHS++GS E+AK  +++ +      G + YF FS  VN +     ++L+D L+V+P +R+L+E+D  A E+       EE+  + G I   +G  V E   +  KN+  F +
Sbjct:   38 GFGVHPWYAEGMKESDLWEEKLKQYLEKHENAVLGEIGLDKIATDPKTGERYHLPTQLEIFQRQFALAASLNRVVSVHCVQSHGHLLDCFRQL-----------------------------------------------------------------------------KPEEFPPKIMLHSYSGSHEIAKAFLKLPKK----VGARFYFSFSKLVNSK----TKKLVDSLQVIPRNRVLLESD--AHESLKVDGVMEEICNIIGDIWGCEGAEVAE---ITYKNSKEFFS 239          
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A0L0H628_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H628_SPIPD)

HSP 1 Score: 106 bits (265), Expect = 1.550e-21
Identity = 86/296 (29.05%), Postives = 138/296 (46.62%), Query Frame = 1
Query:  637 LGLHPWSAH--------ARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTR-RVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFL 1497
             G+HPW AH          +  W R+L   L  HP AL+GEIG+D  AR  +T  +     Q+ +FQ+Q+ LAA L RPVS+H V+ +GK+++ +++   + T++ +S                                           E+ +  S GG       +G+ R  +   LPP++  HSF+GS ++ + ++R+ +G G     + YF FS  +N R  +   R+    R VPD RILIE+D     A  +      +L  C  +A+AKG ++++ A     NA  FL
Sbjct:   78 FGIHPWFAHHTDGPPKLEETAAW-RNLREQLTSHPHALVGEIGIDGAARDRNTNIKYPMPHQVAIFQAQLALAAELRRPVSIHTVQCHGKLLEIMREL--ALTMRPKSS------------------------------------------EALSNESSGG-------TGRYRVPDP--LPPKMMHHSFSGSPDIVRALLRLPKGVGR----RFYFSFSVGINGRSLKTVERI----RAVPDDRILIESDLHDAAAIDSG-----MLGACKLVADAKGWTLEQTAQKTGTNAKEFL 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0J1_9PHAE1.610e-8052.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRA6_ECTSI1.570e-5655.50Cut9 interacting protein Scn1 n=1 Tax=Ectocarpus s... [more]
A0A7S1XY07_9STRA8.720e-3233.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
L8GPB7_ACACA7.620e-2732.96TatDrelated DNase, putative n=1 Tax=Acanthamoeba c... [more]
W7TX83_9STRA1.710e-2630.24Uba thif-type nad fad binding fold domain deoxirib... [more]
A0A7S1AAK2_NOCSC4.700e-2653.13Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A1Y2CLQ2_9FUNG9.850e-2332.77Metallo-dependent hydrolase n=1 Tax=Rhizoclosmatiu... [more]
A0A507DYG5_9FUNG8.890e-2231.29Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A1Y1YH75_9FUNG9.150e-2228.42Metallo-dependent hydrolase n=1 Tax=Basidiobolus m... [more]
A0A0L0H628_SPIPD1.550e-2129.05Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:62533..68104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRA6
PFAMsTatD_DNase
Model size2351
Max annot lvl2759|Eukaryota
KEGG koko:K03424
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.53e-59
EggNOG OGsCOG0084@1|root,KOG3020@2759|Eukaryota
Descriptionhydrolase activity, acting on ester bonds
Cds size1470
COG categoryL
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.27.1prot_P-littoralis_Contig170.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 62593..67283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.7452977-UTR-P-littoralis_Contig170:62532..625921680789823.7452977-UTR-P-littoralis_Contig170:62532..62592Pylaiella littoralis U1_48UTRP-littoralis_Contig170 62533..62592 +
1680789823.9111702-UTR-P-littoralis_Contig170:67283..681041680789823.9111702-UTR-P-littoralis_Contig170:67283..68104Pylaiella littoralis U1_48UTRP-littoralis_Contig170 67284..68104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.755314-CDS-P-littoralis_Contig170:62592..630171680789823.755314-CDS-P-littoralis_Contig170:62592..63017Pylaiella littoralis U1_48CDSP-littoralis_Contig170 62593..63017 +
1680789823.7654083-CDS-P-littoralis_Contig170:63488..636561680789823.7654083-CDS-P-littoralis_Contig170:63488..63656Pylaiella littoralis U1_48CDSP-littoralis_Contig170 63489..63656 +
1680789823.7741303-CDS-P-littoralis_Contig170:64015..641011680789823.7741303-CDS-P-littoralis_Contig170:64015..64101Pylaiella littoralis U1_48CDSP-littoralis_Contig170 64016..64101 +
1680789823.7874005-CDS-P-littoralis_Contig170:64667..647231680789823.7874005-CDS-P-littoralis_Contig170:64667..64723Pylaiella littoralis U1_48CDSP-littoralis_Contig170 64668..64723 +
1680789823.7956238-CDS-P-littoralis_Contig170:65375..657491680789823.7956238-CDS-P-littoralis_Contig170:65375..65749Pylaiella littoralis U1_48CDSP-littoralis_Contig170 65376..65749 +
1680789823.8040016-CDS-P-littoralis_Contig170:66165..662071680789823.8040016-CDS-P-littoralis_Contig170:66165..66207Pylaiella littoralis U1_48CDSP-littoralis_Contig170 66166..66207 +
1680789823.8132699-CDS-P-littoralis_Contig170:66553..666541680789823.8132699-CDS-P-littoralis_Contig170:66553..66654Pylaiella littoralis U1_48CDSP-littoralis_Contig170 66554..66654 +
1680789823.8266034-CDS-P-littoralis_Contig170:67065..672831680789823.8266034-CDS-P-littoralis_Contig170:67065..67283Pylaiella littoralis U1_48CDSP-littoralis_Contig170 67066..67283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.27.1

>prot_P-littoralis_Contig170.27.1 ID=prot_P-littoralis_Contig170.27.1|Name=mRNA_P-littoralis_Contig170.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=490bp
MSMRWAPYLMGTVLIDTHCHVHVSCDPIAAGRTADTPQRCCSDDRETSTH
DEPKDHNNINFSSSSSTSSNERKTGGVLVRNDLTRVGNADEERRKSTTVP
LPDVVRITMGFAEEDWAAAFRYGYAAPCATSEAADHAVDNLSCARSIQTA
RTTPESSGMEDHHQPFRLEMSATGAGNSGGSPASPAPFFRFGLGLHPWSA
HARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQ
SQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGG
GKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLER
DSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFG
FSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELL
RVCGAIAEAKGVSVKEAAVLANKNAVRFLAHARSHEPLC*
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mRNA from alignment at P-littoralis_Contig170:62533..68104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.27.1 ID=mRNA_P-littoralis_Contig170.27.1|Name=mRNA_P-littoralis_Contig170.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5572bp|location=Sequence derived from alignment at P-littoralis_Contig170:62533..68104+ (Pylaiella littoralis U1_48)
GCAGGAGGGACAAGCAAGGAGGCAGCAGAGAACCGAGCCATGTGAGAGAC AGACAGCACAATGAGCATGCGATGGGCACCATATTTGATGGGAACTGTGC TGATAGACACACACTGCCACGTCCACGTTTCGTGCGACCCAATTGCCGCT GGGAGAACAGCAGACACACCACAGCGTTGCTGTAGTGACGACAGGGAAAC ATCGACACATGATGAGCCTAAGGACCATAACAACATCAACTTCAGCAGCA GCAGCAGCACCAGCAGCAATGAACGTAAGACAGGAGGAGTACTGGTACGC AATGACCTGACTCGTGTGGGGAACGCCGACGAAGAACGTAGAAAATCAAC AACCGTGCCGCTGCCCGATGTGGTGCGCATCACGATGGGTTTTGCCGAAG AGGATTGGGCCGCTGCCTTCCGGTACGGGTACGCTGCTCCTTGTGCCACT TCTGAAGCAGCAGATCATGCCGTGGACAATCTCAGGTACAGCCACCACAC GAACGCGTTCGTCGACGTCGTTGTCGTCGTCGTCGCTGCCGTCGTCGCAG TAACAGACAGCAGACCTATGATACAGCAGCAGCACAGCAGAGGAGCTGCC GCGCTTTGGTTGCAGCGCGAAAAAATGTTCTCGAACTGGGACCCAGGAGG ATGGAGCTCGAAACTCCGCCAGAGATATCATGTGTTCTACTTCGAAGTAG TTGATATGATACGAAGTACCAGGTTGAGCCGTGTACTCTGTAGTATTGCC GGACTCACAGGCCGTGTTGTTTTTCACGTATTATAGTATTTTTCTTTATT CGGGCCCCAAACCCCACAGTCAAAACTTGACAGCTCAAATTTATACTTCA AGTATTTCATTGCGAACAAGGAACAACAAGGTGGTTCGCATAATCTCGCC GCGTTTTCCGTCCATTATACTGTACCGCGCGTGTCACGTGTATGATCTGC TGTAAGCTGTGCGCGTAGTATACAGACAGCACGAACAACACCAGAGAGTT CAGGAATGGAGGACCACCACCAGCCATTTCGTCTCGAGATGAGCGCTACT GGGGCAGGCAATAGCGGCGGTTCTCCTGCTTCTCCTGCTCCCTTTTTTCG GTTTGGGCTGGGACTACACCCATGGTGTGTTGATACTTCGTACATGTGTA TGACAAGAACATAACTTTATGATTGTCTATGTGTACAGCAGTGCACCATA ACAATGATACGAAGTATATACTTCGAAGTACATATGAGCATGCGTATGAC TTTCCCCCCACATCACACCCACATAGAGGTGTGGCGGCGGCGGCGGCTGC GGCGGCGGCGGCTGGTAGTAGGTTGTGATGCTGCTCTGTTGCTGTTGACG TGCTTCAACGATTTGCTGCTGGCGCTGGTATTGACGCCGCCGCCGCCGCC GCTGCTGCTGCTGCTCCCGTTACTTTCATTGTCATATCATGGTGATGCTG GTGGTGCTGATCGTTCTTGCCACATCCATGAAGGAGCGCCCACGCGAGGT CCGAGGGGTGGCTTCGAGACCTCACAACGCTCCTCGAAGAGCACCCTCGC GCCCTCCTGGGCGAAATCGGTAAGAAACGAGGAGAAATACTAATACTGCA CCGGTAGGCAGCTCGCACATGACACTTGTGATTGGCGTACCGGTACGTAC CCTTCTCGCGACATAACTTGAGGGAAACGATCCTCCAAAAGGAGGGTAGG GAGAAAAAAAAAAAAGAGGTGTAACCTTCCTCCATGTGTGCGTCAACCCG ACTGACACATACGCCCGCGTACTGCTGTTTACAGAAAGGTGACGCCTGGC GTCCAGAATAACGGGTAAATGGGAGACAACACACGCACATACACACCTTA CCAGATCAGGCGTGCTCTATAATATGAACCCGCAACTACCCGCAAACGAA GTACTTGTCTGTGCGGGGATGCACACACGCACACATACGTGCACCGTAAT GTGGGGCGACTCGATTGAACTGGTTTCAGTTCCGCTGCCTGTTACTCACG TGCGCGCATCACACCTTTCCCGTCGAATCTAGTATACGCTCGTGATGTAC CTCGATTTTGTTTTTCGTGCAAAAGTGTGTGTGTGTGTGTTTTCTCCTGT TACCTGTACGTCTTTTTGTTCCCTCCATGTTGCAGGGCTAGACAAGGTGG CCCGCACTCCTGATACAAGGAGGGTGGAATGGGACGACCAGGCAAGCGGG AGGCGCGATGGGCCAGAGCGCAGGCCCGTTGCTGCTTCGTCGTTTTGCAG GCACACTCAATCAAGGATGTAGCCCGCCGTTCATAACTCTTATTGCTTCT CTCGGGGTCTCAGTGAGAAATTGGAGCATCGATGTCACAGTAGTGCGGTG CAGTGCTTACGTGCGTGCCAAATGTGTGCACGTGTGTTCGTGCGTGCGTG CGTGCCTGTTTGCGTGTGCACGGTTGGTTATTCCAATTCTGAGGTTCATG GGAGACAAGAAGTAGTGAACTAATTCTGTACGCTACACAAAGCTACCCAG CGCTTGCACTACGGCACAGAGTCTGTCTCGGAGCGGTGACTGTTGTTAAT TTGACAATTGTGTTGCTTTTTTCTTTCCTGACGCGGGTGTGTCCGTGCCT CTGGGGGAGGTGCGAGCTTTCACCGAACGCTCTCGATGCTAGCACGTCAA AACGGTTCCGCCCACTGCCACTCCACTCTGCTGCTGCTCCCTCGTAGTAT CATGTGTCGATTGTGTAGATACCACATGCGCTAGCTTACGCACTGCACGC CCGCCGCAAAATTTCGCCCTGCCGCCCGCCCGCCTTTTCCGGCATCGATG AACTTGAACCGCGGTACACGCTATTTATCTATGTGTGTTGTAGCTTGAGG TTTTTCAATCACAAATGGGACTGGCCGCGAGGCTGTCTCGGCCGGTCTCC GTGCACTGCGTCAAGGCCTACGGAAAGATAGTGGACTACCTCAAGGACGC CGGGGAAAGCAAAACTGTTAAGAATAGAAGCAGAGGTCACGGCGGCAACC CCGGCGGTGGCAAAGTTTGCTCCGGTGGCGGCAATGGCGATAATGTCGCC GGCATTCGTCGGTGCCGTGACGGGGCGGCTAGCAGTGGCGGTGACGGTGG TGTGTTGCTGGAGAGCAAAGCTGAACGGTCAGTCGGGGGCGAGCGGAACT TGGAACGGGATAGCGGCAAAACGAGACGCAAAAACCAGCAGCGACTTCCT CCGCGAATCGCGCTGCAGTGAGCACTTGTTGTTGTTGCTATGCGGCGCTG GCTCGGCGATAAAACCGATTCTGAGCGGTGCGACGTATGTATAGTGCCTC CCGCTTGCCTGCTGATCCGACGAGTACGGGATGGTTTTCCATGCTCACGG GGCCGGCACAAGAAAGGCATTTTACAGACAAAGAGCAACAAAACTTTTAC GACACAGACATTTGGCAGACTGAAGCAGAAAAAGCAGAGCCCGTCGCTCA CGTAAATTGCCGCCCTGCCGCTGCTAGGGTTCGCCGCGGTGTTCCGTTTA TTGTTTTTCCGTGTCTGCCATCACTTGGTGCACCAAAGTCGGCATGTATG CGGCAGGTGGGTAGCCCAACCCCATCCTCCCTCTCCCTTCCTCACGCGGA CCGCTGCCTTTTTTTTTCGTCTAACGGTTTCAGCTCTTTTACGGGGTCAG TGGAAGTCGCCAAGGACATCATCAGGTGCGTGCGCGCTCCGCTCCCGAAC AGCCCTTTGAAATCGAAACCAAGAGTGCTATTCTCTGTTAGATTTTTTGG CTACCGCATAAGTGGTGTCGTACGAGACACTGATGCCCGGGTCTTCGTTT TTTTTTGTCCTTCTCTTATCTCTCTGCCGGTTTCTTTCCCTCCATCGTTG ACTTTCTCTCGTCGACTCTCTCTCTTTTCTCTCTTTCTCTCTCTGTCGTT TCTCCGACCTTGTTTTCTCCCCCCCCAAAAAAACGAGAATGCATGTTGTC TTCGTGCTATGTATCTTATCTCCCTTACTGATGCTGCTGGCTTTTTGGTG TCGTTGTGGTCTCATCTGCAGAATTGGAGAAGGGGGGGGGGAAGGGCGAG GCGGCCAGGTCTACTTCGGATTTTCGGCGGCCGTAAACATGCGGGGTGAC CGTGAGGCCAGACGCTTGATGGGTGAGAGAGATGTCCCCCCCCGCCTGCC CGCTCAGCCGGAAATTGTTGTTGTAAACCATGCATGCGCCTAACGAATCG AGTTTATTTCGATGCGGGTGTGACACACTCAATAAAGAGCAGCGGCCAAA AAAGAACGGGTTTAGCTGGCGCCATTCCGGCCAAACACGGTTTCCTTGCT GTTTTTGATCAGAGGCGGCAGACGGTGCTCCAGGTATGTGTGTCTGTGTG TCGTGTGTTTGTATGTGTGTTTGTTTTGCGAATGTGTTGAAGATTTCTGC GTACTCTTCCTTTTTATACATGCTTTTCCCCTCAACAAGAAACCAACGAT CAAATTAACCCACAGAGCCCCCCCCCCCCCCCCTGTGCACGGTGTTGTCC TCGTCGGATGTGTTTTTTAAAAAATGCACGCAGATGTACTGCGGGTCGTT CCTGACTCTCGGATTCTCATCGAGACCGATCGACAAGCCCCGGAAGCGAC GGGAACGACGGTCGCTGCGGAAGAACTCTTGCGGGTGTGCGGCGCGATCG CGGAAGCCAAAGGGGTTTCCGTCAAGGAGGCGGCGGTGCTCGCCAACAAA AATGCCGTCCGATTTCTGGCGCACGCGCGGAGTCATGAACCGTTGTGTTG AAGATGATGTGTGTGTGTTATCGTAATTTTACGATCTCTGCCCAGCACCC TCTGAAGTCCGAACTGCTGGTTCGACGAAAGAAGGGAAGATGACAACAGC AGTAGGAGGTAATGAAATGAAGTAAATACGACCAGGAGGGGGAGTTTGTT GCTGATGGCAGCTCAAATGCTGGGCTGGGGCGGGACTCTTACTTTTCGGA CTTACTTCGAAGTACGTTCCAACTGTTGATGACGGTCGGCGGTGTTGTGC GGAAAATAAACGGCGCGAGCAGCGAAACGACAGGGCTTTCACTGGAGGAT GCGCTTGCGGACCGTCTTTGTTACGTTTGCTGACCCTCTCTGCATGACAG CTGCCGTTCTCTTTTGCATGTGTTAATAGTCTTCACGTCCTCTTGACGTT CGGGCCGAAAGCAGCTCGAGAGGGTCAAAAATATTATGGGGGCAAAAACC CGATGGCGGATTCGTACAACTCGTGAGCACCAGCCGGTCTTCGGTGGAAA AAATCTCCCGTCTGTCGCAGAAAACGCGAAACAGGAGTAAAAATACATGA GTAAACGGCTGCGCTTGAGTGTAGCCGGGTCAAGTCACAGCAGTAGTAGA AACACGTGTATTTTGCTAACCGACAACGTTGTTTTCAGCATTTGGAGGAG CCACAAAGAGTGATTTCGCGGAGTCGCGCGGAGGCTTTCAGCGACTGACA TGATTGTGGAGGACAACAGCCGGTTGCGTTCGATTGTGCTGTGCACCACG GAAGCTTTTTCTTGTCGCATGATTCTGCGCAAAACACACGGAGATGGAGT TTTTCTATCATCCCCGTCTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:62533..68104+

>mRNA_P-littoralis_Contig170.27.1 ID=mRNA_P-littoralis_Contig170.27.1|Name=mRNA_P-littoralis_Contig170.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig170:62533..68104+ (Pylaiella littoralis U1_48)
ATGAGCATGCGATGGGCACCATATTTGATGGGAACTGTGCTGATAGACAC
ACACTGCCACGTCCACGTTTCGTGCGACCCAATTGCCGCTGGGAGAACAG
CAGACACACCACAGCGTTGCTGTAGTGACGACAGGGAAACATCGACACAT
GATGAGCCTAAGGACCATAACAACATCAACTTCAGCAGCAGCAGCAGCAC
CAGCAGCAATGAACGTAAGACAGGAGGAGTACTGGTACGCAATGACCTGA
CTCGTGTGGGGAACGCCGACGAAGAACGTAGAAAATCAACAACCGTGCCG
CTGCCCGATGTGGTGCGCATCACGATGGGTTTTGCCGAAGAGGATTGGGC
CGCTGCCTTCCGGTACGGGTACGCTGCTCCTTGTGCCACTTCTGAAGCAG
CAGATCATGCCGTGGACAATCTCAGCTGTGCGCGTAGTATACAGACAGCA
CGAACAACACCAGAGAGTTCAGGAATGGAGGACCACCACCAGCCATTTCG
TCTCGAGATGAGCGCTACTGGGGCAGGCAATAGCGGCGGTTCTCCTGCTT
CTCCTGCTCCCTTTTTTCGGTTTGGGCTGGGACTACACCCATGGAGCGCC
CACGCGAGGTCCGAGGGGTGGCTTCGAGACCTCACAACGCTCCTCGAAGA
GCACCCTCGCGCCCTCCTGGGCGAAATCGGGCTAGACAAGGTGGCCCGCA
CTCCTGATACAAGGAGGGTGGAATGGGACGACCAGCTTGAGGTTTTTCAA
TCACAAATGGGACTGGCCGCGAGGCTGTCTCGGCCGGTCTCCGTGCACTG
CGTCAAGGCCTACGGAAAGATAGTGGACTACCTCAAGGACGCCGGGGAAA
GCAAAACTGTTAAGAATAGAAGCAGAGGTCACGGCGGCAACCCCGGCGGT
GGCAAAGTTTGCTCCGGTGGCGGCAATGGCGATAATGTCGCCGGCATTCG
TCGGTGCCGTGACGGGGCGGCTAGCAGTGGCGGTGACGGTGGTGTGTTGC
TGGAGAGCAAAGCTGAACGGTCAGTCGGGGGCGAGCGGAACTTGGAACGG
GATAGCGGCAAAACGAGACGCAAAAACCAGCAGCGACTTCCTCCGCGAAT
CGCGCTGCACTCTTTTACGGGGTCAGTGGAAGTCGCCAAGGACATCATCA
GAATTGGAGAAGGGGGGGGGGAAGGGCGAGGCGGCCAGGTCTACTTCGGA
TTTTCGGCGGCCGTAAACATGCGGGGTGACCGTGAGGCCAGACGCTTGAT
GGATGTACTGCGGGTCGTTCCTGACTCTCGGATTCTCATCGAGACCGATC
GACAAGCCCCGGAAGCGACGGGAACGACGGTCGCTGCGGAAGAACTCTTG
CGGGTGTGCGGCGCGATCGCGGAAGCCAAAGGGGTTTCCGTCAAGGAGGC
GGCGGTGCTCGCCAACAAAAATGCCGTCCGATTTCTGGCGCACGCGCGGA
GTCATGAACCGTTGTGTTGA
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