mRNA_P-littoralis_Contig170.27.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A6H5L0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J1_9PHAE) HSP 1 Score: 271 bits (693), Expect = 1.610e-80 Identity = 179/339 (52.80%), Postives = 208/339 (61.36%), Query Frame = 1
Query: 598 GSPASPAPFFRFGLGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRS-------------------------RGHGGNPG-------------GGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
G + + FF+FGLGLHPW AHARS+ WLRDLT LLE+HP AL +GLDKVARTPDTRRVEWDDQ+E LAAR+SRPVSVHCVKA+GK+VD L+ +G + S R G G GG C GGG GD + I R + G +GG + + +GGER + RLPPRIALHSFTGSVEVAKDI R+G G G +V+FGFSAAVNMRGDRE +RL+DVL+VVPDSRILIETDR+AP A EELLRVC AIAEAKGVS +EAA LA+ NA RFLA
Sbjct: 50 GESTTDSSFFKFGLGLHPWYAHARSKEWLRDLTALLEQHPHAL---VGLDKVARTPDTRRVEWDDQME-------LAARMSRPVSVHCVKAHGKLVDCLRGSGLDGPATHNSXXXXXXXXXXXXXXXXXXXXXADKGRAQSGVEGXXXXXSVLAEGGIGGDFCRGGG-GDGL--IER-KTGCPPAGG------QKEGHNGLGGER------------KRWRLPPRIALHSFTGSVEVAKDITRLGAR--RGYGSEVFFGFSAAVNMRGDRETKRLVDVLKVVPDSRILIETDRRAP----AREAVEELLRVCDAIAEAKGVSAEEAAALASGNAARFLA 350
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: D8LRA6_ECTSI (Cut9 interacting protein Scn1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA6_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.570e-56 Identity = 121/218 (55.50%), Postives = 139/218 (63.76%), Query Frame = 1
Query: 658 AHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLM 1311
AHARSE WLRDLT LLE+HP AL+GEIGLDKVARTPDTRRVEWDDQLEVFQ+QM LAAR+SRPVSVHCVKA+GK+VDYL+ E KT ++ P GG + + +GGE GK + RLPPRIALHSFTGSVEVAKDI R+G G +V+FGFSAAVNMRGDRE +RL+
Sbjct: 26 AHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQAQMELAARMSRPVSVHCVKAHGKLVDYLRGLMERKTGRS--------PAGG---------------------------------QKEEYNGMGGE-------GK-----RWRLPPRIALHSFTGSVEVAKDITRLGAR--RDYGSEVFFGFSAAVNMRGDRETKRLV 188
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A7S1XY07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY07_9STRA) HSP 1 Score: 134 bits (337), Expect = 8.720e-32 Identity = 97/289 (33.56%), Postives = 133/289 (46.02%), Query Frame = 1
Query: 637 LGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLR-VCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
G+HPW AH GW+ L L HP ALLGEIGLDK ARTP+TRR E++ Q EVF +Q+ LAA L RPVSVHCV++ GK+ ++ GAA++G LPP IALHS+ S + + + ++Y GFS A+N R + + +L++ + VVPD R+L+E+D + P + EE LR +C AEAKG S++E A NA RF+A
Sbjct: 43 FGVHPWFAHRAENGWIERLRLRLASHPAALLGEIGLDKAARTPETRRCEYEAQQEVFAAQLALAAELRRPVSVHCVRSVGKLFGMMEA-----------------------------------------GAAAAG-----------------------------------LPPAIALHSYGSSPDWIPRYLALPT--------ELYVGFSYAINGR-ENQREKLLENIAVVPDDRLLLESDLECP------LDIEEHLRAMCAIFAEAKGWSLEETAERTWANAERFVA 240
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: L8GPB7_ACACA (TatDrelated DNase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPB7_ACACA) HSP 1 Score: 120 bits (300), Expect = 7.620e-27 Identity = 89/270 (32.96%), Postives = 125/270 (46.30%), Query Frame = 1
Query: 637 LGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQV----YFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAE 1434
G+HP+ AH +EGWL +L L +PRA++GEIGLDK A TPDT R E+D Q F +Q LA L RP+S HCV+A+G ++ + L + RS GE + R + LPP I +HSF G+V + ++ +GR G + YF FS VNMR A + +DV++ VP+ R+LIE+D+ +P A G E+L RVC +AE
Sbjct: 36 FGVHPYFAHRLAEGWLEELREKLVANPRAIVGEIGLDKAAITPDTARNEYDAQTTAFTAQFDLAVELQRPISFHCVRAFGHVMTLFRQH--------------------------------------------------ALRYDQLMRS--GEEDKARGT----------LPPAIIMHSFAGTVGGMESLLS-----NKGRKGNIQERLYFSFSKIVNMR----APKTIDVIKAVPEDRLLIESDQHSP-AHGE----EDLSRVCEIVAE 229
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: W7TX83_9STRA (Uba thif-type nad fad binding fold domain deoxiribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX83_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.710e-26 Identity = 88/291 (30.24%), Postives = 124/291 (42.61%), Query Frame = 1
Query: 634 GLGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLAHA 1506
GLG+HPW + GW L LE P ++GEIGLDK ++ + W++Q ++F+ QM LAA L RPVSVHCV+AYG + ++LK S AE LPP +A HS+TGS+++A +R+ E G V+FGFSAAV +R +L VL ++P +L+E+D EA + +C +AE KG+ A + KNA RFL A
Sbjct: 99 GLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAG---ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKG------------------------------------------------------RSAAE-----------------------LPPSVAFHSYTGSLDMAGAFLRL-----EHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGA-----MNTICDVVAEVKGMERNVLAEVTTKNAERFLRRA 299
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A7S1AAK2_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AAK2_NOCSC) HSP 1 Score: 114 bits (284), Expect = 4.700e-26 Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 634 GLGLHPWSAHARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTV 921
G G+HPW AHA +EGWL L LLE HP AL+GE+GLDK+ RT +TR+ E+ Q VFQ+Q+ LAA L RPVSVHCV+++GK+ + L+ ++ ++
Sbjct: 17 GFGVHPWYAHAVTEGWLERLRALLEHHPHALVGEVGLDKIFRTKETRKCEYQAQQVVFQAQLKLAADLCRPVSVHCVQSWGKMAEILEQRAKAGSL 112
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A1Y2CLQ2_9FUNG (Metallo-dependent hydrolase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CLQ2_9FUNG) HSP 1 Score: 108 bits (271), Expect = 9.850e-23 Identity = 97/296 (32.77%), Postives = 137/296 (46.28%), Query Frame = 1
Query: 637 LGLHPWSAHARSE--GWLRDLTTLLEEHPRALLGEIGLDKVARTPDTR-RVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIV----DYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETD-RQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
GLHPW H ++ L +L L +HP AL+GEIGLD VA P+T + E+D QL F Q LAA L RPVSVH V YGK+ D L+D + + K R R +++ D +E D T + ++ PP I LHS++GS E ++I+R + YF FS VN R + R+ + + VPD RILIE+D A G + A +L +A+AKG S+++AA+ NA+RFL+
Sbjct: 28 FGLHPWFLHQLTDPDAALAELRNYLLKHPSALVGEIGLDGVATHPNTTTKYEFDQQLNYFTKQWNLAAELRRPVSVHAVGCYGKLEAFFQDSLRDVPKDLSRKQRDR-----------------------LKKDFD-------------------------YVEEDP--TLHPSLKKWPPAIMLHSYSGSTESIRNILRYPSTIST----RFYFSFSHFVNSRTPFD--RMKEKICAVPDDRILIESDLNDARVVDGACMLALDL------VAKAKGWSLEDAAIRTGANALRFLS 261
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A507DYG5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DYG5_9FUNG) HSP 1 Score: 107 bits (268), Expect = 8.890e-22 Identity = 92/294 (31.29%), Postives = 131/294 (44.56%), Query Frame = 1
Query: 637 LGLHPWSAHA----RSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTRRV-EWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKD-AGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSG-GDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFL 1497
G+HPW AH S L +L HP AL+GEIG+D VA+ T + +D QL VF++Q+ LA R+ RPVSVH V+A+G +VD +++ AG+ + +N + R D + G D G + +PP I HS++GS E + ++ + G G + YF FS VN R + D +R VPD RILIE+D + V C +AEAKG ++KE A +NA RFL
Sbjct: 73 FGVHPWFAHTVPTPPSASAFTSLERILASHPGALVGEIGIDSVAKDRTTGELYPFDQQLAVFRAQLALAGRMGRPVSVHTVRAHGCLVDVMREMAGKRQKKRNWKK------------------------ERELDRFYTQGDSDXXXXXXXXXXXXXXXXXXXXVSRGAS-------IPPAIMHHSYSGSTETIRALVSLPNG----MGARFYFSFSTGVNGRSPKTT----DHIRAVPDDRILIESDLHDAQQIDAAVN-----DACRMVAEAKGWTMKETAERTRRNAERFL 322
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A1Y1YH75_9FUNG (Metallo-dependent hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YH75_9FUNG) HSP 1 Score: 105 bits (262), Expect = 9.150e-22 Identity = 83/292 (28.42%), Postives = 122/292 (41.78%), Query Frame = 1
Query: 634 GLGLHPWSAHARSEG--WLRDLTTLLEEHPRALLGEIGLDKVARTPDT-RRVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFLA 1500
G G+HPW A E W L LE+H A+LGEIGLDK+A P T R QLE+FQ Q LAA L+R VSVHCV+++G ++D + + PP+I LHS++GS E+AK +++ + G + YF FS VN + ++L+D L+V+P +R+L+E+D A E+ EE+ + G I +G V E + KN+ F +
Sbjct: 38 GFGVHPWYAEGMKESDLWEEKLKQYLEKHENAVLGEIGLDKIATDPKTGERYHLPTQLEIFQRQFALAASLNRVVSVHCVQSHGHLLDCFRQL-----------------------------------------------------------------------------KPEEFPPKIMLHSYSGSHEIAKAFLKLPKK----VGARFYFSFSKLVNSK----TKKLVDSLQVIPRNRVLLESD--AHESLKVDGVMEEICNIIGDIWGCEGAEVAE---ITYKNSKEFFS 239
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Match: A0A0L0H628_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H628_SPIPD) HSP 1 Score: 106 bits (265), Expect = 1.550e-21 Identity = 86/296 (29.05%), Postives = 138/296 (46.62%), Query Frame = 1
Query: 637 LGLHPWSAH--------ARSEGWLRDLTTLLEEHPRALLGEIGLDKVARTPDTR-RVEWDDQLEVFQSQMGLAARLSRPVSVHCVKAYGKIVDYLKDAGESKTVKNRSRGHGGNPGGGKVCSGGGNGDNVAGIRRCRDGAASSGGDGGVLLESKAERSVGGERNLERDSGKTRRKNQQRLPPRIALHSFTGSVEVAKDIIRIGEGGGEGRGGQVYFGFSAAVNMRGDREARRLMDVLRVVPDSRILIETDRQAPEATGTTVAAEELLRVCGAIAEAKGVSVKEAAVLANKNAVRFL 1497
G+HPW AH + W R+L L HP AL+GEIG+D AR +T + Q+ +FQ+Q+ LAA L RPVS+H V+ +GK+++ +++ + T++ +S E+ + S GG +G+ R + LPP++ HSF+GS ++ + ++R+ +G G + YF FS +N R + R+ R VPD RILIE+D A + +L C +A+AKG ++++ A NA FL
Sbjct: 78 FGIHPWFAHHTDGPPKLEETAAW-RNLREQLTSHPHALVGEIGIDGAARDRNTNIKYPMPHQVAIFQAQLALAAELRRPVSIHTVQCHGKLLEIMREL--ALTMRPKSS------------------------------------------EALSNESSGG-------TGRYRVPDP--LPPKMMHHSFSGSPDIVRALLRLPKGVGR----RFYFSFSVGINGRSLKTVERI----RAVPDDRILIESDLHDAAAIDSG-----MLGACKLVADAKGWTLEQTAQKTGTNAKEFL 306 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig170.27.1 >prot_P-littoralis_Contig170.27.1 ID=prot_P-littoralis_Contig170.27.1|Name=mRNA_P-littoralis_Contig170.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=490bp MSMRWAPYLMGTVLIDTHCHVHVSCDPIAAGRTADTPQRCCSDDRETSTHback to top mRNA from alignment at P-littoralis_Contig170:62533..68104+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig170.27.1 ID=mRNA_P-littoralis_Contig170.27.1|Name=mRNA_P-littoralis_Contig170.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5572bp|location=Sequence derived from alignment at P-littoralis_Contig170:62533..68104+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig170:62533..68104+ >mRNA_P-littoralis_Contig170.27.1 ID=mRNA_P-littoralis_Contig170.27.1|Name=mRNA_P-littoralis_Contig170.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig170:62533..68104+ (Pylaiella littoralis U1_48)back to top |