mRNA_P-littoralis_Contig170.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.94.1
Unique NamemRNA_P-littoralis_Contig170.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:375037..375901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size865
Hectar predicted targeting categoryother localisation
Exons1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.326787-UTR-P-littoralis_Contig170:375036..3750571680789823.326787-UTR-P-littoralis_Contig170:375036..375057Pylaiella littoralis U1_48UTRP-littoralis_Contig170 375037..375057 +
1680789823.3510826-UTR-P-littoralis_Contig170:375669..3759011680789823.3510826-UTR-P-littoralis_Contig170:375669..375901Pylaiella littoralis U1_48UTRP-littoralis_Contig170 375670..375901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.336916-CDS-P-littoralis_Contig170:375057..3756691680789823.336916-CDS-P-littoralis_Contig170:375057..375669Pylaiella littoralis U1_48CDSP-littoralis_Contig170 375058..375669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.94.1prot_P-littoralis_Contig170.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 375058..375669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.94.1

>prot_P-littoralis_Contig170.94.1 ID=prot_P-littoralis_Contig170.94.1|Name=mRNA_P-littoralis_Contig170.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MQAFFMENLNKPKISARASSPTQWQAAREVISVLQDASLVSTQVQGGRHG
FVGMAINSSSYVLLKSLSDSTQDIVSLDPFDGDPEEVVVTDLLPKVQKLL
EILVDDMGSRGLASAEKPTEKIYMPDARSAFQVLLPRCLLQRGAQPAAGC
SQRGAGEVGGILRHCICERGCRRNGECFGGLFAGFSRGGTGGGTGCEPLC
GRR*
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mRNA from alignment at P-littoralis_Contig170:375037..375901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.94.1 ID=mRNA_P-littoralis_Contig170.94.1|Name=mRNA_P-littoralis_Contig170.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=865bp|location=Sequence derived from alignment at P-littoralis_Contig170:375037..375901+ (Pylaiella littoralis U1_48)
GAGGTGCGCCTCTACAAGCCCATGCAGGCGTTCTTCATGGAGAACCTAAA
CAAGCCGAAGATCAGCGCGCGCGCGTCTAGCCCGACTCAGTGGCAGGCTG
CCCGTGAGGTTATCAGCGTCCTTCAAGACGCCTCACTGGTGAGCACGCAG
GTCCAGGGTGGACGACATGGCTTTGTGGGCATGGCGATCAACTCATCATC
GTACGTTCTGCTGAAGTCGTTGTCGGACTCGACACAGGACATCGTAAGCC
TTGACCCTTTCGATGGCGACCCCGAGGAGGTCGTCGTGACCGACCTTCTC
CCGAAGGTTCAGAAACTGCTGGAAATCCTGGTGGACGACATGGGATCCAG
GGGCTTGGCTAGTGCTGAGAAGCCGACGGAGAAGATATATATGCCTGATG
CTCGATCCGCGTTTCAAGTCCTGCTGCCTCGCTGTTTGTTACAACGGGGG
GCACAGCCTGCAGCAGGCTGCAGCCAGCGCGGTGCGGGAGAAGTTGGGGG
GATTCTCCGGCACTGTATCTGCGAGCGCGGGTGTCGGAGAAACGGGGAAT
GCTTCGGGGGACTCTTCGCAGGCTTCTCCCGGGGCGGCACCGGAGGCGGC
ACCGGGTGTGAGCCCCTCTGCGGGAGGCGGTGACCCTCCCGAGCCGGCGA
AGATGTCCAGAATGGAAAGGATCAGAGCGAGTCTAGGCACCCAGGTCTCC
GGCCCCGCGGGCGACGTGGATGCGGCAGAGGATCGAGCGGACGTCGCAGA
GCGCGAGTTTGCCGCCTACATGAAAGAAGCGGCCGCCACCAACGACGCCA
AATTCGACCTACTGAAGTAGTACTGGAATGAGCGGGGCGTGGATGGGGTA
GACCAGGCAGGGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:375037..375901+

>mRNA_P-littoralis_Contig170.94.1 ID=mRNA_P-littoralis_Contig170.94.1|Name=mRNA_P-littoralis_Contig170.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig170:375037..375901+ (Pylaiella littoralis U1_48)
ATGCAGGCGTTCTTCATGGAGAACCTAAACAAGCCGAAGATCAGCGCGCG
CGCGTCTAGCCCGACTCAGTGGCAGGCTGCCCGTGAGGTTATCAGCGTCC
TTCAAGACGCCTCACTGGTGAGCACGCAGGTCCAGGGTGGACGACATGGC
TTTGTGGGCATGGCGATCAACTCATCATCGTACGTTCTGCTGAAGTCGTT
GTCGGACTCGACACAGGACATCGTAAGCCTTGACCCTTTCGATGGCGACC
CCGAGGAGGTCGTCGTGACCGACCTTCTCCCGAAGGTTCAGAAACTGCTG
GAAATCCTGGTGGACGACATGGGATCCAGGGGCTTGGCTAGTGCTGAGAA
GCCGACGGAGAAGATATATATGCCTGATGCTCGATCCGCGTTTCAAGTCC
TGCTGCCTCGCTGTTTGTTACAACGGGGGGCACAGCCTGCAGCAGGCTGC
AGCCAGCGCGGTGCGGGAGAAGTTGGGGGGATTCTCCGGCACTGTATCTG
CGAGCGCGGGTGTCGGAGAAACGGGGAATGCTTCGGGGGACTCTTCGCAG
GCTTCTCCCGGGGCGGCACCGGAGGCGGCACCGGGTGTGAGCCCCTCTGC
GGGAGGCGGTGA
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