mRNA_P-littoralis_Contig170.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.85.1
Unique NamemRNA_P-littoralis_Contig170.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:351334..353485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.1623557-CDS-P-littoralis_Contig170:351333..3514321680789823.1623557-CDS-P-littoralis_Contig170:351333..351432Pylaiella littoralis U1_48CDSP-littoralis_Contig170 351334..351432 -
1680789823.1736598-CDS-P-littoralis_Contig170:353404..3534851680789823.1736598-CDS-P-littoralis_Contig170:353404..353485Pylaiella littoralis U1_48CDSP-littoralis_Contig170 353405..353485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.85.1prot_P-littoralis_Contig170.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 351334..353485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.85.1

>prot_P-littoralis_Contig170.85.1 ID=prot_P-littoralis_Contig170.85.1|Name=mRNA_P-littoralis_Contig170.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
AEAKPLGSPEHCTSGASSPRFSDGRFATWRRKMCETPPKPERLRLKTCRL
FRRDGCSPR*
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mRNA from alignment at P-littoralis_Contig170:351334..353485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.85.1 ID=mRNA_P-littoralis_Contig170.85.1|Name=mRNA_P-littoralis_Contig170.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2152bp|location=Sequence derived from alignment at P-littoralis_Contig170:351334..353485- (Pylaiella littoralis U1_48)
GCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTC
GAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTGAGTGCAAAAATCGTAT
TTTCTAGGGTCTCACAGGCGGCCCCTTCTGACCCCGGCTTCCGACTACCC
TCTCTAGCACGACAGCGTGCTCCTTCCACAGCGGTGGCAAGTGTAGGCTC
GCCCATCCCAGCCGTTCGCCATACTCATGATCTACTCTCGGGAGCAATCC
GCGTGGGAAACGATCGTGTGTGGGCGAAGATATCAACACATACATGGGCA
CATGTCATATTCGGTTAGGGTTACGCCGCACCAACAGGCGCACGCGGTGC
TGTTTTTTGTTTTTGCTTGTATTTTTTTTCGAAAGTATGGGCGACCTGGA
GGAAGGCCCTGATGGGTATAATGCTACTATTAATGTACTATGGAGTATGA
CTACAAATTCGCTATAAATTCGCTACACGTATACGATATATAGTCATACT
CCATAGGTGCCAATGTGTCCCCTCTTGTGCCATCTTGTGCGTAAGAGGGG
GTAGTTGTGAGTGTAGGACCCCGTCGTGCATGCTGGGATTTTTCACTTTA
GGGCGGGCCTTGGACATTTTCTCGTGTATAGCACTGCTGCACTAGTCTAG
TCTTGCTGCGGCAGTTCGGCATCAGAAATTGCCCGTCCGTAGGTAGTCGT
GCCCTCAAAGTTTGCCAATTTTTTTCGTGGGTCCAAATCTCGCAGCAGTA
CAGGACGTAAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTTTCATTTTTT
GATAGAATCCGAACGAACTTTTTCCGGCCAACGGTTGCCGATCCGCTGTT
CTTATAGGTAAATAGGAGTTCGGATTTTCGGTGATCCCTTTTTTTGAGTA
TGTGGTTGAAGAGTCGGCTCCAGAGTGTATCTGCATCGAAGGACCGCAGG
ATGGTGTTTTTTGCGCTGAAACCCGTTTGCATCGCCGCTCGTAACTTTCG
AACGAATGAAGACACAGCAATGACGAAGGCATCTTCCGTGAGCTGTGTAT
ATGATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGGTTACATCCGTACAT
TCGCAACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAA
GATGTATCAGCCGGACTGCTGTACAGCAGCATTATTATATACTGCTGTAT
GTATAGTAGTTGTACAGCAGTAGAGAAAGGAGATGACAGCTCGTGTTCTT
TTTTACAACACAACAACATGCCACAGCCACGAGCGATGACCATTTTGCGA
ACATGCCAGTGTAATCCTCACCCAAACGATTACCACACGAGGGGAGCCAT
ACGCACAGCTCACGAGAGATGGGCTTGTCATCGCTGTGGCTTCATTCATT
GGGGAGTTACGAGCGAAGATGCAACTTGTGGTCTCCCTCAGAGGAAGCTT
TGATACTCCTCCTCCTGCTGCTGCTGCTGTGCTGATGATGCTGCTGCTAC
ATACGGTTGGTTTTGGTTGCTGATGAACACGATGGAATGAACGATGACAC
GGCAAACGCACGCAGAAAGATGGTGGACACATGTTATGTATGGACAGCAG
CAAGCAGTAGTAGCAGCAGCAGCAGGAGCAGCAGCTGCAACAACACAGAA
AGTAGTAGCAGAGCTCTCCTCCTCTGATGCTCTGTTGTGATTAATATCGT
TTGTTTTGTCCACACACAAAGAGAGAGATAACTTCACACATTTTTTGTAA
TATATTTTCCGATCGTATTTTCCGAACCGATCCAGCGTTCGGAAAATGTC
CGATTTTCCGAACGTAATCCGATTAAAAGCTGTTCGGAAAATTTTGTTCG
GAAAATGTTGTTCGGAAAAAGGTGTTTTCCGAGCCTTAAGAAGCCTTGAC
TCTAAAAAAATTCGGAATCTATCAAAAAATGAATAAAATATCCGGCCCTG
CAAGAAACCGCCTAAGCCCTGAAAAGACTGGCGTGGTATTGCTTCATCAC
GAAGGTATACTCATTCATGCCTAAATATGTACGTCGAACGTTAGATTGTT
CAGACATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGGCT
GCGGTTGAAGACATGTCGCCTGTTCCGGCGAGACGGATGTTCGCCGAGGT
AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:351334..353485-

>mRNA_P-littoralis_Contig170.85.1 ID=mRNA_P-littoralis_Contig170.85.1|Name=mRNA_P-littoralis_Contig170.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig170:351334..353485- (Pylaiella littoralis U1_48)
GCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTC
GAGTCCAAGGTTCAGCGACGGAAGGTTCGCGACATGGAGACGGAAGATGT
GCGAGACGCCGCCGAAGCCGGAGCGGCTGCGGTTGAAGACATGTCGCCTG
TTCCGGCGAGACGGATGTTCGCCGAGGTAA
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