mRNA_P-littoralis_Contig170.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.79.1
Unique NamemRNA_P-littoralis_Contig170.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:347339..348492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size214
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.124228-CDS-P-littoralis_Contig170:347338..3475081680789823.124228-CDS-P-littoralis_Contig170:347338..347508Pylaiella littoralis U1_48CDSP-littoralis_Contig170 347339..347508 +
1680789823.1364884-CDS-P-littoralis_Contig170:348448..3484911680789823.1364884-CDS-P-littoralis_Contig170:348448..348491Pylaiella littoralis U1_48CDSP-littoralis_Contig170 348449..348491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.79.1prot_P-littoralis_Contig170.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 347339..348491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.79.1

>prot_P-littoralis_Contig170.79.1 ID=prot_P-littoralis_Contig170.79.1|Name=mRNA_P-littoralis_Contig170.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
EGFSPRAGIRNSGTFHTHASALTPRHAVHARRRNLLGHLSIAPVEPRVQG
SATEGSRWGRTATGMAVGRFG
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mRNA from alignment at P-littoralis_Contig170:347339..348492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.79.1 ID=mRNA_P-littoralis_Contig170.79.1|Name=mRNA_P-littoralis_Contig170.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1154bp|location=Sequence derived from alignment at P-littoralis_Contig170:347339..348492+ (Pylaiella littoralis U1_48)
GAAGGCTTTTCGCCTCGGGCGGGGATCAGGAATTCTGGCACCTTCCACAC
ACACGCGTCGGCCCTCACACCTCGGCACGCGGTCCACGCGCGGAGGCGAA
ACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGT
TCAGCGACGGAAGGTTCGCGGTGAGTGCAAAAATCGTATTTCCAAGGGTC
TCACAGGCGACCCCTTCTGACCCCGGTTTCCGACTACCCTCTCTAGCACG
ACAGCGTGCTCCTTCCACAGCGGTGGCAAGTGTAGGCTCGCCCATCCCAG
CCGTTCGCCATACTCATGATCTACTCTCGGGAGCAATCCGCGTGGGAAAC
GATCGTGTGTGGGCGAAGATATCAACAAAATGCAGATCGCGAAATAACAT
GCGACGAGCTCGGCGGACCCATAGGCCCTGGTTTTTCGCATTTTTTGCAA
ATTTTTTAAAATGAGGAACGTCTGCTGTTTGTTGTCACAAAAAAAACATT
CATCAAAACATTGTCACGCCCCCATAATGCACCTTCTTTCGCGGTGATTA
TTGCAGAGACCGTACAAATTACTTGATCGTCCCGTCACCGTAGTTGCGCC
CGAGATTTAGGCGCGCAGAATCGTGTATCAGTTTCTCTAGAGAATTACAG
TAATAGTTCTTAGAGGAGGGCTATAAATAGATAAATAGAACAGACAGACG
GGGATAGCGGAGCGAACCTGTCTGTATCCAGGTCTGTAAAGCGAGAGTCC
GCGTTTGGTGTGCCAAGCTGTTTCGAGGCAGAAGTGGCGAGCCAGGGGTG
ATGTGCGAAAGTCTGTGGGTATAGTGTGGCCCGACTTTTTGTTTTTCGTT
TTCTGCAGGTCATAAATCGCTCGCAATAAAACATGTGCACGAGGGCCCTT
CAAACCCACTCCACAGCAGTGGGTTGGAATATATGTAGAAAGAAGTCACA
GCAGCAGCCGCTGCTCTGTGTAGTGATCGTTCAATGGAAGTTATGATATG
TGGCCACCGAAGTTGACGTTCGGGTGCGATGGAAAATCAGGGACGATTTT
CGTACTCGTTCGGCGCTAAATTCGTCCCCCCGCCCCCCTTCGCGTGCTTT
CTCTCGACAGGTGGGGGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTT
GGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:347339..348492+

>mRNA_P-littoralis_Contig170.79.1 ID=mRNA_P-littoralis_Contig170.79.1|Name=mRNA_P-littoralis_Contig170.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig170:347339..348492+ (Pylaiella littoralis U1_48)
GAAGGCTTTTCGCCTCGGGCGGGGATCAGGAATTCTGGCACCTTCCACAC
ACACGCGTCGGCCCTCACACCTCGGCACGCGGTCCACGCGCGGAGGCGAA
ACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGT
TCAGCGACGGAAGGTTCGCGGTGGGGGAGGACGGCCACCGGCATGGCGGT
CGGGCGCTTTGGA
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