mRNA_P-littoralis_Contig17.204.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.204.1
Unique NamemRNA_P-littoralis_Contig17.204.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: D8LE47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE47_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 4.970e-75
Identity = 119/141 (84.40%), Postives = 128/141 (90.78%), Query Frame = 1 
Query:  175 MNRLVRFGVEALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKVGEQEMRLKDLNRVKAVAKPKPEDGTLALLRWLNASGAPKKR 597
            MNRLVRFG EALKPQ++AG +KW++P VSRRKA V+RKKA+RDGSFGSVVMD DTGKAIGGWDPAWDI+E PAPRPLRP KLHKNQRDRA RAEKITAK+GEQE RLKDLNRVKAV KPKPEDGTLALLRWL  SGA KKR
Sbjct:    1 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVMDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGTLALLRWLKTSGAAKKR 141
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: A0A6H5JCG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG4_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 6.590e-74
Identity = 118/145 (81.38%), Postives = 130/145 (89.66%), Query Frame = 1 
Query:  163 LRVVMNRLVRFGVEALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKVGEQEMRLKDLNRVKAVAKPKPEDGTLALLRWLNASGAPKKR 597
            LR  MNRLVRFG EALKPQ++AG +KW++P VSRRKA V+RKKA+RDGSFGS+V+DEDTGKAIGGWDPAWDI+E PAPRPLRP KLHKNQRDRA RA+KITAK+GEQE RLKDLNRVKAV KPKPEDG LALLRWL  SGA KKR
Sbjct:   64 LRFAMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSIVIDEDTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKNSGAAKKR 208
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: A0A7S4KCW7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCW7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.360e-12
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:  166 RVVMNRLVRFGVEALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKVGEQEMRLKDLNRVKAVAKPKPEDGTLALLRWLNASGAPKK 594
            +  +  L+R G +AL+PQ +    KWR PL+S RKA V+RK A++DG++GS   D + GK   GW+P WD   +     LR  K  K +R R  RA KI + + + + R++     K   KP+P  G L L++ +N     KK
Sbjct:   13 KAAIRMLIRHGEQALRPQFVNE--KWRRPLISMRKAAVIRKGAIKDGTYGS--FDPENGK---GWNPMWDTPRKITS--LRLPKETKRERTREARASKIESLLEQADDRIETYRLEKEALKPEP--GVLNLIKKMNKGTRRKK 144
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: A0A7S0AE13_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AE13_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-9
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  184 LVRFGVEALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKVGEQEMRLKDLNRVKAVAKPKP 537
            L R G EA KPQ +     WR P VS R+A V+RK AVRDG++G+   D  TG+   GWDP WD   + +   +RP K  K +R R  RA++I   + + + +++   + +   KP+P
Sbjct:   36 LKRHGEEAFKPQFVKE--SWRKPAVSGREAAVLRKAAVRDGTYGA--FDPQTGR---GWDPLWDKPGKVSS--IRPPKETKRERTRESRAQRIEQLLEQADEKIESYRKAQLEKKPEP 144
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: A0A7R9ZNN0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZNN0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.930e-8
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  163 LRVVMNRLVRFGVEALKPQKIAG-------VYK----WRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRP------LRPQKLHKNQRDRAVRAEKI 462
            +R  +  L + G EALKPQK+          YK    WR P+VS+R  KV+RK+A+RDG++G+   D  TG    GWDP WD    P          ++P+K    +R R  RA+KI
Sbjct:    1 MRAALRHLCQKGAEALKPQKVLSKAAENGFTYKETHVWRRPVVSKRVGKVLRKQALRDGTYGT--FDVTTGV---GWDPLWDPVLMPNQFKVSRYGRMQPKKKTSRERTREERAQKI 112
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: A0A7S3H3W9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3W9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.690e-7
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  175 MNRLVRFGVEALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKVGEQEMRLKDLNRVKAVAKPKPE 540
            +  L   G +AL P  + G Y   +PLVS+R A  +RK+A+ +G+FG  V +E      GGWDP WDI +      LRP K H  +R R  RA KIT  +     R+    +  A  +PK +
Sbjct:   20 IRMLTLHGGDALLPAMVKGRYI--APLVSKRVAADIRKRALIEGTFGEFVPNE------GGWDPKWDIPK--TMHILRPHKGHLRERTREKRANKITTAMAGMPERIAKYEQEVADRRPKKD 131
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BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Match: A0A024GL61_9STRA (Mitoc_mL59 domain-containing protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GL61_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-5
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:  169 VVMNRLVRFGVE----ALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVVMDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKVGEQEMRLKDLNRVKAVAKPKPEDGTLALLRWLN 573
            + + R++R   E    AL+P  + G  KWR PL+S R+A +++K+A  +   G  ++        GGW P WD   +     +RP K HKNQR+   R  KI A + +   +L++    KA+   KP  G   L  WL+
Sbjct:    1 MTLRRMLRLSAEEAGAALRPTFVDG--KWRQPLLSSRRAVMLKKRAQAENLVGKWIVGH------GGWLPEWDKPNKH--HVMRPPKGHKNQRNVHERVAKIQAALDKMPQKLEEHR--KAIKSAKPLQG---LELWLS 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LE47_ECTSI4.970e-7584.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCG4_9PHAE6.590e-7481.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4KCW7_9STRA1.360e-1237.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0AE13_9STRA3.400e-938.14Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7R9ZNN0_9STRA3.930e-838.46Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3H3W9_9STRA6.690e-736.89Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024GL61_9STRA3.680e-532.37Mitoc_mL59 domain-containing protein n=3 Tax=Albug... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:863256..867161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE47
Model size1264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.32e-79
EggNOG OGs2EAW9@1|root,2SH2Q@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004100.1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789822.1903949-UTR-P-littoralis_Contig17:863255..8639191680789822.1903949-UTR-P-littoralis_Contig17:863255..863919Pylaiella littoralis U1_48UTRP-littoralis_Contig17 863256..863919 -
1680789822.2325501-UTR-P-littoralis_Contig17:866987..8671611680789822.2325501-UTR-P-littoralis_Contig17:866987..867161Pylaiella littoralis U1_48UTRP-littoralis_Contig17 866988..867161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789822.2032027-CDS-P-littoralis_Contig17:863919..8640601680789822.2032027-CDS-P-littoralis_Contig17:863919..864060Pylaiella littoralis U1_48CDSP-littoralis_Contig17 863920..864060 -
1680789822.2149818-CDS-P-littoralis_Contig17:865171..8652961680789822.2149818-CDS-P-littoralis_Contig17:865171..865296Pylaiella littoralis U1_48CDSP-littoralis_Contig17 865172..865296 -
1680789822.2241445-CDS-P-littoralis_Contig17:866827..8669871680789822.2241445-CDS-P-littoralis_Contig17:866827..866987Pylaiella littoralis U1_48CDSP-littoralis_Contig17 866828..866987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.204.1prot_P-littoralis_Contig17.204.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 863920..866987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.204.1

>prot_P-littoralis_Contig17.204.1 ID=prot_P-littoralis_Contig17.204.1|Name=mRNA_P-littoralis_Contig17.204.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
MNRLVRFGVEALKPQKIAGVYKWRSPLVSRRKAKVMRKKAVRDGSFGSVV
MDEDTGKAIGGWDPAWDIYEEPAPRPLRPQKLHKNQRDRAVRAEKITAKV
GEQEMRLKDLNRVKAVAKPKPEDGTLALLRWLNASGAPKKR*
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mRNA from alignment at P-littoralis_Contig17:863256..867161-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.204.1 ID=mRNA_P-littoralis_Contig17.204.1|Name=mRNA_P-littoralis_Contig17.204.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3906bp|location=Sequence derived from alignment at P-littoralis_Contig17:863256..867161- (Pylaiella littoralis U1_48)
GCGAGATTTGATGCGCCCCTCCCAATACCTCCGCTTCCCCTCATATGCGG
TGCTCCCCGCTCTGTAACCTGTAGTCTGTCCCATGTGTGTGCTGTGTGCA
CAGCTGTGCTGTGTAGTCCGCTGTGTTGTTGAACCCAAAGTAAGCAAGGA
CAAAGGGGACTGCTGCGTGTCGTCATGAATCGGCTGGTGAGGTTTGGGGT
CGAGGCCCTGAAGCCGCAAAAGATTGCCGGGGTGTACAAGTGGCGATCGC
CGTTGGTGTCAAGGCGAAAGGCAAAGGTAATGCGCAAGAAGGCTGTCAGG
GACGGCTCCTTCGGCTCCGTCGTGATGGATGAAGGTGAGAGGAAGGCACT
CACGATCAACAGCGGGACAGCGAAAAAGAGAATGTGAGAGTGAAAGTAAG
AGAGAGTCGCAGGTGGGTGGTTGTCTAGAAGCGATAGAAGGAAAGCAATG
GTGAACAAATTCGTACGAGAGTCCGAAATACCAATTCCCGCTCTAGCTTC
GAAATATATCATGGTTCGCACCCATCTTATGATACCTACCTGTGTGCTGG
TCCATCTTTCTGTATCTTACAGCAGTATGATATCATACAAACATTCTTCT
CTTCGATGATGAGAGCATCGTGTTGGAACCCTCTGGCTCGGGCGAAGACC
CGTGCGCCCCGCTAGTGTTGTCGGGCGATGAGGTTTGGTACAGATAATTG
CACATCAGCGACTAGGGGATACGGACAACTTTTGTGTGTGCGGTCCAACC
TCTCTATGGATGAGGATGTGCGCAACTCCCTTCGATGTCACTCCTCTCGG
CTCATGACGGTAGAAGCAGCAAACAGAGCAGCAGTATGGCAGTCACACAC
GATGTGTCCACCTTGGTCACCTGCGCCAGCCTGCGCAACAACCCCTCTCA
TGTATCAACATAGATTTTCTTAGGAAGGCTCACAACCTCATCGGTGTCTT
GTTACCACCGTTGAGAATATAACTACTTGTAGCTGCTGCATCACTTCACC
TTGTACAAGTACGATATCATCTGTATCATGTGAGTATTTTACGACACCAG
GTCTAAGAATCTTCTCGTGCGTGGCGACCACTTCTCACAAACCGCTGTGG
CCGAGGCCGGCCCGCCGCAAGAGCTTGAGAGCTAGCATATAAGGTCATCA
TGCCCATGTGTTATATGCGCATTATGCCCGTGGATCGTGTACGTATATCA
TACCCATGTCTGGCTTTATTTGGCTCAAGCCGCGTACCGTAAATCGCGGA
TGACTGCAGGCTGAGAGTGTGACCTGAGGCTGCTGTGCAGACAAGCACTA
GATTTTTTCTGGCACGTACGAAACCGCCGCTCGCTCGTTTGCACAGAGAG
GAGGGAACACGAGGAAAACCACTCCGTCTAGTACTGGTATCATAACGTTT
TTTCCTCTGAAGACCGCTGAGACCAACGTCGTAGAACCATAGAAAGCACG
ACCTGGACCTGCTTGTTGTGTGTAAAGCACAGCAGCTGCTGTGCCTGGGA
TCGGTACTAGTACACGCGTCGAAGTTGTTCCCCAAACGCACCCACTACCG
GTACCCACCCTGCTGTCAGGCACACGTTATGATATCATTCTTCCAGAGAA
TGTACGTGTAGCAGCATGATATTTCCAACTATCATTGCGTGAACCATGCC
CATTTACTTTTATTTTGTTGTCCTCCCTTTCGATATGACCCACCCCATTT
TTGGCGGCGTGCATGCGACGAGTAGTACGCAGATACCGATCTGATAATTT
CATAATTTCTGATAATTTACAACTTTGCCTTTTCCTGTGATATTCTTGTC
AAACCCAATTCGAAACACCGATCGAAATCTTATCCCTCCATCTTTTCTGC
ATGTGCCGCACGCAGACACCGGAAAGGCGATAGGGGGGTGGGATCCGGCT
TGGGACATCTATGAAGAGCCCGCCCCGCGACCTCTTAGGCCGCAGAAGCT
ACACAAAAACCAGCGGGATAGAGCAGTGCGCGCTGAGAAGGTGAACCCGC
TTGAAAGCACCTTCTTATCACACTGACGTACGTACGCTTCCGTGTGCACA
GCTGCAGTGACACTAAGAACCCTTCCGAAGAAGCAAGGACATTCATTGAT
TCGTTCGTTGTGCCCGAAGAAGGACCCCTCCCAAAAATACCTGCTTATAT
GATGGGTTTGTGCAGGAAACGCTGGATGTCGTTCTGAGTATGACAGAGAA
GCTTGGAAAAATGAGCTGTCATTTTATCCATAATGGATAGATTCGATCGT
TTTGCTTCAGCAGACCATTGAACGAGAATGTTATCATATATTATGGCCGA
TTTACGGCAGCATTGTGGCAGGTATATAACGACGCATCATTTTTTTTGGG
GTGGGATTTTTCCCGGGGAAACGGCGGCGTGAGCCGGCGGGATCACGATG
CCGCTTTGATATTTGAACGGCAGTTGTCGGTCGTTGTATAATCGCACCGC
CTCCTTTGCTTTCGACACTGTTCGAACGAAGCCTGTTTTGCTGCTAATGC
TGTTGGAAGACTACAGTTTGTTGTCACCGATCGCCGTTGGCACTCGGCGA
CGTGCGGCCGCCACTCGTCACCTCGGCTTTGGAGAAATAACATATACTTC
CGAAGTACGAAGTTTTTTTTTTCCTTTCAAATGTGCCCGAAAAAAGGGGC
GGCGGCAGCCGTGGAAAGTGGAAATGTCAAACGCTACCACCTTTGCTATC
AGAGCGTGTTGCGTTGAGCAGCCTTTTCCCTTTCGTGTACAACAACCCGA
CCACTACTCCTGTACTTTGTTTATTTTCTCGTGTCGCACGCTACGGCAAT
GTCATCGTAGTCCTTGGAAAGTGCAGTGACGTACCCAAGATGGCCTGTGT
ATTCTACCGTTACCGACTGAAACGAAATACGAGGTATAAATGAAGACGAC
GGTCGTAGTTCTAGTTGGAGAGCAGGACAATTAGGCTGGCGGATTACGGG
TGTTCCCCCGCAAAACCCGTTTGTCAAATCGGTCAAGGCCATCCACCCCC
TGCCACCGCGCCAGCTGCATCGACACTCACGACTACTATTTCGCTTGCTA
ATGCTGCTTTATTTCATCCGGCCGTCTGCCTCCCAACGATTAAAAATGAA
GATCACGGCCAAGGTAGGAGAGCAGGAGATGCGACTGAAGGACCTCAACC
GAGTCAAGGCGGTTGCCAAACCTAAGCCGGAAGACGGTACCCTGGCACTC
CTCAGATGGCTCAATGCTTCCGGCGCTCCGAAAAAGAGATAACGGTAGAT
TGGTTTGTTGTTGCATTGTTACGGGGGAAATGTCAAGCTTGGCACGGCCT
GGGTGTGTGAAGAGAGATGGCGAACACACGTCAGGCATGAGCGGCGGAAG
TGGGTTAAACTGACCGGCTGTTTGGTAGTCCTGCGTGCCTCTAGGGGGTG
AACAGGATGTGAGACGGGGAAGCAAGGCGCGCACTTGCGCGGGGGTAGGT
GGCGTGAATATGAGGCTAAAAGGTTCCCGTATTTCGCTAGAATATCTTTG
CATTTTTGGTGCTATTTCGTTCAGAGCGGGAGCGAAAGGCAGAGAGAGTG
AGAGAGCCGTGCAGTTGCTGCACGATCGGCGTCTGCAAGGACAGCGGTAG
TTGTTCGTTTTCACGTGAGACAAGCTTGAGCTTCGTACGGAAGCACGAGA
CACTGATGCCAATACTTGAGCTCAGGAGTGAATGGTTGAGTATCGCAAGC
CCTGAGTATTCGTATACACGTTTGGTGAGGAGAAACCCTTTCTGGTGACC
CGTTAGAGCACCTTGTGCACTACGAGCAAGCGTTGCTGTGCATACGTTGC
AATTTTTGTCGCTAAAAGTGACTTGCGCTTGTGCGCGGAAGACGAGCGTA
TTGCTGTGCGTGCGAGACGAACATGCTGCGCAACTGGTGGTATCAAACGT
GCCCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:863256..867161-

>mRNA_P-littoralis_Contig17.204.1 ID=mRNA_P-littoralis_Contig17.204.1|Name=mRNA_P-littoralis_Contig17.204.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig17:863256..867161- (Pylaiella littoralis U1_48)
ATGAATCGGCTGGTGAGGTTTGGGGTCGAGGCCCTGAAGCCGCAAAAGAT
TGCCGGGGTGTACAAGTGGCGATCGCCGTTGGTGTCAAGGCGAAAGGCAA
AGGTAATGCGCAAGAAGGCTGTCAGGGACGGCTCCTTCGGCTCCGTCGTG
ATGGATGAAGACACCGGAAAGGCGATAGGGGGGTGGGATCCGGCTTGGGA
CATCTATGAAGAGCCCGCCCCGCGACCTCTTAGGCCGCAGAAGCTACACA
AAAACCAGCGGGATAGAGCAGTGCGCGCTGAGAAGATCACGGCCAAGGTA
GGAGAGCAGGAGATGCGACTGAAGGACCTCAACCGAGTCAAGGCGGTTGC
CAAACCTAAGCCGGAAGACGGTACCCTGGCACTCCTCAGATGGCTCAATG
CTTCCGGCGCTCCGAAAAAGAGATAA
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