mRNA_P-littoralis_Contig17.193.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.193.1
Unique NamemRNA_P-littoralis_Contig17.193.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A6H5JCF0_9PHAE (RibD_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF0_9PHAE)

HSP 1 Score: 438 bits (1126), Expect = 9.640e-144
Identity = 262/412 (63.59%), Postives = 288/412 (69.90%), Query Frame = 3 
Query:  192 ISMRKHVSPVSAAAAXXTTAGIAVAVVLGAAPLCCLATVAASVFHQAQPHATNPPPGDPALLDQQLSHAELRRTIEDSVLKGLATNMLCHREKVERGKLRPRPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVLATEAKTACDGAPTAAPGSGFPLPLRDVGYVQLGQDLVVVGAPAPC 1427
            + MRKHV                VA  +G  P  CL T AA+  H A P    P  G PAL+D++LS  +LR  IED VL GLA+ M  HRE+VERG+LRPRPFVTLTYAQSIDGSIA ADKSQV LSG ESRTMTHGLRSIHD ILVGAGTVRQDNPRLN+RHWPP       + GD     XXXXXXXXXX                                 AAPRAV+ +G+LS+LP SMRLG AVVFTDLSSP+AWRWLAEWA+RSREG +   ANDFVIVH  +QADGRCDVGDCLEKLYSMGFRSLMVEGGA VIS+FLRGC  +      GG   DG+LVDRVVVTIAPTFLQGYNVLATE   AC GA T +PGSGFPLPL DVG+V+LGQDLVVVGAPA C
Sbjct:  146 VRMRKHVI---------------VAAAVGLVP--CL-TAAATKVHHAHP----PTSGGPALVDERLSQQQLRHKIEDGVLSGLASGMREHRERVERGELRPRPFVTLTYAQSIDGSIAAADKSQVFLSGSESRTMTHGLRSIHDGILVGAGTVRQDNPRLNIRHWPPA------SCGDGGRGTXXXXXXXXXXDFDQARGSDAIGRRGME---------------TAAPRAVVFSGNLSQLPHSMRLGGAVVFTDLSSPDAWRWLAEWAQRSREGSEDRAANDFVIVHSPLQADGRCDVGDCLEKLYSMGFRSLMVEGGATVISSFLRGCGEQTGREEEGGGNPDGQLVDRVVVTIAPTFLQGYNVLATEGN-AC-GARTTSPGSGFPLPLLDVGFVRLGQDLVVVGAPACC 512
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: D8LE35_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE35_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 8.310e-102
Identity = 178/278 (64.03%), Postives = 193/278 (69.42%), Query Frame = 3 
Query:  594 MTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVLATEAKTACDGAPTAAPGSGFPLPLRDVGYVQLGQDLVVVGAPAPC 1427
            MTHGLRSIHD ILVGAGTVRQDNPRLN+RHWPP       + GD          X                                     AAPRAV+LAG+LS+LPRSMRLG AVVFTDLSSP+AWRWLAEWA+RSREG +   ANDFVIVH  +QADGRCDVGDCLEKLYSMGFRSLMVEGGA VIS+FLRGC  E       G   DG+LVDRVVVTIAP FLQGYNVLATE   AC GA T +PG+GFPLPL DVG+V+LGQDLVVVGAPA C
Sbjct:    1 MTHGLRSIHDGILVGAGTVRQDNPRLNIRHWPPA------SCGDGGRGTTSSEEXEEDAFDQARGSDAIGRGEKE----------------TAAPRAVVLAGNLSQLPRSMRLGGAVVFTDLSSPDAWRWLAEWAQRSREGSEDRAANDFVIVHSPLQADGRCDVGDCLEKLYSMGFRSLMVEGGATVISSFLRGCGEEMARDEEFGRNPDGQLVDRVVVTIAPMFLQGYNVLATEGN-AC-GARTTSPGAGFPLPLLDVGFVRLGQDLVVVGAPACC 254
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A835YLP6_9STRA (Dihydrofolate reductase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.410e-38
Identity = 93/227 (40.97%), Postives = 113/227 (49.78%), Query Frame = 3 
Query:  495 RPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLR 1175
            RPFVTLTYAQS+DGSIA ADK  V +SG  SR MTHGLRS+HD ILVG GTVR+DNPRLNVR W           GD                                                  PR ++L+  +  LP +++   AV+FT     E   WLA     +R       A+D VIVHC   A G CD+ DCL +L +MGF S+MVEGG  +I  FL+
Sbjct:    1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREW-------VGDSGDSQDPPP-------------------------------------------CPRPIVLSSQMG-LPMAIKAHGAVIFTSFCRAETQSWLA-----ARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQ 171
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A2H3JBV3_WOLCO (2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JBV3_WOLCO)

HSP 1 Score: 117 bits (294), Expect = 1.310e-25
Identity = 101/296 (34.12%), Postives = 135/296 (45.61%), Query Frame = 3 
Query:  483 KLRPRPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELP-----RSMRLGSA----VVFTDLSSPEAWRWLAEWAERSRE----GPQV-PTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFL------QGYNVLATEAKT 1310
            K   RP+VTLTYAQS+D  IAG    Q+ LSG ES  MTH LR++HDAI++G GT   D+P+LN RH PP+  +++                                                       PR +IL  +L   P     ++ R G      V+ T  SS      + E+++R +E    G +V   A++  + H      GR D+ D L KL   G RS+MVEGGA+VI +FL        AA GG SG     VD V+VTIAPT +       G NVLA +  T
Sbjct:   51 KSATRPYVTLTYAQSLDAKIAGPGGKQLALSGKESLVMTHWLRTLHDAIMIGIGTALNDDPQLNTRHLPPLPNAISKYHN---------------------------------------------------PRPIILDANLRLSPSCKLLKNYREGRGRRPWVISTTYSSS-----MQEYSQRKKELEDAGARVLELASEDGMEH------GRFDIPDLLAKLKLFGIRSVMVEGGASVIQSFLA-------AASGGASG---SQVDVVIVTIAPTLVGREGVEYGSNVLAGKVST 274
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A2D9DV49_9GAMM (GTP cyclohydrolase n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2D9DV49_9GAMM)

HSP 1 Score: 111 bits (277), Expect = 7.890e-24
Identity = 98/315 (31.11%), Postives = 123/315 (39.05%), Query Frame = 3 
Query:  480 GKLRPRPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRL---GSAVVFTDLSSPEAWRWLAEWAERSREGPQ-VPTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVLATEAKTACDGAPTAAPGSGFPLPLRDVGYVQLGQDLVVVG 1412
            G++  RP VTL YAQS DGSI       + LS PE   MTH LRS+HD ILVG GTV  DNPRLNVR W         T  D                                                  P+ ++L   L  LP S +L   GS            W    + AE  REG   + T  D          +G  D+   ++ LY  G R+LMVEGGA VI+ FLR                  +L D VV+T+AP  + GYN +   A  A    P   P          +   QLG +++V G
Sbjct:   23 GRIEQRPHVTLCYAQSWDGSITTGPGETLALSSPEGLRMTHQLRSLHDGILVGIGTVLADNPRLNVREW---------TGND--------------------------------------------------PQPIVLDSQL-RLPPSSKLCQNGSN------GKRPCWVLTTQQAEAKREGCDLIVTPGD---------GEGHVDLTQAMQALYQRGIRTLMVEGGAAVITAFLRT-----------------RLADAVVLTVAPVLVGGYNAIGRLADPAKVNFPHITP----------LQSEQLGDEMIVWG 235
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A1F9PLP5_9DELT (RibD_C domain-containing protein n=1 Tax=Desulfobacca sp. RBG_16_60_12 TaxID=1797909 RepID=A0A1F9PLP5_9DELT)

HSP 1 Score: 110 bits (274), Expect = 1.320e-23
Identity = 97/310 (31.29%), Postives = 131/310 (42.26%), Query Frame = 3 
Query:  495 RPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVR--HWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVLATEAKTACDGAPTAAPGSGFPLPLRDVGYVQLGQDLVVVGAP 1418
            RPFVTL+YAQS+DGSIA      + LSGP++  +THGLR+ H+AILVG GTV  DNPRLNVR    P  +P V  +                                                 +   P A +L  S          GS  + T+  +    R + E  E       +P  N +V            D+   LE+L SMG  SLMVEGGA +I++FL                   +LVD+VV+TIAP  + G  V+     ++    P           L+++ Y QLG DLV+ G P
Sbjct:   13 RPFVTLSYAQSLDGSIADRPGRPLALSGPQAMALTHGLRAAHEAILVGIGTVLADNPRLNVRLVEGPDPQPVVVDSR------------------------------------------------LRFPPYAALLKNS----------GSPFIATNEGADAERRQVLE--EAGARVLVLPGRNGWV------------DLAGLLEQLGSMGINSLMVEGGAQIITSFLTS-----------------RLVDQVVLTIAPLLVGGLRVVNHLGHSSHRRFPR----------LKNLSYQQLGDDLVLRGEP 223
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A8H5LT06_9AGAR (2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5LT06_9AGAR)

HSP 1 Score: 110 bits (276), Expect = 1.620e-23
Identity = 84/266 (31.58%), Postives = 112/266 (42.11%), Query Frame = 3 
Query:  495 RPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFV------IVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFL 1274
            RP VTLT+AQS+D  IAG +  Q+ LSG ES  MTH +R++HDAI++G GT   D+P+LN RH PP  P+ A    D                                                  PR VIL   L   P S  L +   +   S    W +       S + P V    D +      I+      DG   +   L+ L+ MG RSLMVEGGA VI +F               +    +LVD ++VT+APTF+
Sbjct:   24 RPHVTLTFAQSVDAKIAGQNGKQLILSGKESMVMTHWMRTMHDAIMIGIGTAFNDDPQLNTRHLPPRPPNPAQNGHDKPYHL---------------------------------------------PRPVILDTHLRFSPTSKLLKN---YQQGSGRRPWVFC------SSDAPDVKRKQDALEQAGARIIQISGVEDGHLSLPAVLKSLHDMGIRSLMVEGGARVIRSFFS-------------ASTSSRLVDSIIVTVAPTFV 222
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A5J6P8K7_9GAMM (GTP cyclohydrolase n=1 Tax=Cellvibrio sp. KY-GH-1 TaxID=2303332 RepID=A0A5J6P8K7_9GAMM)

HSP 1 Score: 108 bits (271), Expect = 4.330e-23
Identity = 86/273 (31.50%), Postives = 116/273 (42.49%), Query Frame = 3 
Query:  495 RPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAV-----VFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQ--ADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVL 1292
            RPFVTL+YAQS+DGSIA      + LSG ES  +TH LRS+HD ILVG GTV  D+P+LNVRHW                                                              +P+ ++L   L  +P   RL         + T  S+        +W+E+  EG ++          C +Q  ADGR  + + L  LY  G R LMVEGGANVI+ F++                  +LVD VV+T+ P F+ GY  +
Sbjct:   23 RPFVTLSYAQSLDGSIALRSCEPLALSGSESLRLTHQLRSLHDGILVGIGTVLADDPQLNVRHWS-----------------------------------------------------------GLSPQPIVLDSQL-RMPSDARLRQCAEKPCWILTTQSN--------QWSEQ--EGAEI----------CSLQPGADGRVCLQNALALLYEKGIRQLMVEGGANVITAFIKA-----------------QLVDVVVITLVPKFVGGYKAV 198
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: UPI000D3C1FC3 (RibD family protein n=1 Tax=Saccharospirillum mangrovi TaxID=2161747 RepID=UPI000D3C1FC3)

HSP 1 Score: 108 bits (269), Expect = 7.820e-23
Identity = 96/316 (30.38%), Postives = 126/316 (39.87%), Query Frame = 3 
Query:  465 EKVERGKLRPRPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQADGRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVLATEAKTACDGAPTAAPGSGFPLPLRDVGYVQLGQDLVVVG 1412
            +K  +     RP VTL+YAQS DGSI  A    + LS   S  MTH LRS+HD ILVG GTV  DNPRLNVR W                                                               P+ ++L   L  LP S +L          S E   W+      + EG      +D  ++     ADG+ ++   +  LY  G RSLMVEGGA+VI+ FLR                   L D V++T+AP F+ GY  +         G  +AA    FP  + D+   QLG +L+V G
Sbjct:   15 QKAAQDSAPGRPHVTLSYAQSWDGSITTAPGETLALSSDASMQMTHQLRSLHDGILVGIGTVLADNPRLNVRKW-----------------------------------------------------------TGKDPQPIVLDSQL-RLPPSSQL--------CQSAERGCWVL-----TTEG--ATDRDDCELIVVPGDADGQVNLHAAMAALYERGIRSLMVEGGASVITAFLRAA-----------------LADAVILTVAPVFVGGYKAV---------GELSAANSLPFPH-IDDLHSQQLGNELIVWG 228
[Close]
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Match: A0A7X1GW34_9DELT (RibD family protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7X1GW34_9DELT)

HSP 1 Score: 107 bits (267), Expect = 1.450e-22
Identity = 94/310 (30.32%), Postives = 131/310 (42.26%), Query Frame = 3 
Query:  495 RPFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGTVRQDNPRLNVRHWPPVEPSVAPTEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPRAVILAGSLSELPRSMRLGSAVVFTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQAD-GRCDVGDCLEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRVVVTIAPTFLQGYNVLATEAKTACDGAPTAAP-GSGFPLPLRDVGYVQLGQDLVVVGAP 1418
            RPFVT++YAQSIDGSIA   +  + +SGP +  MTHGLR++HD ILVG  TV  D+P+L+VR            EG                                                   P+ V+L   L   P   RL        L   +   WL   A+  ++   + TA    ++ CR + + GR D+   L  L+  G R LMVEGGA VI++F+R                  +LVD  ++TIAP  + G  V+            TA P GS  P+ L ++ Y +L  DLV+   P
Sbjct:   20 RPFVTVSYAQSIDGSIATRRRRPLPISGPGAMRMTHGLRALHDGILVGIETVLADDPQLSVRL----------VEGPH-------------------------------------------------PQPVVLDTRL-RTPLEARL--------LKGGDGRPWLVGAADNPQDKVTIMTAAGADVLPCRREENNGRLDLTQTLSILHKRGIRRLMVEGGARVITSFIRA-----------------QLVDLFIITIAPKLVGGLQVM------------TAPPNGSEAPMALTEIHYDRLEDDLVLWARP 232
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCF0_9PHAE9.640e-14463.59RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LE35_ECTSI8.310e-10264.03RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YLP6_9STRA2.410e-3840.97Dihydrofolate reductase-like domain-containing pro... [more]
A0A2H3JBV3_WOLCO1.310e-2534.122,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-p... [more]
A0A2D9DV49_9GAMM7.890e-2431.11GTP cyclohydrolase n=4 Tax=Gammaproteobacteria Tax... [more]
A0A1F9PLP5_9DELT1.320e-2331.29RibD_C domain-containing protein n=1 Tax=Desulfoba... [more]
A0A8H5LT06_9AGAR1.620e-2331.582,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-p... [more]
A0A5J6P8K7_9GAMM4.330e-2331.50GTP cyclohydrolase n=1 Tax=Cellvibrio sp. KY-GH-1 ... [more]
UPI000D3C1FC37.820e-2330.38RibD family protein n=1 Tax=Saccharospirillum mang... [more]
A0A7X1GW34_9DELT1.450e-2230.32RibD family protein n=1 Tax=Desulfobacteraceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:792620..799569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1134474.O59_002106
PFAMsRibD_C
Model size2040
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00204,RC00933
KEGG koko:K00082,ko:K11752
KEGG ReactionR03458,R03459
KEGG Pathwayko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024
KEGG ModuleM00125
Hectar predicted targeting categorysignal peptide
Exons6
Evalue4.59e-24
EggNOG OGsCOG1985@1|root,COG1985@2|Bacteria,1RES9@1224|Proteobacteria,1S3BT@1236|Gammaproteobacteria,1FI28@10|Cellvibrio
Ec32 ortholog descriptionDihydrofolate reductase-like domain
Ec32 orthologEc-05_004210.1
EC1.1.1.193,3.5.4.26
DescriptionRibD C-terminal domain
Cds size1245
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.193.1prot_P-littoralis_Contig17.193.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 793218..799372 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789821.0733364-UTR-P-littoralis_Contig17:792619..7932171680789821.0733364-UTR-P-littoralis_Contig17:792619..793217Pylaiella littoralis U1_48UTRP-littoralis_Contig17 792620..793217 -
1680789821.1615016-UTR-P-littoralis_Contig17:799372..7995691680789821.1615016-UTR-P-littoralis_Contig17:799372..799569Pylaiella littoralis U1_48UTRP-littoralis_Contig17 799373..799569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789821.0940948-CDS-P-littoralis_Contig17:793217..7933121680789821.0940948-CDS-P-littoralis_Contig17:793217..793312Pylaiella littoralis U1_48CDSP-littoralis_Contig17 793218..793312 -
1680789821.1110904-CDS-P-littoralis_Contig17:793584..7937891680789821.1110904-CDS-P-littoralis_Contig17:793584..793789Pylaiella littoralis U1_48CDSP-littoralis_Contig17 793585..793789 -
1680789821.1241663-CDS-P-littoralis_Contig17:794290..7944531680789821.1241663-CDS-P-littoralis_Contig17:794290..794453Pylaiella littoralis U1_48CDSP-littoralis_Contig17 794291..794453 -
1680789821.133144-CDS-P-littoralis_Contig17:795240..7955521680789821.133144-CDS-P-littoralis_Contig17:795240..795552Pylaiella littoralis U1_48CDSP-littoralis_Contig17 795241..795552 -
1680789821.1424088-CDS-P-littoralis_Contig17:796232..7963361680789821.1424088-CDS-P-littoralis_Contig17:796232..796336Pylaiella littoralis U1_48CDSP-littoralis_Contig17 796233..796336 -
1680789821.1519582-CDS-P-littoralis_Contig17:799006..7993721680789821.1519582-CDS-P-littoralis_Contig17:799006..799372Pylaiella littoralis U1_48CDSP-littoralis_Contig17 799007..799372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.193.1

>prot_P-littoralis_Contig17.193.1 ID=prot_P-littoralis_Contig17.193.1|Name=mRNA_P-littoralis_Contig17.193.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=415bp
MRKHVSPVSAAAAAATTAGIAVAVVLGAAPLCCLATVAASVFHQAQPHAT
NPPPGDPALLDQQLSHAELRRTIEDSVLKGLATNMLCHREKVERGKLRPR
PFVTLTYAQSIDGSIAGADKSQVCLSGPESRTMTHGLRSIHDAILVGAGT
VRQDNPRLNVRHWPPVEPSVAPTEGDSSSSDSYGSDEGGAHGRPNNGPDT
ARGSGGGDESGSGSGSGSESGAVAAAPRAVILAGSLSELPRSMRLGSAVV
FTDLSSPEAWRWLAEWAERSREGPQVPTANDFVIVHCRVQADGRCDVGDC
LEKLYSMGFRSLMVEGGANVISTFLRGCCREGLAAGGGGSGVDGKLVDRV
VVTIAPTFLQGYNVLATEAKTACDGAPTAAPGSGFPLPLRDVGYVQLGQD
LVVVGAPAPCGDYL*
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mRNA from alignment at P-littoralis_Contig17:792620..799569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.193.1 ID=mRNA_P-littoralis_Contig17.193.1|Name=mRNA_P-littoralis_Contig17.193.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6950bp|location=Sequence derived from alignment at P-littoralis_Contig17:792620..799569- (Pylaiella littoralis U1_48)
TTGGAATATTGCCGATTGCCGGTGTGAGATGCGTCACGCTGTCACGCTGT
CACCTCGAAGGCCCCTGCCGGCTACCCCCCTTTGCCTTGACCAAGGGTGT
GCCCTACTTACGAAACTTGACGCACATCGCCACTGATCACCACACGGGAC
GTTGGGAGCGCCAGCGTGGCCGTCATCATTCGAAGCGGCGCATCTCCATG
CGTAAGCATGTTTCGCCAGTGTCGGCAGCAGCAGCAGCAGCAACAACAGC
AGGAATAGCAGTAGCAGTTGTTCTTGGTGCAGCCCCGCTCTGCTGCCTCG
CAACAGTGGCGGCCTCAGTTTTCCACCAAGCTCAGCCGCATGCCACGAAC
CCCCCCCCTGGTGATCCCGCACTGCTCGACCAGCAGCTGAGTCATGCAGA
GCTCCGTCGTACGATCGAAGACAGCGTTCTGAAGGGGCTGGCGACGAACA
TGCTGTGTCACAGGGAGAAGGTCGAGCGAGGGAAGCTGCGACCCCGGCCG
TTTGTAACGCTGACCTACGCTCAGAGCATCGACGGTAGTATTGCGGGTGC
GGACAAGTCCCAGGTGAGGCGCCCTATGGTCTCGAGGTTTCCGGATTGTG
TGAGGTGGGGTCACATCTCCCCGCGTCTGTGCAGCAGTTTTTGAATTCAA
AACCACCGCCTCCTCCTCCTAAAAGTACAAAAAATTCCCATGTTTTATGT
ATGATATGGATACCATGTGCGTTCAAAGTAGGTTCGTGTATCATAAGCAT
GTGGATGTGGGCTGTGATACGTCTAATTCTGGACCCCAATCTGCCTCTTA
TTATCAGGCAACAGGTTGGTAGCACCAGCCGGGTCGGGATCTGTCTTGAC
TGAAAATGTCCCCATCGAAAATCGAAAATCGAAAATCGAAAATCGAGAAT
AGATTTCCACTTCAGAAAGCGGGTTCCGGCCGATGTGTATATGCCTGCTT
TCATAGTGCAAAAATCTGAAAAATCTAAAAAGCTGAGGACTGACGACACA
AAAAATACTTCGTACTTAGACTTGCAGTACGAGAAAGGTTACGGGAATTG
AGTGTTCGTTGGTGTGGCCGCTTCTCAAATGACTGTGTTGAGCCGTATGC
GTTGCTGTTTGGTGGCGTATACTTGTACTGTCTGTTGCTGCAGCTCTGCA
GCTCGTGTTCCGCGAGCACAACGAACACAAAATGCCTCTCATCAACTTTC
ACAAAAAGGGACACCGATAATTACTCGCCTTGACAACATAGCTGTGCGCA
TAAGAGACGGGCTGCAGTGAACCCGGCAGCAAGGGTAGATGCTATTTACC
TCACCAGTTCAAGCCCTTGGTCGTAATGATCTGTGCTGAACTGGTGCCGT
AGTGTTGCAAAATGTGGACGTTATCTCAGACAGACACTTCGCTGCGCTCG
TGGACTGCTTGTCGATAAAAAAAAAGAAGTAGGAACGACCAGCGAGTCAG
ACGATAGATGGTCGTGCAATGCATATTGTGACGATTCCAAGGCCAGTGCG
GGAGCTACCTTGCCTCAAAGCAGTGCACAATAGTGTCCCATGTCGGCAAG
ACTCAGGCGCGATGGCAGAACTTTACTCTGGATCGATAACCGAAGAACTT
AGCAAGAAATTTTTTGCGTGTTGAACATTCTGCCTGTTTGGAGGTCATCA
AGCCCAAACAAATGCAAAATGTCGGCCGTTTGAGCAACAGTATTTCACGC
GAATGAGCACTTGCTCAGTGCTCAGCAGACTCCGCTCAAACCAAGAAGTC
GGTGCTCTGGGGGATACCGGCTTTGTGTGAAGGCACCCCATGCTTACAGC
AGGCGCCTACAAGCTGTGTTGTGATATTGTCAGGAAAAGCATGCTGATGT
GCTCCCAAAATGCACAGCAGCACCGCTGTTTCACCTGCGTGACCAGCCGT
GACCAACGACTTCCTGCTCTTCGGATTCTCATCAAAATCCGCTCAAACGG
GATAGCAGCTTTCTGCGGAGGTATCACGTATGGCTCCCGGACAGCATGGC
AAACACTCCTCTCTTGCTTCATGGTCTGCTCGTTTTTTTTACCGTATTTT
CGATCTATTCAGCTTATCTTTTTTCGGAACAGAAAGCTGATTTCTTACAT
CTTGAGGACGTCGAACGTTGGCCAACGAGAGCCATTTTCGATATTTGACT
ATCGATGTTGAATGCCCGGTTCGGCCGGCCTGTTAAGGCCGACCCGACCG
TGTCTCAGATCAAAAGTTGGCGCGTGGAAAGTGGAACGTTGAACGTAGAA
CTTAGATTCCTTGTTCCCTGTTACACGCGTCGTATCTTGGATAAGAAAAA
GCTATGCCGAAATGCGGAACATGAAACCTGGTTTCAGGCGAAAAGCCTTA
AGGAAAGCTACTCGCTGCTGCTGCTTTTTTTTGCTTGCTTTCAACACGAT
ACACACGCACACACGCACACACAGCACAAAACACGCAGCACAGCACGGCA
CCACACATCTACTGCACCACGGGGGTGACGGTTTGTACCGGTACTTGCAT
GAAAAAAAAGGTCGTTCTTCGAAGTTTCCCGTGATGAACGTGTGCTGGCT
ATCACTCAACCGAGGTTGCACGGGGTTGGGGATGTCGTTACATAGACTCT
GCTGCTGCTGATGACCACTCTCAAAAGCTCAACCTGCGCTGTGGAAGCTG
TCTGCCCCACTGGTGCAAGAGGACGTGGTATTGCAGTAGAGGCAACAAGC
GGCATACAAGGCTGATACCACAGGGTTGACGGGTCCATGGACTGCTGAAG
TGTTCTGTAGCCTCTTCCATACCTCACGCCGAGACGCAGACCCTGCGGAC
AAGCTACAGGATTGGAGAGTTCGTTGCGAAAAAGGGAAATTCGGGGACGT
GAAAACGGAACTTAGGCCTACTTCTGTCGCTGCAGGATCAGCGATGTTTT
TGAAACTGTGCACGTCGATGAGGCGGTGCAGGTGAATTCTCGACGGTAAA
CCACTTCGACGCACTGCTACACACTCTCCCTTTTTATCGACAATCATTTT
TGAGTTTCCGTTGTTGTTTTACCGTGTAACTTATGGAATAAAGTTTTACT
TCTCAAGGGCGCACATGGACTTTATTTTTTGACAAACCCGAAAAACAGGA
TGGCGGATTGACTGTCACTTTAAGGGGATGCTGTAAGTACGTGGCCGCTT
TCGCATGCGAACAGCGCAATTGGACAACGGGCTCCCGTTGGCCTTGTTTG
TGCGGTACTCGTACCGTGTCTTTTTTTTCCCAGGTGTGCCTTAGCGGGCC
GGAAAGCCGAACGATGACGCACGGCTTGCGGTCCATCCACGACGCTATTC
TTGTAGGGGCTGGGACGGTACGACAAGATAACCCGAGGTTCGCCCGCAAC
GTTTGACAACCGGTTACACTTTGCGCCCATCTGCATGTACAGCAGCGGTT
GCAGGGTTTCAAGGTAGCATCGATCGTGCTTCTTTGATGTCATACGATTC
GTGCAAAAAGGTGCTGAGCGCGCAAGCTAGACGGGCGTGTTGCGTTTGTG
ACGGTGTTTAGTTTCGTCGAGCGCGTGGGTTGGGTGGCTGTTCGGGTTTT
TGGATTGATTCGCCGTGCACTCTCAGCGTGACTCAGCGATGGTTCGTGCC
CGCGTGTCCTGAAGCATGTTCACCTGTATGCTGTCAAGGATGTGTGCCTG
CGTGTGTGCACACAGCCGAACGATGGTCACAGCACTTGCTATCTGTGCCC
CCCCCCCCCACCGCGCTATACTCCGTAAGACACAAAAGAGTGACCAGTCT
CAAGTACAACCACGCTGAACAGGCACACGTTTTGATACAACCAACACCCG
CAGCAGTAAGTAGGTGTCCAATGGCATTTGGTCTCTCGCGCTGTTTTCGA
GATACATTGAATCGGGTGATTCGATGCGGCGTAACTGGTGCATGCATGCA
GTGATGCGAATCAAGTATGTGTTCACGAATGACGCACGCACGCCCACACC
GCCCACTTTAACCTGCCCTCTGCTGTACGCTGGCAAATACTGTTGTCTCC
CCACGTGCACCCACCAGGCTCAATGTCCGACACTGGCCTCCGGTAGAGCC
GTCTGTCGCCCCCACCGAGGGCGACAGCAGCAGTAGCGATAGTTACGGTT
CCGATGAGGGAGGTGCCCATGGCCGACCAAACAATGGCCCTGACACCGCT
CGTGGGAGTGGGGGTGGGGATGAGAGTGGGAGTGGGAGTGGGAGTGGGAG
TGAGAGTGGGGCAGTAGCAGCAGCTCCACGAGCAGTTATTCTGGCGGGCA
GCCTCAGCGAGTTGCCACGGTCCATGCGCTTGGGCAGCGCGGTGGTCTTC
ACGGACCTGTCGTCTCCCGAAGCATGGAGGTAAGGGGGGTTCGGGGGTGT
GGCGACTTAGTCAGTGTTAATCGTGGATCTAGCGCGCCCCTGATGCGATG
TTCGGTTGCAGTCGTTGAGCATGAATATAGCTGGTTCATGCCGTGGCGTC
TTTTGGGGCGTACGACTGCTTCCTTCCTGCCTACTTTTGGTTGAAATCTA
TCAATACAAGCATTGTCAAGCACGCGCACTTTACTGTACTGGCCCGAGAC
TCCTCTGCTTCGCCGGCTGGGTATCTACCATTTTTTTGCCGGCCCAAAAT
TTGTCGCTTCGTGTCGAGAGCATGTGCGTCGTAAGTGCTTCCATGATTTG
GGACGAAAGAGCTGCGCCCGGTCTCGTTGTAACTTTTTGCGAAGGCGTGC
TAGTATCGGTTCCATCTTATCGCAACCTGCTGTGACAAGGGTATCGCCCG
GCCTGGAACTTCCGGGAGTGCGCTCGCCGCTGCGGTGTCGTGAGTTGTTT
TGTTTTGACGGCGACGTGGCATATGCGCTCCAGTGTCAGAACCGTTCGAA
GTTTCCACGAAGTCGCCTCCGCGTTCTTGTTCGTCCTTCGTGTTGGACGT
AGGCGGAAGGGGGGTCGCATGATGAATGGGGGTGAGGACGGGGGGGGGGG
GGGGGGTGAGATATCCTCGAATTTTTCCGAAATTCACGGCGGGGTCGTAT
CGTAGGTTCCTCTCCCGATTCGATAATTGTAGCTTGCCATGAATCCGGAG
ATTCGTGTCTTCCTTCTCTCTCACCTTGAAACAGACAAACAAAAAATTTC
CAACTTGCCGCTAAAGGTGGCTAGCCGAATGGGCAGAGAGAAGCAGGGAG
GGGCCGCAGGTCCCTACGGCGAACGATTTCGTTATTGTTCACTGCCGAGT
GCAGGCTGATGGCCGCTGTGACGTGGGTGACTGCCTCGAAAAGCTCTACT
CAATGGGCTTCAGGAGTCTTATGGTCGAGGTAAGTGTTTTACGCTTCATT
TTTTGCCGCCTGCGCGAGCGCTGTTGTGGCGTGCACGTGCGCGTCGTGTT
CGCCCGCACACATGTTCCAGAAACACGGAAAGTGCTAAGTCATTGGTAAT
TGTAGATAAACTCTTGTTGTGTTTCTGCACAGGGTGGTGCGTGCGTGCGC
CTACCGCTGGGACACGGAACTTGTTCCGGGCTTGCTTGTAAGGGTTTGTG
AACCGCACGTTTTCTGCTTTCAAGAGTTTCGCATTTGTTTTCCCGTGTCA
ACTTTCTTGCCCTGCGTCGGCTAGCCTGGCAGGCGCTGTACAGTAGCCCA
TACATTTCCGGCCTCAAGTGTCGCTTGCTTCTTGTTGACCTCCCTGCTCA
GGATGTCAGTCGTAGCTTCCCTCCCGTACTCATTGCTGAAGTGTTCGTCT
ATCTCGCCTCTCAGCGACCGCTTCTTTTTCTTTTGCGTGGCGTGCCGTCG
ATTGTACGTTGTCTGTGTTTTGTGTCTCAGGGGGGGGCTAACGTAATCTC
GACGTTCTTGCGAGGGTGTTGCAGAGAAGGCTTGGCCGCGGGGGGGGGCG
GCTCCGGCGTCGACGGGAAGCTCGTTGACCGCGTAGTAGTAACGATCGCG
CCGACGTTTCTTCAGGGCTACAACGTTTTGGCTACAGAAGCCAAGACCGC
GTGCGACGGCGCACCCACTGCTGCCCCGGGCTCAGGTGCGAATAAATTTG
GTGTGTGTTTCCTGCTGCTGCTACTGCTGCTGCTGCTGCCTATCCAACAA
TCAGGATCGAACAGCCAGCCAGTAAGGCATGGCACCGATACGGTAACAGT
GAACCTGGCCAGCCAATGAATGAAGTAGGTTTGCAATCAACACCTCTTTT
AACTAGGCAAATGTAAACGCTTGGCAGCTGAAACATCAAAATGCCCCCCC
AACACTCACCCTGATTTTCTCATTTTATCTGTCCAATATGCCTCCGTCGT
TGTCCAGGGTTTCCCCTGCCCCTGCGGGACGTGGGTTATGTGCAGTTGGG
GCAGGACCTCGTGGTGGTTGGGGCGCCGGCCCCTTGCGGGGATTACTTGT
GACATTGTCAGTGCAGACGTTTACACGTCCGTACGCTATTTGCAACAACA
GAGTGTTGAAGCAGTGTTTCGGTGGGCGCACAACATGGAACCTGCATGTG
CCACTTTTTTTTTTGACCCTCGTGTAGCAGTCGGTTTTCCTTACCAGTGG
TTTGTATTTTCACACGGAATGAGAGAGAGGGAGAGAGATAAAGAAAGATA
GATGATCAGAGCAGTGTTGTTTATTGCACGCGGTGTACAGGTCAGACAAG
AACTACGCCCGACCTGTCTCCGGTGCAGTACTTTCGCTAGATTGAAATGC
CATGAAATCAGCGGCGACGACGGAAAGGTTTTTGCAAAGCTTTTTGTCTC
TCTTCCTCGCTCTCCGTAAGGTTGTTTGGCCCATCAGGCCTACCGCAGCA
GTCCGAGTCGTTCACGTTGTGATAAAGAGGTTCCCTGCTGATTGTTGTTT
TTTGTACTTTGCAACACAAAGCTTTTCTTGTCGGAATTTTTGCATCGAAA
AATTATAGAGCGGACAATTGTAAGGATTCATTTTCAAACCGCCATAACTT
GGAGGGTGGGTGAATCGCCGACAAATAAAATTGCTCTGCTTCTGTTTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:792620..799569-

>mRNA_P-littoralis_Contig17.193.1 ID=mRNA_P-littoralis_Contig17.193.1|Name=mRNA_P-littoralis_Contig17.193.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig17:792620..799569- (Pylaiella littoralis U1_48)
ATGCGTAAGCATGTTTCGCCAGTGTCGGCAGCAGCAGCAGCAGCAACAAC
AGCAGGAATAGCAGTAGCAGTTGTTCTTGGTGCAGCCCCGCTCTGCTGCC
TCGCAACAGTGGCGGCCTCAGTTTTCCACCAAGCTCAGCCGCATGCCACG
AACCCCCCCCCTGGTGATCCCGCACTGCTCGACCAGCAGCTGAGTCATGC
AGAGCTCCGTCGTACGATCGAAGACAGCGTTCTGAAGGGGCTGGCGACGA
ACATGCTGTGTCACAGGGAGAAGGTCGAGCGAGGGAAGCTGCGACCCCGG
CCGTTTGTAACGCTGACCTACGCTCAGAGCATCGACGGTAGTATTGCGGG
TGCGGACAAGTCCCAGGTGTGCCTTAGCGGGCCGGAAAGCCGAACGATGA
CGCACGGCTTGCGGTCCATCCACGACGCTATTCTTGTAGGGGCTGGGACG
GTACGACAAGATAACCCGAGGCTCAATGTCCGACACTGGCCTCCGGTAGA
GCCGTCTGTCGCCCCCACCGAGGGCGACAGCAGCAGTAGCGATAGTTACG
GTTCCGATGAGGGAGGTGCCCATGGCCGACCAAACAATGGCCCTGACACC
GCTCGTGGGAGTGGGGGTGGGGATGAGAGTGGGAGTGGGAGTGGGAGTGG
GAGTGAGAGTGGGGCAGTAGCAGCAGCTCCACGAGCAGTTATTCTGGCGG
GCAGCCTCAGCGAGTTGCCACGGTCCATGCGCTTGGGCAGCGCGGTGGTC
TTCACGGACCTGTCGTCTCCCGAAGCATGGAGGTGGCTAGCCGAATGGGC
AGAGAGAAGCAGGGAGGGGCCGCAGGTCCCTACGGCGAACGATTTCGTTA
TTGTTCACTGCCGAGTGCAGGCTGATGGCCGCTGTGACGTGGGTGACTGC
CTCGAAAAGCTCTACTCAATGGGCTTCAGGAGTCTTATGGTCGAGGGGGG
GGCTAACGTAATCTCGACGTTCTTGCGAGGGTGTTGCAGAGAAGGCTTGG
CCGCGGGGGGGGGCGGCTCCGGCGTCGACGGGAAGCTCGTTGACCGCGTA
GTAGTAACGATCGCGCCGACGTTTCTTCAGGGCTACAACGTTTTGGCTAC
AGAAGCCAAGACCGCGTGCGACGGCGCACCCACTGCTGCCCCGGGCTCAG
GGTTTCCCCTGCCCCTGCGGGACGTGGGTTATGTGCAGTTGGGGCAGGAC
CTCGTGGTGGTTGGGGCGCCGGCCCCTTGCGGGGATTACTTGTGA
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