mRNA_P-littoralis_Contig1025.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1025.33.1
Unique NamemRNA_P-littoralis_Contig1025.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.990e-48
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:   10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLTTP 360
            GVSDE+++R    I++FL GIGFTALN +PP    DP VP  EEARARGR EL RD+R+FDWDD+GECE +YKNLVNACMRHTR G YCL NGRC+FGFPKPR+  L LEAH LTTP
Sbjct:  208 GVSDEDMSRVKDGISSFLCGIGFTALNLEPPPTPADPQVPTSEEARARGRDELARDLRAFDWDDVGECERRYKNLVNACMRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTP 324
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BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.190e-47
Identity = 81/117 (69.23%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:   10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLTTP 360
            GV DE+++R    I++FL GIGFTALN +PP    DP VP  EEARARGR EL RD+R+FDWDD+GECE +YKNLVNACMRHTR G YCL NGRC+FGFPKPR+  L LEAH LTTP
Sbjct:  520 GVGDEDMSRVKDGISSFLCGIGFTALNLEPPPTPADPQVPTSEEARARGRDELARDLRAFDWDDVGECERRYKNLVNACMRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTP 636
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BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KCP2_9PHAE (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP2_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.280e-41
Identity = 72/110 (65.45%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLE 339
            GVSDE+++R    I++FL GIGFTA+N +PP    DP VP  EEARARGR EL RD+R+FDWDD+GECE +YKNLVNACMRH R G  CL NGRC+FGFPKPR+  L  E
Sbjct:  808 GVSDEDMSRVKDGISSFLCGIGFTAVNLEPPPTPADPQVPTSEEARARGRDELARDLRAFDWDDVGECERRYKNLVNACMRHIRHGGCCLVNGRCRFGFPKPRQXELARE 917
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BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.030e-30
Identity = 62/115 (53.91%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLT 354
            GV DE + R   +I  FL  +GFTA N   PA       P+GEEA AR R+ELER MR F W D+ EC  +Y NLVN   RHT+CG YCL+NGRC+FGFPK R  R+ L+ H LT
Sbjct:  662 GVPDEFV-RVQEDIVRFLEKVGFTARNPSLPAD----DTPVGEEACARSREELERYMRDFPWHDVDECRRRYANLVNGAQRHTKCGPYCLRNGRCRFGFPKKRDGRMRLDPHPLT 771
[Close]
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KVL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.480e-9
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  247 MRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLTTP 360
            MRHTR G YCL NGRC+FGFPKPR+  L LEAH LTTP
Sbjct:    1 MRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTP 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIQ7_9PHAE2.990e-4870.09ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KFJ0_9PHAE1.190e-4769.23ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KCP2_9PHAE3.280e-4165.45Helitron_like_N domain-containing protein (Fragmen... [more]
A0A6H5K692_9PHAE5.030e-3053.91ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KVL0_9PHAE1.480e-976.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1025contigP-littoralis_Contig1025:74098..74583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size486
Hectar predicted targeting categoryother localisation
Exons1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789363.8110988-CDS-P-littoralis_Contig1025:74097..745831680789363.8110988-CDS-P-littoralis_Contig1025:74097..74583Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 74098..74583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1025.33.1prot_P-littoralis_Contig1025.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1025 74098..74583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1025.33.1

>prot_P-littoralis_Contig1025.33.1 ID=prot_P-littoralis_Contig1025.33.1|Name=mRNA_P-littoralis_Contig1025.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
RRRGVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARA
RGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQF
GFPKPRRTRLTLEAHRLTTPRRHAAERFAHGGGGGRGRRLRPLRQPAHRR
PVAWLGLQRGLV
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mRNA from alignment at P-littoralis_Contig1025:74098..74583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1025.33.1 ID=mRNA_P-littoralis_Contig1025.33.1|Name=mRNA_P-littoralis_Contig1025.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1025:74098..74583+ (Pylaiella littoralis U1_48)
CGGAGACGGGGCGTCAGCGATGAAGAGATCGCTCGCTGTGTGGCTGAGAT
AGCCACCTTCTTGAACGGCATAGGCTTCACCGCGCTTAACCAGGACCCGC
CGGCTCAAGCCGGAGATCCGACAGTTCCGATAGGCGAAGAAGCTCGGGCC
CGCGGCAGGCAGGAGCTTGAACGGGACATGCGCAGCTTCGATTGGGACGA
CATCGGCGAGTGCGAAAGCCAGTACAAGAATCTCGTCAACGCGTGCATGC
GCCACACGAGGTGCGGGGCTTACTGCCTCAAGAACGGCCGCTGCCAGTTT
GGGTTCCCCAAACCCCGCCGAACACGGTTGACCCTCGAGGCACACCGGCT
CACGACCCCTCGTCGCCACGCCGCAGAACGCTTTGCCCACGGCGGAGGGG
GAGGAAGAGGAAGGCGACTTCGACCCCTTCGTCAACCGGCACATCGTCGT
CCAGTTGCTTGGCTGGGGTTGCAACGTGGACTTGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1025:74098..74583+

>mRNA_P-littoralis_Contig1025.33.1 ID=mRNA_P-littoralis_Contig1025.33.1|Name=mRNA_P-littoralis_Contig1025.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1025:74098..74583+ (Pylaiella littoralis U1_48)
CGGAGACGGGGCGTCAGCGATGAAGAGATCGCTCGCTGTGTGGCTGAGAT
AGCCACCTTCTTGAACGGCATAGGCTTCACCGCGCTTAACCAGGACCCGC
CGGCTCAAGCCGGAGATCCGACAGTTCCGATAGGCGAAGAAGCTCGGGCC
CGCGGCAGGCAGGAGCTTGAACGGGACATGCGCAGCTTCGATTGGGACGA
CATCGGCGAGTGCGAAAGCCAGTACAAGAATCTCGTCAACGCGTGCATGC
GCCACACGAGGTGCGGGGCTTACTGCCTCAAGAACGGCCGCTGCCAGTTT
GGGTTCCCCAAACCCCGCCGAACACGGTTGACCCTCGAGGCACACCGGCT
CACGACCCCTCGTCGCCACGCCGCAGAACGCTTTGCCCACGGCGGAGGGG
GAGGAAGAGGAAGGCGACTTCGACCCCTTCGTCAACCGGCACATCGTCGT
CCAGTTGCTTGGCTGGGGTTGCAACGTGGACTTGTC
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