mRNA_P-littoralis_Contig17.155.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: A0A6H5JA75_9PHAE (Rhomboid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA75_9PHAE) HSP 1 Score: 385 bits (989), Expect = 2.960e-125 Identity = 218/308 (70.78%), Postives = 240/308 (77.92%), Query Frame = 3
Query: 282 LGIFNSDGGSSGPPRGGGLGRXXXXXXXXXXXXDDGA-DVMGDMMALGAAQVIMTASDKRXXXXXXXXXXXXXLRGGYRRRSAYGRRRMRCRQMFGGSGRNKGITATNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAFTGENYIVDKSFELALPR 1202
G +SD GSSGPPR GGLGR XXXXXXXXX + D GDMMALGAA V+ X LRGGYRRRS +GRR ++ + GGSG GITATN LLALN +VY FQ R+PAITKAGWK+APAITQQGQWYRLLTP+ LHGS THL VNSMSFS+ GPVVE VMGK KF+ VY +AG+AGNVLSCIVNPRTP+VGASGAIFGMVGAW AFC+MNETVLGRN SQ ALRNVAQTVMINVVYGM SSQIDNMGHLGGFLGGA +TFLIGPR R N +TG+ YIVD+SF+L PR
Sbjct: 121 FGGLDSDSGSSGPPRSGGLGRGXXXXXXXXXNDGENTEDSKGDMMALGAAHVMXXXXXXXXADSSQPEST---LRGGYRRRSVFGRRPVQ--RQAGGSGGQGGITATNALLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTVAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAITFLIGPR---RLNPYTGQPYIVDESFKLGWPR 420
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: D7FK43_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK43_ECTSI) HSP 1 Score: 379 bits (973), Expect = 3.300e-125 Identity = 204/265 (76.98%), Postives = 221/265 (83.40%), Query Frame = 3
Query: 408 MMALGAAQVIMTASDKRXXXXXXXXXXXXXLRGGYRRRSAYGRRRMRCRQMFGGSGRNKGITATNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAFTGENYIVDKSFELALPR 1202
MMALGAA V+ XXXXXXX LRGGYRRRS +GRR ++ RQ GGSG GITATNVLLALN +VY FQ R+PAITKAGWK+APAITQQGQWYRLLTP+ LHGS THL VNSMSFS+ GPVVE VMGK KF+ VY LAG+AGNVLSCIVNPRTP+VGASGAIFGMVGAW AFC+MNETVLGRN SQ ALRNVAQTVMINVVYGM SSQIDNMGHLGGFLGGA MTFLIGPR KRR N +TG+ YIVD+SF+L PR
Sbjct: 1 MMALGAAHVMXXXXXXXXXXXXXXEST---LRGGYRRRSVFGRRPVQRRQA-GGSGGQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTLAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRFKRRLNPYTGQPYIVDESFKLGWPR 261
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: A0A835Z1Q0_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q0_9STRA) HSP 1 Score: 179 bits (455), Expect = 7.430e-49 Identity = 92/201 (45.77%), Postives = 128/201 (63.68%), Query Frame = 3
Query: 591 TATNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAFTGENYIVDKSFELA 1193
+ TNVLLA+ +Y Q P IT G K+ I +GQWYRL+TP+FLH +L HL++NSMS GP VE GK++ +++Y L+GV+G + SC NPR +VGASGAIFGMVGA A F N LG +G L+++ +TV+IN + G+ SQIDN GH GGF+ G V+T+L GP ++ + ++G + LA
Sbjct: 19 SVTNVLLAITAAIYGAQWLVPGITMQGAKITSKI-MRGQWYRLVTPIFLHANLAHLLMNSMSLYNIGPFVEQWFGKRRMLSIYVLSGVSGVLASCYWNPRASSVGASGAIFGMVGAAACFFASNRNELGAGADRG-LQSILRTVVINTIMGLQISQIDNAGHAGGFVAGFVLTYLFGPNMRWVGSPYSGPRLVDVPRVSLA 217
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: A0A7S2ENP6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENP6_9STRA) HSP 1 Score: 164 bits (415), Expect = 6.630e-41 Identity = 90/204 (44.12%), Postives = 131/204 (64.22%), Query Frame = 3
Query: 597 TNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAF--TGENYIVDKSFELALPR 1202
T L+ NV +Y Q FP+IT+ G K + I + + YRL++PVFLHG + HL +NS S + GP VE G+ +F+ Y AGVAGN+LS ++P P+VGASGAIFG+VGA+A F N+++ G++ +G L ++ QT + N++YG S QIDN GH+GG LGGA + + GP+L Y A G+ ++DK + +PR
Sbjct: 199 TQRLVWTNVAIYGLQVVFPSITRWGAKRSDLILSRRELYRLISPVFLHGGVVHLAMNSFSLNNIGPEVERCFGQGRFLGTYLAAGVAGNLLSAYMSPN-PSVGASGAIFGLVGAYAVFLGRNKSLFGKSGERG-LASLRQTFVTNLIYGFMSPQIDNWGHIGGALGGATIAYHFGPKL---YLAALPNGQRIVLDKP-NIRVPR 396
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: R7Q8K5_CHOCR (Rhomboid domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8K5_CHOCR) HSP 1 Score: 157 bits (398), Expect = 3.100e-39 Identity = 91/183 (49.73%), Postives = 126/183 (68.85%), Query Frame = 3
Query: 588 ITATNVLLALNVVVYAFQTRF-PAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMS-SSQIDNMGHLGGFLGGAVMTFLIGPRL 1130
I ++VLLALNV V+A QT P + G K+ AIT GQ+YRL +P+FLH S++HL+VNS S + GP VE+ GK +F+++Y +GV+GNVLS +P TPAVGASGAIFG+VGA + +LG +G LR++A V++N G++ S++DN GHLGGFLGG ++L+GPRL
Sbjct: 150 IRISHVLLALNVGVFALQTLMGPNVLMRGAKVNSAITA-GQYYRLFSPMFLHASVSHLLVNSFSLHSTGPSVESWFGKPRFLSLYIASGVSGNVLSYFCSP-TPAVGASGAIFGLVGASLVVLGRHRQILGPRARKG-LRSLAYVVIMNFGIGLTPGSRVDNFGHLGGFLGGIAFSYLLGPRL 329
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: E1Z519_CHLVA (Rhomboid domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z519_CHLVA) HSP 1 Score: 153 bits (387), Expect = 5.170e-39 Identity = 87/192 (45.31%), Postives = 122/192 (63.54%), Query Frame = 3
Query: 561 FGGSGRNKGITATNVLLALNVVVYAFQTRFP-AITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLK 1133
FG GR AT+VLL N +++ Q A+T G K+ A+ GQW+RLLTP FLHG+L HL VN S + GP VE G +F+ +Y A VAGNV S + P++ ++GASGA+FG+ GA A + N + G+ S LR + QT+++NVVYG+SS++IDN GH+GG +GGA+ L+GPR +
Sbjct: 31 FGHPGRR----ATDVLLVSNALLFGLQLLTKQALTVWGVKVN-ALVVAGQWWRLLTPAFLHGNLMHLAVNCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVASFLGAPKSVSLGASGAVFGIGGALAMYFYRNRDIYGKT-SDRVLRQLWQTLVLNVVYGLSSTRIDNWGHMGGLVGGALAGLLLGPRFQ 216
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: L1I841_GUITC (Rhomboid domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I841_GUITC) HSP 1 Score: 156 bits (394), Expect = 7.970e-39 Identity = 89/204 (43.63%), Postives = 132/204 (64.71%), Query Frame = 3
Query: 597 TNVLLALNVVVYAFQTRFP-AITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRT-PAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMS-SSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAFTGENYIVDKSFELALP 1199
T+ L +NVVV+ Q A+ +AG K+ I + Q+YRLLTP+FLHGSL+H++VN S + GP VE G ++ + Y LAG+AGNV S P+ P+VGASGAIFG+VGA F ++ + G + S+ L + QT ++N++ G++ S IDN GH+GG +GGAV+ +LIGP LK + + TG+ +VD+ ++LP
Sbjct: 145 TDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILVNCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGALGVFLARHQDIFG-DRSRYMLNGIIQTCILNLIIGLAPGSNIDNWGHIGGAIGGAVVAYLIGPNLKVK-RSLTGQ-VLVDEPL-VSLP 344
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: A0A7S3PU80_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU80_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.300e-37 Identity = 80/178 (44.94%), Postives = 109/178 (61.24%), Query Frame = 3
Query: 597 TNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRL 1130
T+ L+ NV++Y Q P IT+ G K + I Q Q YRL TPVFLHGS+ HLM+NS S GP VE G +F+A Y AG+AGN+ S P P++GASGA+FG++GA+ AF N GR+ Q + V+ T+M+NV++G+ S IDN H+GG + G M GP+L
Sbjct: 116 TSRLIVTNVIMYGLQMMMPGITRMGAKRSDMIMQGQQLYRLFTPVFLHGSILHLMMNSFSLQNIGPEVERNFGSGRFLATYVAAGIAGNMASAYYTPN-PSLGASGAVFGIMGAYYAFLSNNSQFFGRSGEQ-MMGRVSSTLMMNVIFGLVSPSIDNWAHIGGAVAGVGMAMTFGPKL 291
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: A0A6P3ZWT6_ZIZJJ (RHOMBOID-like protein 10, chloroplastic isoform X1 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZWT6_ZIZJJ) HSP 1 Score: 148 bits (374), Expect = 2.120e-36 Identity = 78/195 (40.00%), Postives = 121/195 (62.05%), Query Frame = 3
Query: 597 TNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAFTGENYIVDKS 1181
TN+LLALNVV+Y Q ++ +GQ +RL T FLH ++ HLMVN S ++ GP VE + G ++++ +Y + +A + +S + + PAVGASGAIFG+VG++A F I + ++G + L+++ + + IN+V G+ S IDN GHLGGFLGGA M++L+GP K N+ G + VD++
Sbjct: 115 TNILLALNVVIYVAQIATQGKLLLWGAKINSLVDKGQLWRLATSAFLHANIGHLMVNCYSLNSIGPAVEKISGPRRYLGIYISSAIASSAMSYWLC-KAPAVGASGAIFGLVGSFAVFVIRHRGLVGGGREE--LQHIVRIIAINMVIGLLSRGIDNWGHLGGFLGGAAMSWLLGPSWKYESNSKDGRKFFVDRA 306
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Match: A0A7C8YTV8_OPUST (Rhomboid domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YTV8_OPUST) HSP 1 Score: 149 bits (375), Expect = 2.240e-36 Identity = 81/203 (39.90%), Postives = 122/203 (60.10%), Query Frame = 3
Query: 597 TNVLLALNVVVYAFQTRFPAITKAGWKLAPAITQQGQWYRLLTPVFLHGSLTHLMVNSMSFSTAGPVVENVMGKKKFIAVYALAGVAGNVLSCIVNPRTPAVGASGAIFGMVGAWAAFCIMNETVLGRNYSQGALRNVAQTVMINVVYGMSSSQIDNMGHLGGFLGGAVMTFLIGPRLKRRYNAFTGENYIVDKSFELALPRR 1205
TNVLLA+NV+VY Q ++ +GQ++RL+T FLH ++ HLMVN S ++ GP VEN+ G ++F +Y + V + +S ++ PAVGASGAIFG+VG+ A F + + +V G L ++AQ +++N++ G+ S IDN GHLGG LGGA +++L+GP K +Y G VD++ L RR
Sbjct: 129 TNVLLAVNVLVYVAQIATQGKLMLWGAKINSLIDKGQFWRLVTSSFLHANVGHLMVNCYSLNSIGPTVENICGTRRFFTIYFASAVTSSAMSYWLS-SAPAVGASGAIFGLVGSAAVFSVRHRSVFGSGKED--LEHIAQVILLNMMIGLLSKGIDNWGHLGGLLGGAAISWLVGPAWKYQYTDRNGRRVFVDRAPISYLTRR 328 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig17.155.1 >prot_P-littoralis_Contig17.155.1 ID=prot_P-littoralis_Contig17.155.1|Name=mRNA_P-littoralis_Contig17.155.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=380bp MLHGSKSSSGSKGATAPPTKWAAAARLFALKRGGGGSPGASSSSSSSSSSback to top mRNA from alignment at P-littoralis_Contig17:687302..698150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig17.155.1 ID=mRNA_P-littoralis_Contig17.155.1|Name=mRNA_P-littoralis_Contig17.155.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10849bp|location=Sequence derived from alignment at P-littoralis_Contig17:687302..698150+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig17:687302..698150+ >mRNA_P-littoralis_Contig17.155.1 ID=mRNA_P-littoralis_Contig17.155.1|Name=mRNA_P-littoralis_Contig17.155.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig17:687302..698150+ (Pylaiella littoralis U1_48)back to top |