mRNA_P-littoralis_Contig17.146.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.146.1
Unique NamemRNA_P-littoralis_Contig17.146.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 8.650e-68
Identity = 99/135 (73.33%), Postives = 113/135 (83.70%), Query Frame = 3
Query:    6 KGYQRTGFMFENTGSKQIFERFLGKMATFAEEQPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            +GY RTG+MFE TGSK IF+ FLG+M   AEE+P  VLE+GSWEG SA W+AEHLL+H  SLLVCLDTWDGG E+ENT + M +VEERFHWNM +APNGERV+A KGDSLESLAGL+A GL SSFD VYVDASHE
Sbjct:   29 RGYNRTGYMFEATGSKNIFQTFLGEMMEAAEERPFFVLESGSWEGGSASWVAEHLLKHSESLLVCLDTWDGGQEMENTGFDMVSVEERFHWNMGKAPNGERVVAFKGDSLESLAGLVASGLTSSFDVVYVDASHE 163          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.120e-51
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 3
Query:   18 RTGFMFENTGSKQIFERFLGKMATFAEEQPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            RTG +  N   K +F+RF G MA  AEEQP  VLETGSW+G SA WIAEH+L+HP S+LVCLDTW+G P  EN+ Y MAA+E+RF  NMA+ PNG+RV+A KG SLESLA +LA GL S FDAV++D SHE
Sbjct:   58 RTGLVL-NPSLKSVFQRFFGGMAGLAEEQPFHVLETGSWQGESASWIAEHILKHPESILVCLDTWNGSPPPENSGYEMAAIEDRFRSNMARVPNGDRVVAFKGTSLESLANILASGLDSRFDAVFLDGSHE 187          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.360e-44
Identity = 73/110 (66.36%), Postives = 86/110 (78.18%), Query Frame = 3
Query:   81 MATFAEEQPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            MA  AEEQP  VLETGSW+G SA WIAEH+L+HP S+LVCLD W+G P  EN+ Y MAA+E+RF  NMA+ PNG+RV+A KG SLESLA +LA GL S FDAV +D SHE
Sbjct:    1 MAGLAEEQPFHVLETGSWQGESASWIAEHVLKHPESILVCLDKWNGSPPPENSGYDMAAIEDRFRSNMARIPNGDRVVAFKGSSLESLANILASGLDSRFDAVLLDGSHE 110          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: A0A7S4KFR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFR5_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-17
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  105 PVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEE------RFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLIS-------SFDAVYVDASH 407
            PV +LE G++EG++ +W+AEHLLRH  S L+C+D W     L     P+A   E      RF  N+A+ PNG RV   +G +L +L G++A            +FD +YVDA H
Sbjct:    9 PVRILELGAFEGSTTMWLAEHLLRHKDSWLLCVDLWSTA-SLAAVGQPIAGTPELANTLGRFSANVARTPNGGRVRTFRGSTLAALGGMIAAAADGDQAAEGDAFDLIYVDAGH 121          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: A0A3L7QJ61_9BACT (Class I SAM-dependent methyltransferase n=2 Tax=Bacteria TaxID=2 RepID=A0A3L7QJ61_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 2.570e-16
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  102 QPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            +PV  LE GS EG SA+WIA+HLL HPS+ L+C+D W           P A  E RF  N+A+     +V  +K DS     GLL++G    FD +Y+D SHE
Sbjct:   25 RPVRCLEIGSHEGRSAVWIAQHLLSHPSATLICIDPW-----------PDAEAEHRFDANIAETGRAPQVRKLKTDSWR---GLLSQG--PGFDLIYIDGSHE 111          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: A0A6L7F2M8_9ACTN (Class I SAM-dependent methyltransferase n=2 Tax=Nocardioides flavescens TaxID=2691959 RepID=A0A6L7F2M8_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 2.150e-12
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 3
Query:   99 EQPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAA----VEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            ++P+ VLE GSWEG SAL+   +    P++ L C+DT+ GG E  + D P A     VE+RF  N A+  +  RV+A   D+  +LA L A G  + FD V VD SHE
Sbjct:   38 DEPLDVLEIGSWEGRSALFFLHYF---PAARLTCVDTFTGGAEHVDGDSPWAGELPHVEQRFRTNTAEFADRVRVLAEPSDA--ALARLAAEG--AHFDLVLVDGSHE 138          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: UPI00155923CB (class I SAM-dependent methyltransferase n=1 Tax=Herbaspirillum rubrisubalbicans TaxID=80842 RepID=UPI00155923CB)

HSP 1 Score: 69.3 bits (168), Expect = 9.480e-12
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  102 QPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNM----AQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            QP  VLE GS+EG S +++ E         +VC+DTW+G  E +     M  VE+RF  N+    A A +   +  +KG S ES   L+  G   +FD +YVD SH+
Sbjct:   33 QPQKVLEIGSYEGRSTVFMMELFSERNPLEIVCIDTWEGATEHQEDGIDMLEVEKRFDQNVQAAIANAVHPINLRKVKGRSFESCCKLICDGEEGTFDWIYVDGSHK 139          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: UPI001B826D53 (class I SAM-dependent methyltransferase n=1 Tax=Phenylobacterium sp. 20VBR1 TaxID=2803784 RepID=UPI001B826D53)

HSP 1 Score: 68.2 bits (165), Expect = 2.860e-11
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   69 FLGKMATFAE----EQPVAVLETGSWEGASALWIAEH--LLRHPSSLLVCLDTWDGGPELEN---TDYPMAAVEERFHWNM----AQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASHE 410
            F G + T+ +     +P  +LE GS+EG S +W+ EH  +       + C+DTWDGG E +     +  M  VE RF+ N+     + P+   +  +K  S  +LA L+A G    FD VYVD SH+
Sbjct:   20 FSGNVPTWRQIIDKNKPRRILEIGSFEGRSTVWMIEHCTVAAQGDVEITCIDTWDGGIEHQKGGQIETSMPDVERRFNANIEIAQGKTPHKAEITRMKMYSNLALAKLIAEGKTEYFDLVYVDGSHQ 146          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: A0A8G1ASA8_9MYCO (Class I SAM-dependent methyltransferase n=1 Tax=Mycobacterium holsaticum TaxID=152142 RepID=A0A8G1ASA8_9MYCO)

HSP 1 Score: 66.6 bits (161), Expect = 2.300e-10
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 3
Query:   87 TFAEEQPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPE-LENTDYPMAAVEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASH 407
            TF  + PV VLE GSWEG S L++  +        L  +DTW GG E  +N    ++ +E+RF  N+A  P   R+   KG SL+ L  LL    +  FD +YVD SH
Sbjct:   95 TFDRKDPVHVLEIGSWEGRSTLFLLTYFTH---GHLTAVDTWAGGDEHQDNAARDLSDLEDRFDANLA--PCASRLTKRKGSSLQVLPQLLDEEQV--FDVIYVDGSH 195          
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Match: A0A7I7NW67_9MYCO (Uncharacterized protein n=2 Tax=Mycobacterium seoulense TaxID=386911 RepID=A0A7I7NW67_9MYCO)

HSP 1 Score: 65.5 bits (158), Expect = 4.080e-10
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 3
Query:   90 FAEEQPVAVLETGSWEGASALWIAEHLLRHPSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNMAQAPNGERVIAIKGDSLESLAGLLARGLISSFDAVYVDASH 407
            FA   P+ VLE GSWEG S L++A +    P + L  +DTW+G  E  +    +  +E RF  N++      RV   KG S   L  LLA G    +D +YVD SH
Sbjct:   75 FARTDPLDVLEVGSWEGRSTLFLATYF---PHARLTAVDTWEGSHESISATTDVQGLEARFDHNLSAC--AARVTKRKGMSSTVLPQLLAEG--RRYDLIYVDGSH 173          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK47_ECTSI8.650e-6873.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK29_ECTSI3.120e-5163.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQS8_9PHAE1.360e-4466.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4KFR5_9EUKA2.400e-1739.47Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A3L7QJ61_9BACT2.570e-1643.69Class I SAM-dependent methyltransferase n=2 Tax=Ba... [more]
A0A6L7F2M8_9ACTN2.150e-1242.59Class I SAM-dependent methyltransferase n=2 Tax=No... [more]
UPI00155923CB9.480e-1237.38class I SAM-dependent methyltransferase n=1 Tax=He... [more]
UPI001B826D532.860e-1134.65class I SAM-dependent methyltransferase n=1 Tax=Ph... [more]
A0A8G1ASA8_9MYCO2.300e-1039.81Class I SAM-dependent methyltransferase n=1 Tax=My... [more]
A0A7I7NW67_9MYCO4.080e-1038.68Uncharacterized protein n=2 Tax=Mycobacterium seou... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:648528..649722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FK47
PFAMsGlyco_transf_8,Methyltransf_24
Model size410
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.45e-63
EggNOG OGs2DZ7R@1|root,2S6WK@2759|Eukaryota
DescriptionMethyltransferase domain
Cds size381
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789819.4892914-UTR-P-littoralis_Contig17:648527..6485561680789819.4892914-UTR-P-littoralis_Contig17:648527..648556Pylaiella littoralis U1_48UTRP-littoralis_Contig17 648528..648556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789819.5024576-CDS-P-littoralis_Contig17:648556..6486491680789819.5024576-CDS-P-littoralis_Contig17:648556..648649Pylaiella littoralis U1_48CDSP-littoralis_Contig17 648557..648649 +
1680789819.5126355-CDS-P-littoralis_Contig17:649098..6492391680789819.5126355-CDS-P-littoralis_Contig17:649098..649239Pylaiella littoralis U1_48CDSP-littoralis_Contig17 649099..649239 +
1680789819.5244505-CDS-P-littoralis_Contig17:649575..6497221680789819.5244505-CDS-P-littoralis_Contig17:649575..649722Pylaiella littoralis U1_48CDSP-littoralis_Contig17 649576..649722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.146.1prot_P-littoralis_Contig17.146.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 648557..649722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.146.1

>prot_P-littoralis_Contig17.146.1 ID=prot_P-littoralis_Contig17.146.1|Name=mRNA_P-littoralis_Contig17.146.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MFENTGSKQIFERFLGKMATFAEEQPVAVLETGSWEGASALWIAEHLLRH
PSSLLVCLDTWDGGPELENTDYPMAAVEERFHWNMAQAPNGERVIAIKGD
SLESLAGLLARGLISSFDAVYVDASHE
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mRNA from alignment at P-littoralis_Contig17:648528..649722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.146.1 ID=mRNA_P-littoralis_Contig17.146.1|Name=mRNA_P-littoralis_Contig17.146.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1195bp|location=Sequence derived from alignment at P-littoralis_Contig17:648528..649722+ (Pylaiella littoralis U1_48)
AGCGTAAGGGGTACCAGCGCACTGGATTTATGTTTGAAAATACGGGCAGC AAACAAATATTTGAGCGGTTCCTGGGAAAGATGGCGACTTTTGCGGAAGA ACAACCGGTTGCTGTGCTAGAGGTAAAACCGCCCGCCGTTGAGCACACGC AAGTAAACACCAATATGCACTATGCAGTGTCATTCTTGTATCACTCGCGC TAGCCGCGCTTCGATCACTTGTCTGTGTACCCCCCGTAGCCGTGTAGCAG AGAAAAATACTCAGCTATGTATATCAATATACAGTATAACATATGCGTCG CACGAGCGGCGTCACTACTACAGTGCGGATGGTGGCGGCTCGAGGTGGCG ACTCGAGGTGGCGGCCCGAGAAACGTCCATTGTGGCCAAACGTCTAACGC CGTACCAAGTCTGCAAGACATGAGTTGGCAGACTGTCATAGCAGCGACTT TTGGTGGTGTAATGCTGCGAATGGCACGCCCCAACGTGTCGAGATGCTTG CGTGTGAACATGTGCGGTGCCTGAATTTTTTCCGCCTTTGCCTTCGCTTT CATTCACACCGTGGTGCTCAGACGGGAAGCTGGGAGGGAGCCTCAGCATT GTGGATCGCGGAACATCTCTTGAGGCATCCGTCATCTCTCCTCGTCTGCC TCGATACGTGGGACGGCGGCCCGGAACTAGAGAACACCGATTACCCTATG GCTGCTGTAGAGGCAAGAACGGCCCGTGGACGCACTTCTGTTGGTGTCAC AGCGTGTGATAACGGGAAACTGTGCAACAACTGATTTGAGAGACTAGCAC GTTCCGCCATAGTCGTCTTCGTCTGAAAGAAAACACAGGAAATCTGAGGT ACCAGCACACCCCTCGGAACAATAGTGAGCCATGCGGTCAGGTAGTCGAA GGGTCCTTTTACTGCAAATGCCCTTATCATTCCTGGGTGAACGGTTCTGG CTCCGATTTCCGCCCAGCGTTTACAAGCTCCCGCACCGCACCCCTCGCGC CGTTTCGCACCCTCGATATCTTCAAACCCGTCTGACACACTCCAACAGGA GCGCTTTCACTGGAATATGGCTCAGGCCCCGAACGGCGAGCGTGTGATCG CTATCAAGGGCGACTCTCTTGAGTCATTGGCAGGTCTTCTGGCCAGGGGG CTGATCTCGTCTTTCGATGCTGTTTACGTCGATGCTTCACATGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:648528..649722+

>mRNA_P-littoralis_Contig17.146.1 ID=mRNA_P-littoralis_Contig17.146.1|Name=mRNA_P-littoralis_Contig17.146.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig17:648528..649722+ (Pylaiella littoralis U1_48)
ATGTTTGAAAATACGGGCAGCAAACAAATATTTGAGCGGTTCCTGGGAAA
GATGGCGACTTTTGCGGAAGAACAACCGGTTGCTGTGCTAGAGACGGGAA
GCTGGGAGGGAGCCTCAGCATTGTGGATCGCGGAACATCTCTTGAGGCAT
CCGTCATCTCTCCTCGTCTGCCTCGATACGTGGGACGGCGGCCCGGAACT
AGAGAACACCGATTACCCTATGGCTGCTGTAGAGGAGCGCTTTCACTGGA
ATATGGCTCAGGCCCCGAACGGCGAGCGTGTGATCGCTATCAAGGGCGAC
TCTCTTGAGTCATTGGCAGGTCTTCTGGCCAGGGGGCTGATCTCGTCTTT
CGATGCTGTTTACGTCGATGCTTCACATGAG
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