mRNA_P-littoralis_Contig17.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.145.1
Unique NamemRNA_P-littoralis_Contig17.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:645341..648594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FK28
PFAMsFringe
Model size554
Max annot lvl2759|Eukaryota
KEGG koko:K00731
KEGG ReactionR05908
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.1e-10
EggNOG OGsKOG2246@1|root,KOG2246@2759|Eukaryota
EC2.4.1.122
Descriptionglycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
Cds size552
COG categoryS
CAZyGT31
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789819.4144664-CDS-P-littoralis_Contig17:645340..6457301680789819.4144664-CDS-P-littoralis_Contig17:645340..645730Pylaiella littoralis U1_48CDSP-littoralis_Contig17 645341..645730 +
1680789819.4290855-CDS-P-littoralis_Contig17:647899..6479981680789819.4290855-CDS-P-littoralis_Contig17:647899..647998Pylaiella littoralis U1_48CDSP-littoralis_Contig17 647900..647998 +
1680789819.4469097-CDS-P-littoralis_Contig17:648529..6485921680789819.4469097-CDS-P-littoralis_Contig17:648529..648592Pylaiella littoralis U1_48CDSP-littoralis_Contig17 648530..648592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.145.1prot_P-littoralis_Contig17.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 645341..648592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.145.1

>prot_P-littoralis_Contig17.145.1 ID=prot_P-littoralis_Contig17.145.1|Name=mRNA_P-littoralis_Contig17.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
KKGSIAGANQSTSVYSVKTEDNHGTDSSAASIERNPTSGATSMPPMFPSP
SLSAASQVLIWTILVYTSYGGNVNPTALSSHVVPPPPPLEALAAGGAAVD
PAGWTSLAMILNDGAIQKTVMIRNGADEAEVSAVITAGCREAGVTDDQAS
NIIHQWRNKQMSERKGYQRTGFMFENTGSKQIFE
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mRNA from alignment at P-littoralis_Contig17:645341..648594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.145.1 ID=mRNA_P-littoralis_Contig17.145.1|Name=mRNA_P-littoralis_Contig17.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3254bp|location=Sequence derived from alignment at P-littoralis_Contig17:645341..648594+ (Pylaiella littoralis U1_48)
AAAAAAGGTTCCATCGCGGGCGCAAACCAGAGCACCTCAGTTTACTCTGT
CAAGACAGAGGACAACCACGGAACAGATAGCTCTGCTGCATCAATCGAAA
GGAATCCCACATCGGGAGCTACGTCGATGCCACCGATGTTTCCTTCCCCA
TCTCTGTCCGCCGCTTCGCAAGTGCTCATCTGGACCATCCTGGTGTATAC
CTCCTATGGCGGAAATGTCAACCCTACAGCACTAAGTAGCCATGTGGTGC
CTCCGCCCCCTCCACTAGAAGCTCTGGCAGCAGGAGGAGCGGCAGTTGAT
CCGGCGGGGTGGACTTCGCTTGCAATGATTCTGAACGATGGGGCCATACA
GAAGACTGTTATGATCAGGAACGGTGCCGACGAAGCAGAGGTACTGCTAT
GCATCACGGTGACTCCGCACCGCAGTAATGTTATTGTATCTCACAATTTT
CACCATTAAAACTTTGCAGCAATGAACGTCGGTCGCCCCGGTGGTCTAGT
GAATCCCTCGTTAACCCTTCTGGGACCAGGGTATTTCGGCAGGGTGACCC
AAATAGCCCGGGAGTCGTTCCACGATAGCCCCCCCTCGATTTCTTTAACG
AAAATAGCTGGTTTTGAAACCAGCTCCTAGCCCGACAATCGGAAGTCTGA
CGTCTCTAACGATGGCGACTTCATTTTTTGATAGCCCTTGGTGTACATTT
CAGATGCATTTTTGTTTTTTTCATAGCCCAATTCCTTGTCTCTCCAAGCC
ATGAAATGTTCGTTGAATAATTTTTCTAAGAGGCGAACACAATGATGTCT
TGGTAAGAAAATAGAAAATTAAAAAATGATATCGCTGGTTTCGGGGGGTG
CTATCGCGAAACGACTCCCGGGTTCTAAAAAACTGAACCACTGATTCCAC
CGCCCGAGAACCAGACACACCCCCAGCCCCCAGCTCTTGGCTCCGCGTGC
ACAAATCATGAGAAAATTGACATGTGAGCACCTCAAAGTTATTCAGCCAG
GGTCACTAACAAGGTCTCGCAACAGGCTGGTAGCGTCCCTGGAGAGACTA
GGAGAGTTAACCGATGGTCGCGATGCCGCCTCCTGCTCTCAAATATTGCG
AAATGATGACTGGTCATCACAGGCCTTCCTCTCCAGATACCCAAATGAAA
TCAAGTCAATTCAGGAATAGCGCATTTTTGTCCACGGTAGCCCACAACCA
TAATTTTGTCAATCTGAGGCACAGCAGGATGCTTGTAGCAGGCCCTACGG
TGGTTGGAAGACTGCTGTGTGTTGCTCCGGTTGGATAGTGCTGGTGCGAT
GGTTTCTTTTATAATCAATGGTGTACAACTCCATCGTGTTCTTTGGTTCG
GGATTTATTTGCTGTTTTCGTCCCCATCCCGGACTCCATCCCCATGTCCC
GACGAGACCACCCCAAGAAAAATAAATAAACAAAACGAACAATTTTCAGA
GAACAAAAAAGCACTACTGTGAAGACCTACTAGTTGTAAGGTCGTAGGTT
CGATTCTCTTTGAGAGCATTTCTTGCGACTATACAGTGGAAAGCGAAGTA
CTCGTGAGTAAACACAGGGAAGGGATTGCTGTACCCGACTCGCATCGAAA
TTAAACCAAAGGCACGTACCGCAGGAGGAAGGTTTGGGCAAGAAAAACAA
AATAAAACATATGAAAGCTCGTGTGTGACCTTCCTTCTGTGTGACCCCGG
CTGATGCACCCACTTCATACCGACAGGTGTAGACTGGTGCCCAGAATAAA
TGGGATGACAACACACACAGTAATGTCCGTATCTGTACGTGCGTGGTCAA
CACTGCTGTATTCATTTATGCATGTTAACGGCTGTATCTCTTCTGCCATT
CAGTGGCGTCTAGCTTTCGGTTTAACTACAAAGCTACGCCATCTAGGTAC
TACTGTGCCGAAACCCCCTTCACCCGTACAGGGACGGGGTGTGATACCGG
TGGGAAGTTGACCAGGAGATCGGGCATCAGTCGTATTATATTGCAAGAAC
AACCATCTCTGGCTATCGTGAGTCAAGTTTTGTGGGGATCAGTGGGGAGA
CGCGGGGGGCCTACTGCACTCATAGGCAAGGCTATGATCCCTGCGCGATT
TTCAGTAGACGGCACCAGGCAGGCGGTACAGCAGCGCACCCAAAGGGCAG
ACAAACTAGTTTGGATGCCATAAATCTGAACTGAAGGTTATATAAAACTC
TAGACCGACATCTACTGTAAGTGGATGGCTAAAAGTCGTAGATAGATATC
TCCTGTATTTCCACCACTCTAGACGAATCTACCGAAGTATTTCCACCACT
CTTACACTTTACCGAGCGAGCATGCCGACGAACTCACGAAAGAATAGCAA
GCGAATGCGTCGATGAATACATAACGTATTCCACACGCCAACCCCTTGCT
CCCTCCATGATATCAAGAACAGCTGGAGCATTTAATTTAAACACAGTATC
AAAATGTACGGTACCACCGAACGAATGGCGACGCTTTCTACTATTGTTGT
CCTTTGATGTAATGTGGATGCCGGGACGGGCGGCAACTTGTTTTTTTGCC
CTTACGCAGGTGAGTGCGGTGATAACCGCGGGCTGTCGAGAGGCCGGTGT
GACCGATGACCAGGCCTCCAACATCATCCACCAATGGAGGAACAAGCAGA
TGAGCGAGGTGACAAAAGGCAAATAAAAATGGATTTCAATTTGGCCAAGG
CTACTTCAGTAAGAGCAGTGTTCATTTGTACAGCGTACTGATGTACCATG
GTGTGACGTTTCGGGTAAGAGCCCCTATGTCATAAACCCTGGGGTACCTA
GATCAGGTCCAAACAGTCCACTCCCTGTTCTGCTTCTCAATCTGAACTTC
GCGATACTCGGAAGGGTGCTAATCAGCAAGTGATAGATTTCTCGATGAAA
TATTTTTAGGTAGGCGATTCCCTTGATGTCTACTGCAGAGCCTCCTCATC
GTGAAACACATCAGGAAACATTTTGGAAGGTGCGAGCCGAAGGTGTCCCC
CGGTAGTCCTGGTATTGCCTATGATTTGATGAGTATCTCTGTTTGTTCTC
CGAAGCCCAAATCAATATCCGGCAGGTTCATCTACCATAATTCACAACAG
CCCTCAACTGCTGTTCGTTGTGCGCTTATTCCAACCTGCAACGTGCTGCT
TTTGCTACGTGCGCGTGCGCTGTGCTGCTCGAATTTCAGCGTAAGGGGTA
CCAGCGCACTGGATTTATGTTTGAAAATACGGGCAGCAAACAAATATTTG
AGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:645341..648594+

>mRNA_P-littoralis_Contig17.145.1 ID=mRNA_P-littoralis_Contig17.145.1|Name=mRNA_P-littoralis_Contig17.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig17:645341..648594+ (Pylaiella littoralis U1_48)
AAAAAAGGTTCCATCGCGGGCGCAAACCAGAGCACCTCAGTTTACTCTGT
CAAGACAGAGGACAACCACGGAACAGATAGCTCTGCTGCATCAATCGAAA
GGAATCCCACATCGGGAGCTACGTCGATGCCACCGATGTTTCCTTCCCCA
TCTCTGTCCGCCGCTTCGCAAGTGCTCATCTGGACCATCCTGGTGTATAC
CTCCTATGGCGGAAATGTCAACCCTACAGCACTAAGTAGCCATGTGGTGC
CTCCGCCCCCTCCACTAGAAGCTCTGGCAGCAGGAGGAGCGGCAGTTGAT
CCGGCGGGGTGGACTTCGCTTGCAATGATTCTGAACGATGGGGCCATACA
GAAGACTGTTATGATCAGGAACGGTGCCGACGAAGCAGAGGTGAGTGCGG
TGATAACCGCGGGCTGTCGAGAGGCCGGTGTGACCGATGACCAGGCCTCC
AACATCATCCACCAATGGAGGAACAAGCAGATGAGCGAGCGTAAGGGGTA
CCAGCGCACTGGATTTATGTTTGAAAATACGGGCAGCAAACAAATATTTG
AG
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