mRNA_P-littoralis_Contig17.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.33.1
Unique NamemRNA_P-littoralis_Contig17.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig17.33.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 5.240e-51
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 LYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAVNNLLDGLYSKTKGSAESPVQEDDLVESTPAADGG 249
            LYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDA+NNLLDGLYSKTKGSAESPVQEDDLVESTPAADGG
Sbjct:  113 LYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADGG 195
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BLAST of mRNA_P-littoralis_Contig17.33.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.660e-17
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 LYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAVNNLLDGLYS--KTKGSAESPVQ 207
            L+T+GKKLW +FD  M  +KKF NP+WD +V+GQPG  LPSG   +DA+  LL+G+Y      G+ E+P++
Sbjct:  119 LFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPGDQLPSGSQDEDAIEYLLNGVYHTISNTGNEENPIE 189
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BLAST of mRNA_P-littoralis_Contig17.33.1 vs. uniprot
Match: A0A6H5KAW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW9_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.850e-7
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   67 CNPIWDRYVKGQPGGNLPSGQTGDDAVNNLLDGLYSKTKGSAESPVQEDDLVESTPAADGG 249
            C  I     KGQPG NLPSG+  +DA++ LL+G+Y ++ G+AE P++ +D  +    ADGG
Sbjct:    3 CRRIGPHVSKGQPGDNLPSGEQVEDALDYLLNGVYHRSSGNAEDPIELEDGDDDV--ADGG 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE5.240e-5198.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI6_ECTSI2.660e-1749.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW9_9PHAE3.850e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:125481..125948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.605681-CDS-P-littoralis_Contig17:125480..1256431680789814.605681-CDS-P-littoralis_Contig17:125480..125643Pylaiella littoralis U1_48CDSP-littoralis_Contig17 125481..125643 -
1680789814.6148975-CDS-P-littoralis_Contig17:125862..1259481680789814.6148975-CDS-P-littoralis_Contig17:125862..125948Pylaiella littoralis U1_48CDSP-littoralis_Contig17 125863..125948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.33.1prot_P-littoralis_Contig17.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 125481..125948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.33.1

>prot_P-littoralis_Contig17.33.1 ID=prot_P-littoralis_Contig17.33.1|Name=mRNA_P-littoralis_Contig17.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
LYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAVN
NLLDGLYSKTKGSAESPVQEDDLVESTPAADGG
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mRNA from alignment at P-littoralis_Contig17:125481..125948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.33.1 ID=mRNA_P-littoralis_Contig17.33.1|Name=mRNA_P-littoralis_Contig17.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig17:125481..125948- (Pylaiella littoralis U1_48)
CTCTACACAAACGGGAAGAAGCTCTGGACCAAGTTCGACGCCGCGATGCT
TAAAATGAAGAAGTTTTGCAACCCTATCTGGGATAGGTAGGTCGTCTTTT
TTTGCTTGCAACATATTGATTGAATCCATCCTCCGCCCCCTTGAGCACGT
ACATATTCCTCGAATGTGTACTCCGGCTAGACCGAGTACAACGTTACCGC
TTGAGCACATACAGTTGCGACACCAGGTGGCAAGATAAAAAAAATCAGTA
TGCATTTCGATAGTTATCTTACTGCTGCACATTATGTTTGGGTCATCTCC
ACCAGATACGTCAAGGGCCAGCCGGGGGGCAACCTGCCGTCGGGCCAAAC
TGGAGACGACGCCGTCAATAACCTTCTCGACGGCCTCTACTCGAAAACCA
AAGGCTCCGCGGAAAGCCCTGTGCAGGAGGACGATCTCGTGGAGTCCACT
CCTGCAGCCGACGGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:125481..125948-

>mRNA_P-littoralis_Contig17.33.1 ID=mRNA_P-littoralis_Contig17.33.1|Name=mRNA_P-littoralis_Contig17.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig17:125481..125948- (Pylaiella littoralis U1_48)
CTCTACACAAACGGGAAGAAGCTCTGGACCAAGTTCGACGCCGCGATGCT
TAAAATGAAGAAGTTTTGCAACCCTATCTGGGATAGATACGTCAAGGGCC
AGCCGGGGGGCAACCTGCCGTCGGGCCAAACTGGAGACGACGCCGTCAAT
AACCTTCTCGACGGCCTCTACTCGAAAACCAAAGGCTCCGCGGAAAGCCC
TGTGCAGGAGGACGATCTCGTGGAGTCCACTCCTGCAGCCGACGGAGGG
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