mRNA_P-littoralis_Contig17.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.28.1
Unique NamemRNA_P-littoralis_Contig17.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig17.28.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.380e-34
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:  109 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVP 384
            MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAE     XXXXXXXXXX   KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVP
Sbjct:    1 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVP 92
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BLAST of mRNA_P-littoralis_Contig17.28.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-11
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:  142 LHPEVALAAALAALDDIQQDDMLSD--AEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVP 384
            L P  ALA AL A+D++Q++D+      E +P            +R++ D  TCAWAQ+LED+DL+D TSI AK+FR DFRVP
Sbjct:   55 LLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVP 137
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BLAST of mRNA_P-littoralis_Contig17.28.1 vs. uniprot
Match: A0A6H5JSI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.610e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  187 DIQQDDMLSDAEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVP 384
            D+ Q D+L   E +P            +R+K D  TCAWAQ+LED+DL+D TSI AK+FR DFRVP
Sbjct:   13 DLSQQDLL---EEDPANDLPRERLTRSQRQKKDVETCAWAQLLEDKDLEDSTSITAKQFRGDFRVP 75
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BLAST of mRNA_P-littoralis_Contig17.28.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.190e-8
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  268 KRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVP 384
            +R++ D  TCAWAQ+LED+DL+D TSI AK+FR DFRVP
Sbjct:   85 QRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVP 123
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BLAST of mRNA_P-littoralis_Contig17.28.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.810e-8
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:  142 LHPEVALAAALAALDDIQQDDMLSD--AEAEPDEXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRV 381
            L P  ALA AL A+D+ Q++D+      E +P            + ++ D  TCAWAQ+LED+DL+D TSI AK+F  +FRV
Sbjct:    9 LLPATALAVALVAIDEAQRNDLSQQYFLEEDPANDLPRERLTRSQTQRKDVETCAWAQLLEDKDLEDSTSITAKQFLVEFRV 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.380e-3491.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE2.300e-1146.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI1_9PHAE2.610e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLY4_9PHAE1.190e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS2_9PHAE3.810e-842.68DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:121012..121395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size386
Hectar predicted targeting categorysignal peptide
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.3902996-UTR-P-littoralis_Contig17:121011..1210171680789814.3902996-UTR-P-littoralis_Contig17:121011..121017Pylaiella littoralis U1_48UTRP-littoralis_Contig17 121012..121017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789814.4000094-CDS-P-littoralis_Contig17:121017..1213951680789814.4000094-CDS-P-littoralis_Contig17:121017..121395Pylaiella littoralis U1_48CDSP-littoralis_Contig17 121018..121395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.28.1prot_P-littoralis_Contig17.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 121018..121395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.28.1

>prot_P-littoralis_Contig17.28.1 ID=prot_P-littoralis_Contig17.28.1|Name=mRNA_P-littoralis_Contig17.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MPARLPSLLLLLLLVVGGQRVASSSSPASSVHPIMSAAAEGRVKDLHPEV
ALAAALAALDDIQQDDMLSDAEAEPDEEPRREKRGRRKRRKNDTSTCAWA
QVLEDEDLKDPTSIAAKKFREDFRVP
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mRNA from alignment at P-littoralis_Contig17:121012..121395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.28.1 ID=mRNA_P-littoralis_Contig17.28.1|Name=mRNA_P-littoralis_Contig17.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig17:121012..121395+ (Pylaiella littoralis U1_48)
AGCGCTATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACTGCTACTTGT
GGTGGGTGGTCAGCGTGTTGCTTCATCGTCGTCTCCCGCCAGCAGCGTTC
ATCCCATCATGTCCGCAGCAGCAGAGGGCAGAGTCAAAGACCTCCATCCA
GAAGTCGCGCTTGCGGCAGCGCTGGCTGCTCTGGATGACATCCAACAGGA
TGACATGCTGTCAGATGCCGAGGCCGAACCTGACGAGGAACCCCGGCGCG
AGAAGCGCGGTCGAAGGAAGAGAAGGAAGAACGACACCAGCACGTGTGCT
TGGGCGCAGGTGCTGGAGGATGAAGACCTAAAGGATCCTACAAGCATAGC
GGCGAAGAAGTTTCGAGAGGACTTTCGCGTCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:121012..121395+

>mRNA_P-littoralis_Contig17.28.1 ID=mRNA_P-littoralis_Contig17.28.1|Name=mRNA_P-littoralis_Contig17.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig17:121012..121395+ (Pylaiella littoralis U1_48)
ATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACTGCTACTTGTGGTGGG
TGGTCAGCGTGTTGCTTCATCGTCGTCTCCCGCCAGCAGCGTTCATCCCA
TCATGTCCGCAGCAGCAGAGGGCAGAGTCAAAGACCTCCATCCAGAAGTC
GCGCTTGCGGCAGCGCTGGCTGCTCTGGATGACATCCAACAGGATGACAT
GCTGTCAGATGCCGAGGCCGAACCTGACGAGGAACCCCGGCGCGAGAAGC
GCGGTCGAAGGAAGAGAAGGAAGAACGACACCAGCACGTGTGCTTGGGCG
CAGGTGCTGGAGGATGAAGACCTAAAGGATCCTACAAGCATAGCGGCGAA
GAAGTTTCGAGAGGACTTTCGCGTCCCC
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