mRNA_P-littoralis_Contig17.176.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.176.1
Unique NamemRNA_P-littoralis_Contig17.176.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:748288..748687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size400
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.495083-UTR-P-littoralis_Contig17:748287..7483231680789813.495083-UTR-P-littoralis_Contig17:748287..748323Pylaiella littoralis U1_48UTRP-littoralis_Contig17 748288..748323 -
1680789813.5233057-UTR-P-littoralis_Contig17:748635..7486871680789813.5233057-UTR-P-littoralis_Contig17:748635..748687Pylaiella littoralis U1_48UTRP-littoralis_Contig17 748636..748687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.5087664-CDS-P-littoralis_Contig17:748323..7486351680789813.5087664-CDS-P-littoralis_Contig17:748323..748635Pylaiella littoralis U1_48CDSP-littoralis_Contig17 748324..748635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.176.1prot_P-littoralis_Contig17.176.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 748324..748635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.176.1

>prot_P-littoralis_Contig17.176.1 ID=prot_P-littoralis_Contig17.176.1|Name=mRNA_P-littoralis_Contig17.176.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MGRVAFYTQVALAITPWYEQIMFFSQGRWGWALCLSSFLCKCAPPKRHGG
SLPTSILATVVSTSSCLLRRLRPSRSTALVAVGGGAPRSRVVHMFVYFGS
QKS*
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mRNA from alignment at P-littoralis_Contig17:748288..748687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.176.1 ID=mRNA_P-littoralis_Contig17.176.1|Name=mRNA_P-littoralis_Contig17.176.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=400bp|location=Sequence derived from alignment at P-littoralis_Contig17:748288..748687- (Pylaiella littoralis U1_48)
TCGACCTCATATTTTTGTTCCAGGTACAAACTGCAGATTTCCTACGGCTT
ACATGGGTCGTGTTGCTTTTTACACTCAAGTTGCGCTTGCTATTACACCA
TGGTATGAGCAAATCATGTTTTTTTCGCAAGGAAGATGGGGATGGGCACT
CTGTCTCTCATCGTTTCTCTGTAAATGCGCACCCCCAAAACGACATGGCG
GTTCACTTCCAACTAGCATCCTCGCAACCGTTGTGTCCACCTCCAGCTGC
TTGCTACGTCGACTCAGACCCTCAAGATCAACCGCCCTAGTCGCTGTTGG
AGGGGGGGCTCCGAGGTCGAGGGTGGTACACATGTTCGTTTATTTCGGCT
CGCAGAAAAGCTAACCGAGAGAGATATATACAGAGAGACAGAGGGACCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:748288..748687-

>mRNA_P-littoralis_Contig17.176.1 ID=mRNA_P-littoralis_Contig17.176.1|Name=mRNA_P-littoralis_Contig17.176.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig17:748288..748687- (Pylaiella littoralis U1_48)
ATGGGTCGTGTTGCTTTTTACACTCAAGTTGCGCTTGCTATTACACCATG
GTATGAGCAAATCATGTTTTTTTCGCAAGGAAGATGGGGATGGGCACTCT
GTCTCTCATCGTTTCTCTGTAAATGCGCACCCCCAAAACGACATGGCGGT
TCACTTCCAACTAGCATCCTCGCAACCGTTGTGTCCACCTCCAGCTGCTT
GCTACGTCGACTCAGACCCTCAAGATCAACCGCCCTAGTCGCTGTTGGAG
GGGGGGCTCCGAGGTCGAGGGTGGTACACATGTTCGTTTATTTCGGCTCG
CAGAAAAGCTAA
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