mRNA_P-littoralis_Contig1025.13.9 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1025.13.9
Unique NamemRNA_P-littoralis_Contig1025.13.9
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 4.030e-66
Identity = 137/335 (40.90%), Postives = 203/335 (60.60%), Query Frame = 1
Query:  460 HTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTGDKDSSLTPDEADKL-VAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVADACNDTASIFAPRTIFDSVFYYAALIK--TIAEDPNRRSTKAVTAREMREPYKQAGISPPSESTCNHWRKVVDVMTPAGLKALKEVSESADPSVDLSILTLEFLKMEEFMKSKEWPDEQALVLQILARWNRFNANTPFSRKHHVPPIFMQAKRAASWMRDIDKSIISREEWPQQLLEAVTSIAYVKPALWALNESHFVNIKQELRLMEEGLPTHS----PKLDDWIVQAVRSQQPSTI 1443
            +TS ARQ++ K+V  +++SI +  FMEN  LSVIF G      +  T ++ADK   A +LDGNHR+ A + V   D  VPC CY DI DAN+KR+VADACND  S FA RTI+D ++++++L K    + + +R  ++ V  ++++E Y +A  + PS+ST   W K V  +    L ALK++ ES D S+DL+++TL ++  ++FM      +EQ   LQILARW +F     F      PPI  QAK  A W   +   I+  ++W Q+L     ++AY KPALW+  ++    ++ E+  + +GLP H     PKL++WIVQA+RSQQPS I
Sbjct:   11 NTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFKGV---HQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSA--EEQGFNLQILARWKKFQQGRAFKADIDTPPIIAQAKDVAQWYFALC-GIVPYQDWSQELKSEFENMAYAKPALWSFQKAFLDGLEDEVLKLSKGLPQHGSKSVPKLEEWIVQALRSQQPSRI 339          
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 6.660e-42
Identity = 130/436 (29.82%), Postives = 197/436 (45.18%), Query Frame = 1
Query:  295 RSGRVITRGGGRGDVGRASDAGGSGTPPIIATD-----NVTGILKKHQLGRFDLKIGSLRHTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTGDKDSSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVADACNDTASIFAPRTIFDSVFYYAALIK--TIAEDPNRRSTKAVTAREMREPYKQAGISPPSESTCNHWRKVVDVMTPAGLKALKEVSESADPSVDLSILTLEFLKMEEFMKSKEWPDEQALVLQILARWNRFNANTPFSRKHHVPPIFMQAKRAASWMRDIDKSIISREEWPQQLLEAVTSIAYVKPALWALNESHFVNIKQELRLMEEGLPTHSPKLDDWIVQAVRSQQPSTIVSILKEEASTRARYEEYRKKFEGAKNAARKQKLQQEAPVSPPSRTK 1581
            RS  V  RGG R       + GGSG     +          G+LK+  LG   + +  L +TS ARQ++ ++V  +++SI +  FME+   +       G   +  T           L       A + V+  D  VPC CY DI DAN+KR+VADACND  S FA RTI+D ++++++L K    + + +R  ++ V  ++++E Y +A  + PS+ST   W K V  +    L AL+++ ES D SVDL+++TL ++   +FM      +EQ   LQILARW +F     F      PPI  QAK  A W   +   I+  ++W Q+L                                                             IL+ +AS R  YE++ K+ + AKNA  ++KLQ   P+  PS  K
Sbjct:   24 RSAAVAARGGER-QASYQQETGGSGRRASSSVHLHDGAGAGGMLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSA--EEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALC-GIVPYQDWSQELKR----------------------------------------------------------QILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERK 397          
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Match: A0A6H5KJN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.130e-41
Identity = 124/424 (29.25%), Postives = 210/424 (49.53%), Query Frame = 1
Query:  355 AGGSGTPPIIATDNVTGILKKHQLGRFDLKIGSLRHTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTGDKDSSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVADACNDTASIFAPRTIFDSVFYYAALIKTIAEDPNR-----------RSTKAVTAREMREPYKQAGISPPSESTCNHWRKVVDVMTPAGLKALKEVSESADPSVDLSILTLEFLKMEEFMKSKE-WPDEQALVLQILARWNRFNANTPFSRKHHVPPIFMQAKRAASWMRDIDKSIISREEWPQQLLEAVTSIAYVKPALWA-LNESHFVNIKQELRLMEEGLPTHSPKLDDWIVQAVRSQQPSTIVSILKEEASTRARYEEYRKKFEGAKNAARKQKLQQEAPVSPPSRTKAG 1587
            AG     P  AT N+  +L  H +  +D+ + ++     +RQ +P  V  +  SI +HG+++ S   V+F   T  +   +T + A  L AV++DGNHR+AA +EV G D  + C CY+ IAD+  +++ +D CN T + F  RTI+D +++Y  ++ ++    +            RS  +VTA ++   +K AG   P+ +T   W  +V+      L AL+ +++   P      +T  FL      + KE  P  QAL++ I AR  + +          +     +AK  ASW+  I+  ++ R++W  +L   V   A+VK   +A   + H +  + E+R + E LP H   LD+ +V A+RS+   +I  +++E+ + R    E+   +E A N  R  KLQ   PV P  R   G
Sbjct:   24 AGDHSDDPTSAT-NIGEVLASHCVKEWDVPLKNITLAENSRQTSPTAVQEVVESIQSHGWVD-SFPRVMFSDLT--EGQEMTVELAATLHAVVIDGNHRLAACKEVYGEDRLIRCTCYRFIADSFARQIASDVCNVTTATFRARTIYDQLYFYNRMMTSLMAQESESXXXXXXXXXSRSKSSVTAAKLAACWKGAGSQAPAANTLRQWISIVNDTGQEALVALRALTDQRVPGYQS--ITKAFLADPRVRELKEEQPQTQALLVDIYARIPKTSKKGEREGLDEIGWALARAKMTASWVEGIEH-VVPRDQWSDKLKGTVRDFAFVKTGHYANYVKPHQLEREAEVRELRESLPPHVKDLDEDVVLAIRSKLHPSIRKVMREDLNFRPMLVEHEGLYESALNKVRSLKLQVTQPVQPRPRQPVG 440          
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Match: A0A6H5K2Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z9_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.030e-39
Identity = 120/413 (29.06%), Postives = 204/413 (49.39%), Query Frame = 1
Query:  322 GGRGDVGRASDAGGSGTPPIIATDNVTGILKKHQLGRFDLKIGSLRHTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTGDKDSSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVADACNDTASIFAPRTIFDSVFYYAALIKTIAEDP-----------NRRSTKAVTAREMREPYKQAGISPPSESTCNHWRKVVDVMTPAGLKALKEVSESADPSVDLSILTLEFLKMEEFMKSKEW-PDEQALVLQILARWNRFNANTPFSRKHHVPPIFMQAKRAASWMRDIDKSIISREEWPQQLLEAVTSIAYVKPALWA-LNESHFVNIKQELRLMEEGLPTHSPKLDDWIVQAVRSQQPSTIVSILKEEASTRARYEEYRKKFEGAKN 1521
            GGRG     S A   G  P  AT N+  +L  H +  +D+ + ++     +RQ +P  V  +  SI +HG+++ S   V+F   T  +   +T + A  L AV++DGNHR+AA +EV G D  + C CY+ IAD   +++ +D CN T + F  RTI+D +++Y  ++ ++               N RS  +VTA ++   +K AG   P+ +T   W  +V+  +   L AL+ +++   P      +T  FL      + +E  P  QAL++ I AR  + +          +      AK  ASW+  I+  ++ R++W  +L   V   A+VK   +A   + H +  + E+R + E LP H   LD+ +V A+RS+   +I  ++ E+ + R    E+   +E A N
Sbjct:   14 GGRGGA-STSSADDHGDDPASAT-NIGEVLASHCVKEWDVPLKNITLAENSRQTSPTAVQEVVESIQSHGWVD-SFPRVMFSDLT--EGQEMTVELAATLRAVVIDGNHRLAACKEVYGEDRLIRCTCYRFIADGFARQIASDVCNVTTATFQARTIYDQLYFYNRMMTSLMAQESESSSARRRPSNSRSKPSVTAAKLATCWKGAGSQAPAANTLRQWISIVNDTSQGALVALRALTDQRVPGYQS--ITKAFLADPRVRELREGQPQTQALLVDIYARMPKTSKKGEREGLDEIGWALAGAKMTASWVEGIEH-VVPRDQWSDKLKGTVRDFAFVKTGHYANYVKPHQLEREAEVRELRESLPPHVKDLDEDVVLAIRSKLHPSIRKVMHEDLNFRPMLVEHEGLYESALN 418          
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.540e-36
Identity = 114/399 (28.57%), Postives = 195/399 (48.87%), Query Frame = 1
Query:  394 NVTGILKKHQLGRFDLKIGSLRHTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTGDKDSSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTR--VPCICYKDIADANIKRVVADACNDTASIFAPRTIFDSVFYYAALIKTIAEDPNR-----RSTKAVTAREMREPY-KQAGISPPSESTCNHWRKVVDVMTPA--GLKALKEVSESADPSVDLSILTLEFLKMEEFMKSKEWPDEQALVLQILARWNRFNANTPFSRKHHVPPIFMQAKRAASWMRDIDKSIISREEWPQQLLEAVTSIAYVKPALWA-LNESHFVNIKQELRLMEEGLPTHSPKLDDWIVQAVRSQQPSTIVSILKEEASTRARYEEYRKKFEGAKNAARKQKLQQEAP 1557
            +V  +LK  +LG +++ + ++R T   RQ +P  V  I  SI   G+M  +   V        K   +T + A  + A +LDGNHR+ AA+EV G D +  + C CY+DI     K++V+DACN  +   A RT +D VF++  +I+ + ++ NR     +  K VTA++++  + K  G++P +++  NH     +  T A   LKA+ E   +    +  +     FLK +EF    E P EQA+ +++ AR  + N       K        QA  A SW+  ++ SI+    W   L E V ++A+ KP  +A   + H   ++++++ +E  LP H+P L     + + +     + ++L ++   R    EY KK     N    + LQ   P
Sbjct:   43 HVASVLKDLELGVWEIPLANIRFTEHCRQRSPAAVTAIVASITEMGWMPTAVPQVTLPEVQ--KGQVMTAELAATMTAYVLDGNHRLLAAKEVYGGDLKKTIKCACYRDITCPYTKKIVSDACNQCSETHAKRTTYDQVFFFGTMIQDVLDEQNRSRPRHKMKKTVTAKDLKACWAKVPGVTPSTQTLRNHLLISANFSTQAMASLKAMTEQKLAGHERISQT-----FLKTKEFTSLSEKPGEQAMYIEVFARCPKGNDG-----KIDKAAALAQASAATSWIAGVE-SIVPAHLWTVPLKELVNNLAFAKPGHYANYLKPHLSQLERDIKALESKLPAHAPALSGTEREVLLTNPGKQLRTVLSKDPGLREYLVEYDKKHGAVLNDVNLRHLQMVPP 428          
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.470e-6
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  349 SDAGGSGTPPIIATDNVTGILKKHQLGRFDLKIGSLRHTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTGDKDSSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCIC 705
            S AG  G  P  AT N+  +L  H +  +D  + ++     +RQ +P  V  +  SI +HG+++ S   V+F   T  +   +T +    L AV++DGNHR+AA +EV G D  + C C
Sbjct:  317 SSAGDHGDGPTSAT-NIGEVLASHCVKEWDAPLNNITLAENSRQTSPTAVQEVVESIQSHGWVD-SFPRVMFSDLT--EGQEMTVELPATLHAVVIDGNHRLAACKEVYGEDRLIRCTC 431          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.13.9 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KN26_9PHAE4.030e-6640.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G124_ECTSI6.660e-4229.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJN8_9PHAE1.130e-4129.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2Z9_9PHAE5.030e-3929.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK41_9PHAE5.540e-3628.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K280_9PHAE4.470e-633.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1025contigP-littoralis_Contig1025:65064..68732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1642
Hectar predicted targeting categoryother localisation
Exons8
Cds size1362
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1025.13.9prot_P-littoralis_Contig1025.13.9Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1025 65064..68436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789363.4010637-CDS-P-littoralis_Contig1025:65063..652551680789363.4010637-CDS-P-littoralis_Contig1025:65063..65255Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 65064..65255 -
1680789363.4101696-CDS-P-littoralis_Contig1025:65501..656791680789363.4101696-CDS-P-littoralis_Contig1025:65501..65679Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 65502..65679 -
1680789363.4228132-CDS-P-littoralis_Contig1025:65868..660151680789363.4228132-CDS-P-littoralis_Contig1025:65868..66015Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 65869..66015 -
1680789363.431156-CDS-P-littoralis_Contig1025:66161..663821680789363.431156-CDS-P-littoralis_Contig1025:66161..66382Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 66162..66382 -
1680789363.439022-CDS-P-littoralis_Contig1025:66747..668991680789363.439022-CDS-P-littoralis_Contig1025:66747..66899Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 66748..66899 -
1680789363.4470642-CDS-P-littoralis_Contig1025:67298..674091680789363.4470642-CDS-P-littoralis_Contig1025:67298..67409Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 67299..67409 -
1680789363.4586902-CDS-P-littoralis_Contig1025:68075..684361680789363.4586902-CDS-P-littoralis_Contig1025:68075..68436Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 68076..68436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789363.470552-UTR-P-littoralis_Contig1025:68436..684931680789363.470552-UTR-P-littoralis_Contig1025:68436..68493Pylaiella littoralis U1_48UTRP-littoralis_Contig1025 68437..68493 -
1680789363.482607-UTR-P-littoralis_Contig1025:68510..687321680789363.482607-UTR-P-littoralis_Contig1025:68510..68732Pylaiella littoralis U1_48UTRP-littoralis_Contig1025 68511..68732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1025.13.9

>prot_P-littoralis_Contig1025.13.9 ID=prot_P-littoralis_Contig1025.13.9|Name=mRNA_P-littoralis_Contig1025.13.9|organism=Pylaiella littoralis U1_48|type=polypeptide|length=454bp
MEQGGRSGRVITRGGGRGDVGRASDAGGSGTPPIIATDNVTGILKKHQLG
RFDLKIGSLRHTSVARQLNPKNVANIRRSIDTHGFMENSNLSVIFIGYTG
DKDSSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADAN
IKRVVADACNDTASIFAPRTIFDSVFYYAALIKTIAEDPNRRSTKAVTAR
EMREPYKQAGISPPSESTCNHWRKVVDVMTPAGLKALKEVSESADPSVDL
SILTLEFLKMEEFMKSKEWPDEQALVLQILARWNRFNANTPFSRKHHVPP
IFMQAKRAASWMRDIDKSIISREEWPQQLLEAVTSIAYVKPALWALNESH
FVNIKQELRLMEEGLPTHSPKLDDWIVQAVRSQQPSTIVSILKEEASTRA
RYEEYRKKFEGAKNAARKQKLQQEAPVSPPSRTKAGKRKRGQVGEDEGDD
EEDE
back to top

mRNA from alignment at P-littoralis_Contig1025:65064..68732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1025.13.9 ID=mRNA_P-littoralis_Contig1025.13.9|Name=mRNA_P-littoralis_Contig1025.13.9|organism=Pylaiella littoralis U1_48|type=mRNA|length=3669bp|location=Sequence derived from alignment at P-littoralis_Contig1025:65064..68732- (Pylaiella littoralis U1_48)
CACCCGCGCTACTACCGGTCGGAATCGCAGTGTCCCCAACGCATGCGCAT TCCAATTTGATATATCGCCTAGGCACCCGGACAGGTCAACATTGATACCC GAGACAGAATCGCAAGCAGGGTGTACCGGGGCGATAGAGACTTTTGTTGC GGGCCCACGCGGCGACACCGCGGGAGACTCTGTAGTTTGATCTGGTTCAT CAGGTGTCACAAACAAACAAACGCAAAAAAACGACGAAGTACATACAGCA GCGGTAGAGCACACGCACCCAAATTAGGGACACACCGGGCGCGAACATGG AACAAGGTGGCCGCAGCGGCCGCGTCATCACCAGGGGAGGAGGACGTGGC GACGTTGGTCGTGCTAGTGACGCGGGTGGGAGCGGTACACCTCCTATTAT TGCGACGGACAACGTGACAGGCATCTTGAAAAAGCACCAGCTCGGAAGAT TCGACCTCAAAATAGGAAGCCTTCGGCACACAAGCGTGGCGCGGCAGTTG AACCCCAAAAACGTCGCGAACATCCGTCGCAGCATCGACACTCATGGCTT CATGGAGAACAGCAACTTGTCGGTAATTTTCATAGGGTACACGGGTGATA AGGACAGCAGTCTCACTCCTGATGAAGCCGATAAACTCGTGGCTGTCCTG CTCGACGGTGAGTCAGGCAGCAGTGAAATATATTTACTCCGACGTACAGT AGACTATGAGGTATGCTTGTTGTCAAGAACAACAACAGCGGCAGCGGCAG CAGCAGCAGCACAGCTAACCACCACCGACCTGCCTCCAGCGTAGTTCGTA CAGTGTGATATTTCGCTGGCTCTACTGCTGTTGTTGCTGCTTGCTGTGTA TGTGTATGTGTGTGTAATCGTTTATTTCGTCCCACCTATTCTAGGCACCA GTCTACAAGTTTTAGATAGGTGGGAGGGAGCACCAGACGGGGTCAGAAAG AAGGAAGAAGTATAATACACACGGTGGTTTTCTTGTAGTTTTTTCCTCCA TCGACCTTCTTGTGCGGTGCTTCTGTAGATACCTCGAAATAATATGCGTA CCCCACCCCCATGTACAAGGCGTAGGTGTGCCATACTGCGGGTGGAGTAT CGACCCCCGAACAACAACAGCTATCATACACTTAGTACCTTTTTCCTTTC ATGCCAAGTCTTAGCAATTTCCGGGAGGGGCTGCATGGATCCCTGTTGTA CACAAATCACTGCTGTAAATCTACCACGTACATTTGTGTGCTGCTGTATG TATTATTCATGTCCCCCCTACCCGTCCCTTACTGTATCCGCTTCGTGGGT CTTTTGCTTGCGTTGAATCGAAGGTAATCATCGCGTGGCGGCTGCGAGGG AGGTGTTGGGAAGCGACACGAGAGTCCCGTGTATCTGCTATAAGGACATC GCCGATGCGAACATCAAGAGGGTGGTGGCAGACGGTGAGCACTAATCAAT GCGTACGTATATTGTCCTCCCGCGATTGTTTACCATGTTGCTATTTAGGA GGGAAGCAGCAAGCAGCAACCTCCAGCAACAGCTTTGACCGCCGTGGTAC GGGCTCATGGTCTGTGTTTTGTAAGTTAAGAGTCATCAGCGTATCATAGT ATGTCACATTCTGCACCTCCAGTACATTAGGGTTAAAGCACGGGCGGAGA GTTTCCGCTGCTGTTGTTGTGTGACGTCGGCCGGACGGTGCGTCCACCCG GCGCCAAGAATAGGTGGGATCACAAATATCCAAACTACTGCTGTACGCGT GGGGCTGATCCGTCACCTGCATTGGCCTCCCTGTGCTTCTTTTGCTTGCA TAATTTTACCTCATTACTACCGGCCCACCTCAGCGTGCAACGACACCGCG TCGATTTTTGCGCCGCGCACCATCTTCGACTCAGTCTTCTACTATGCTGC CCTCATCAAGACCATTGCCGAGGACCCGAACAGGAGGAGTACAAAAGCTG TTACCGCAAGGGAGATGAGAGAGCCCTACAAGCAGGCGAGTCCCGTTGAC AGTCTGATGAGCGTGTCATAGCACTGCCAATACATGTTAATCGAGTACAA AGCTGCTTACAGCGGACGGTATGCGTACACACACGCTCACATTTGTATTT TCTTCTTTATTTCCCAATCTATAACTGTAGTAGGTGGTTGATGATTTACA CTGGTTTCTTTTGGAAGGGCCGTTTAGTTAATACGGAGTACTTCATATTT TGTACGGGTGCCACGTGTCGTTAAATACACCACCAATCTTTACTTTATCA AACCCACGGTGGGTCCACCTGTCGACCAGAGAAAGGGAGGAACCTTGTCG TTTTTTTCAACTCCGTGATTGACATGTGGTTATTATGCCCTGCTCACCAG GCCGGAATATCTCCTCCGAGCGAGTCGACGTGTAATCACTGGAGGAAGGT TGTTGACGTGATGACGCCGGCCGGCCTCAAGGCCTTGAAGGAGGTGTCAG AGTCCGCTGATCCTTCGGTGGACCTGTCGATCCTGACCCTCGAATTCCTC AAGATGGAGGAGTTCATGAAGTCGAAGGAGTGGCCGGACGAGCAAGCACT GGTCCTGCAGATTCTCGCCAGGTACACGGATGAGGCTTGGCACCCGCCTT GGTGGCGCTTAGTGGTAGTGTTTTCGCGGTTTCGCCTTCTTGATGCGGGA AACACGTTTGTTTGTAGACACATCCGATTCTTAATATGCCGCGCGCATTG TCCTCAACGAAACTCAGGTGGAATCGATTCAACGCGAACACCCCATTTTC TCGCAAGCACCACGTGCCTCCCATCTTCATGCAGGCAAAGCGTGCCGCCT CATGGATGAGGGACATTGACAAGTCGATTATATCCCGCGAGGAATGGCCG CAACAGCTCCTAGAGTAAGTTTTGTCCTGTAGGAGGGAGAAAAGGCGTGA ACGTGCCGCGTGTGCATATTCATCCAACCCAATTTTGTTGTCCGCGACTA TAGGTGAACGATGTGCGCGAAATATTGACTGGAGCTGCAATTTCACAATC ATGTGCGTCTTCGGATGTAACTATCGTATCGTCGTCATCCCCCCGTTTCG CAGGGCAGTCACCTCCATCGCGTACGTCAAGCCCGCTCTGTGGGCCCTGA ACGAAAGCCATTTCGTGAACATCAAGCAAGAGCTTCGTCTCATGGAGGAG GGCCTCCCGACACACAGCCCAAAGCTAGACGATTGGATCGTTCAAGCTGT GCGTTCCCAGCAGCCCTCCACAATCGTTTCGGTAAGTCATCTAGCGAGTA GGTCAAGTTCATGTCTGCATTGTATGTATGTATGCCCCGACTTATGTAGA TAAACAAAAACGACCACGCTTCGTGGACTACGATAGTCACACTTTTTTAG CTCGGAGCGTTGACCTAACTCTGCTGATTTTTGTCTTTGTCCGTTTTCGC TTGTGCAAGATACTGCTAGTACTCTTCTGGATGTGAACAACCGCGCACGT CCTCCCTTTCTTTTCCCGTACGAAAAGATTTTGAAGGAAGAAGCCAGCAC GCGCGCCCGTTACGAAGAGTATCGTAAGAAGTTCGAAGGAGCGAAGAATG CCGCTCGCAAGCAGAAGCTCCAGCAGGAAGCACCTGTGTCGCCGCCGAGT AGGACAAAGGCCGGCAAGAGGAAGCGGGGGCAGGTCGGTGAGGACGAAGG AGACGACGAGGAAGATGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1025:65064..68732-

>mRNA_P-littoralis_Contig1025.13.9 ID=mRNA_P-littoralis_Contig1025.13.9|Name=mRNA_P-littoralis_Contig1025.13.9|organism=Pylaiella littoralis U1_48|type=CDS|length=1362bp|location=Sequence derived from alignment at P-littoralis_Contig1025:65064..68732- (Pylaiella littoralis U1_48)
ATGGAACAAGGTGGCCGCAGCGGCCGCGTCATCACCAGGGGAGGAGGACG
TGGCGACGTTGGTCGTGCTAGTGACGCGGGTGGGAGCGGTACACCTCCTA
TTATTGCGACGGACAACGTGACAGGCATCTTGAAAAAGCACCAGCTCGGA
AGATTCGACCTCAAAATAGGAAGCCTTCGGCACACAAGCGTGGCGCGGCA
GTTGAACCCCAAAAACGTCGCGAACATCCGTCGCAGCATCGACACTCATG
GCTTCATGGAGAACAGCAACTTGTCGGTAATTTTCATAGGGTACACGGGT
GATAAGGACAGCAGTCTCACTCCTGATGAAGCCGATAAACTCGTGGCTGT
CCTGCTCGACGGTAATCATCGCGTGGCGGCTGCGAGGGAGGTGTTGGGAA
GCGACACGAGAGTCCCGTGTATCTGCTATAAGGACATCGCCGATGCGAAC
ATCAAGAGGGTGGTGGCAGACGCGTGCAACGACACCGCGTCGATTTTTGC
GCCGCGCACCATCTTCGACTCAGTCTTCTACTATGCTGCCCTCATCAAGA
CCATTGCCGAGGACCCGAACAGGAGGAGTACAAAAGCTGTTACCGCAAGG
GAGATGAGAGAGCCCTACAAGCAGGCCGGAATATCTCCTCCGAGCGAGTC
GACGTGTAATCACTGGAGGAAGGTTGTTGACGTGATGACGCCGGCCGGCC
TCAAGGCCTTGAAGGAGGTGTCAGAGTCCGCTGATCCTTCGGTGGACCTG
TCGATCCTGACCCTCGAATTCCTCAAGATGGAGGAGTTCATGAAGTCGAA
GGAGTGGCCGGACGAGCAAGCACTGGTCCTGCAGATTCTCGCCAGGTGGA
ATCGATTCAACGCGAACACCCCATTTTCTCGCAAGCACCACGTGCCTCCC
ATCTTCATGCAGGCAAAGCGTGCCGCCTCATGGATGAGGGACATTGACAA
GTCGATTATATCCCGCGAGGAATGGCCGCAACAGCTCCTAGAGGCAGTCA
CCTCCATCGCGTACGTCAAGCCCGCTCTGTGGGCCCTGAACGAAAGCCAT
TTCGTGAACATCAAGCAAGAGCTTCGTCTCATGGAGGAGGGCCTCCCGAC
ACACAGCCCAAAGCTAGACGATTGGATCGTTCAAGCTGTGCGTTCCCAGC
AGCCCTCCACAATCGTTTCGATTTTGAAGGAAGAAGCCAGCACGCGCGCC
CGTTACGAAGAGTATCGTAAGAAGTTCGAAGGAGCGAAGAATGCCGCTCG
CAAGCAGAAGCTCCAGCAGGAAGCACCTGTGTCGCCGCCGAGTAGGACAA
AGGCCGGCAAGAGGAAGCGGGGGCAGGTCGGTGAGGACGAAGGAGACGAC
GAGGAAGATGAG
back to top