mRNA_P-littoralis_Contig17.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.121.1
Unique NamemRNA_P-littoralis_Contig17.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:549523..549863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size341
Hectar predicted targeting categorysignal anchor
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.325286-UTR-P-littoralis_Contig17:549522..5495391680789813.325286-UTR-P-littoralis_Contig17:549522..549539Pylaiella littoralis U1_48UTRP-littoralis_Contig17 549523..549539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.3349297-CDS-P-littoralis_Contig17:549539..5498631680789813.3349297-CDS-P-littoralis_Contig17:549539..549863Pylaiella littoralis U1_48CDSP-littoralis_Contig17 549540..549863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.121.1prot_P-littoralis_Contig17.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 549540..549863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.121.1

>prot_P-littoralis_Contig17.121.1 ID=prot_P-littoralis_Contig17.121.1|Name=mRNA_P-littoralis_Contig17.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MGRVSAITAVSINLVHTPCYSFHQFPLALLCRRRLILSGLSTLASSSFPL
PLLLLLLLGFLIACCAELSLRSLSCTFPACLLLLPVPSGHKPRSPLYHPR
MYVNSRS*
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mRNA from alignment at P-littoralis_Contig17:549523..549863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.121.1 ID=mRNA_P-littoralis_Contig17.121.1|Name=mRNA_P-littoralis_Contig17.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=341bp|location=Sequence derived from alignment at P-littoralis_Contig17:549523..549863+ (Pylaiella littoralis U1_48)
ATGCAGTGAGGAAACGGATGGGAAGGGTTAGTGCTATCACAGCAGTGTCA
ATCAATCTGGTGCATACGCCGTGCTACTCTTTCCATCAATTCCCTCTTGC
TCTCCTCTGCCGCCGTCGTCTCATCCTTTCGGGTCTTTCTACGCTTGCTT
CCTCGAGCTTCCCCCTCCCCCTTCTCCTCCTCCTCCTCCTCGGTTTTCTC
ATTGCTTGTTGTGCTGAGTTATCTCTCCGTTCGCTTTCCTGCACGTTTCC
TGCTTGCCTCCTTCTCCTCCCTGTGCCAAGCGGTCATAAACCGCGCAGCC
CCCTTTACCACCCCCGTATGTATGTAAATTCGCGCAGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:549523..549863+

>mRNA_P-littoralis_Contig17.121.1 ID=mRNA_P-littoralis_Contig17.121.1|Name=mRNA_P-littoralis_Contig17.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig17:549523..549863+ (Pylaiella littoralis U1_48)
ATGGGAAGGGTTAGTGCTATCACAGCAGTGTCAATCAATCTGGTGCATAC
GCCGTGCTACTCTTTCCATCAATTCCCTCTTGCTCTCCTCTGCCGCCGTC
GTCTCATCCTTTCGGGTCTTTCTACGCTTGCTTCCTCGAGCTTCCCCCTC
CCCCTTCTCCTCCTCCTCCTCCTCGGTTTTCTCATTGCTTGTTGTGCTGA
GTTATCTCTCCGTTCGCTTTCCTGCACGTTTCCTGCTTGCCTCCTTCTCC
TCCCTGTGCCAAGCGGTCATAAACCGCGCAGCCCCCTTTACCACCCCCGT
ATGTATGTAAATTCGCGCAGTTGA
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