mRNA_P-littoralis_Contig17.158.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.158.1
Unique NamemRNA_P-littoralis_Contig17.158.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:699658..703335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.998957-UTR-P-littoralis_Contig17:699657..6997691680789812.998957-UTR-P-littoralis_Contig17:699657..699769Pylaiella littoralis U1_48UTRP-littoralis_Contig17 699658..699769 +
1680789813.030005-UTR-P-littoralis_Contig17:703290..7033351680789813.030005-UTR-P-littoralis_Contig17:703290..703335Pylaiella littoralis U1_48UTRP-littoralis_Contig17 703291..703335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.008025-CDS-P-littoralis_Contig17:699769..6999891680789813.008025-CDS-P-littoralis_Contig17:699769..699989Pylaiella littoralis U1_48CDSP-littoralis_Contig17 699770..699989 +
1680789813.018388-CDS-P-littoralis_Contig17:703120..7032901680789813.018388-CDS-P-littoralis_Contig17:703120..703290Pylaiella littoralis U1_48CDSP-littoralis_Contig17 703121..703290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.158.1prot_P-littoralis_Contig17.158.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 699770..703290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.158.1

>prot_P-littoralis_Contig17.158.1 ID=prot_P-littoralis_Contig17.158.1|Name=mRNA_P-littoralis_Contig17.158.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MRGGRSKVRNCCACASLLGGSHDPPGYFASRRQTCMIKTRHRETGREEER
ERETEKGTSALYRTCCMSDLLLRFRNRHEDLPAYLVRLLVVASCWGRYAS
GHGKRPPSDFVSSTDVARRHWAEIATFVF*
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mRNA from alignment at P-littoralis_Contig17:699658..703335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.158.1 ID=mRNA_P-littoralis_Contig17.158.1|Name=mRNA_P-littoralis_Contig17.158.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3678bp|location=Sequence derived from alignment at P-littoralis_Contig17:699658..703335+ (Pylaiella littoralis U1_48)
CCCCACGCGAGCATTTCGTTTCAGGACGGGGGGAGGTACCGAGCATTGAT
ATCCCGCCGTGGTGTGCTTTGAACTGGCCTTGTTGCGCTACTCTGTCCAA
ATTCAAAAGTCTATGCGAGGGGGGCGCTCAAAAGTGAGAAACTGCTGTGC
ATGTGCCAGCCTCTTGGGAGGCAGCCACGATCCCCCTGGATACTTCGCGA
GCCGCCGACAGACATGCATGATCAAGACCAGACACAGAGAAACGGGAAGA
GAGGAAGAGAGAGAGAGAGAGACTGAGAAAGGGACAAGTGCGCTCTATCG
AACATGTTGTATGTCGGATCTCCTACTTCGCTGTGAGTGTCGAGCTCGTA
ATGCCCGATGGGTTTTTGCGTCGTGAACAATCTTAGTAGTGCTTGTACTG
TTTGGTCCATCTTCTTTCAGTCTAGACAGCGGTCACACAGAAGGATCCCG
CTCCTTGCGTCCCCCTACCCCACCTTCCTTCTGTGATGCATGCTTTTAAT
TTACTCGTGATAAGATTTACAGCAACCCACCCTCACTCGTCCTGGATTTT
CACTCAAAGAGCCAGCGAACAGGCGTCTTTCCAACGAAAAGGAGTTGATG
GTAAATATCACCCCCCCTACCATTTTTTTCCCAAGACAGCAGTGCATTTC
ATTTGCGGTCCTGTCCTCTCCTGCTTTATCTCATAGGCCCGTATCGCCTC
TCTCTGGATGGACATGTAGATACCGATTAGCAGCGAACCCTAGAGTAATT
CAGAAAGTTCACATGTGTTTCTATCGATCCATTTCATAATGTAGTGCCGT
TACAGCTCCGCACAGGTTATCCCAAATATGATACTCTGCTGTATCATCTG
CTGCTGTGTCATGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCA
GTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAA
ATAAAAAATAAAATATATGGACTATGATCACCCACAGTCAGATCAGACGT
GGTACCGTTGGGGTACCATCTGTGGTGGCCAGAATACCAAACAAAGTGCT
TAGTCGTGATGCATTCTCCGCAAAAAAACTGAAGGGGTCCCATTCAACCT
TACTATTTCGAATAAACATCCTCTCTTTATCCAGTACACAGATAGAAATC
GACCTTCCCGCGGGTGAATTAAGCCGGGGTTTTTCTAGACATGTCAGTAG
AATACATCATGTAGAGGCGACGTGCGTGTTGGCAACCTCAGAGCTTTTGA
TGGTGGCTGAGATATCGGTGGTCGAAGGTATGTGGTCAGCAGTCCAAAAA
TCGTCCGCATCTCGGCCCGAAACCAAACATCTTACATGATCTTCCACTGC
TGTACTCGCTCCCATGGGCCCCGATCTCCTGAACTGGTGTCCTCGGCAGT
AAGTGGCATGAGCTACTGCTGCTGTAGACCCGAAGTTCCGGAGGTTGGGG
CCTATGGGGGTGAGTACAGCAGTGGAAGATCATGCAACAAGGTGTTTGAT
CTCGGGCCGAGATTCGGACAGAATCCCGACTGCTGTACAACATTTTCAAC
CACCGATAGCACAGCCCCAGCACAGCCCCAGCAGAAGATTTTAGCTAGCC
AACACACACGTCGCTTCTACCTAATGTCCCCTACTGATATAATTCGAAAC
CCCGGCGTAACTCACACCACAGGTCTCATTCGAGCGCCTCTCGTGTTCAC
TGTTTTGTCTTGAATTTTGTCTGGGGCAGCTTATCATCTTGGATGTAGAG
ATCGCGAAATCAATACCTGGTACGGAGTTCTAAATCACAACAATTGTGTC
GCGATCACGCCCCAACCACCACCTTCCAGCCGTTGTTTCGGCCCCCAACC
CTTTTCTATTGGTCTGATGGCCCTGCTTCGTGACGTTTTGCCCTTTGCAG
GATTCCAAAATTCAGCAAAAGTGGAAAACATTGAATAGGGTCCCTGAAGG
GTCCCGGGACTAGGGCGGTAAAAAATCCCCTACTGAAAAACCCAATTTTT
GATCTGAAACATCATTTCCAGTCTTTGATCAAGTCAAAGCTTATTTTGAT
AAGGCTCAAACATGGGCTGTTTTCCGCGGGAGTCCCGATAGCCTCGAACC
AATCAGGTCTGTAGTAGCTACGTGCGCGTCGGCGCATTCAGATCTGCTGC
TGGGGCTTAGATATCGAAGTTCGCAGCAGTGGCACAAAAACTCCGCAGGA
TCCCTGAAATACTCCGCAATCCGGACTGACACCAAACGTTTGACGCAGCT
GTACTCGCCCCCATCGGCACCAATCTTCTGAACTGCGGTTCGTCCGAGGT
AGCTAGTGGCATGAGCTATGCTGTTGACCCGTAGTTCGGGAGGTTGGGGT
ATGTAGCGGCGAGTACAGCAGTGGGAGATAGCACAGCAGTGCAAGATGTT
TTTTGGAATCTGCCCATTTTGCGGAGTTTTTTATCCTCTGCTGCGACCAT
CGATATCTAAAAGCCCCAGCAGCAGATCTGAATGTGCCGGAGTACACGTA
GCTATTACATGACGTTCTTCTTCAGGTTGGTTCCAGGTTATCGGGATCCC
GCGGACAACAGCCCATATTTGAGCCTTATCAAAATAAGCTCTCTTGACTT
GGTTTTAGAGTATTTACATTTTTTATCTTGATATTTATGTCGGAGATTGG
AGGTAGACATGTGATATGCATGTAAAGAGAAGTCCCCGCCGCCGTTGTGT
GCGATAACCAACAGTTTTCCTCTTTCCCGACACCTTCCTGCTCGTGTGAG
GTACCCGGTGTGTGATTGTCAGGGCCCGTTCGCGCTGTTTTTCAAAATCC
GTGCCTCTCAACGATCTGTTGTCCCCGGATCCTTAACGAACGGAATAAGT
AGTGGTGATATCATATCAAATGATGACAATGACATGGTCCGTTTTTGTTT
TTGCCGGAGTTTCCTTGTCGTGCCTTTATTTGGTGGACTGAGGGGATCTC
CCGAGTACTATATACCCCTTCTGGGGCAAGCAGCCTGTGACCACGGAAAT
CGTACCTGATCGGTGGAGTACGGACATTAGAAGGTACTGAGGAGAGATCG
GAATGGTTTTTAATGTCAAGACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAGCAGCAATCATGAGTACTTATCTTCGTGC
CGTCTTCCGGAGGGATTGACCACTACAACTTGGAAGCACTACGTGTTGCT
GCCCCTACACAAGCAAGTAGCCCCCCCGTAATCGTGTGTCGCACGTACCG
TAGTACTCGTATCGTGTCCGACGTGTTTCTAGCACCGTCACGTATAGTGC
GAGGCATGCGTGATACTCTTATACGATATACATATGGGATTATATGAGAT
ACCGTGCACCATATTCCCGAAGTAATGCGAGGCATGCGTGATGCTCTTGT
ACGATATACACATGATACGTATGATACCATACATCCGTCTGCGTAATGTG
TTTTCTTCATCAGTCCGCAATAGGCACGAGGATCTCCCTGCGTACTTGGT
ACGTCTTTTGGTAGTCGCATCTTGTTGGGGGAGGTACGCCAGCGGCCACG
GAAAGCGCCCGCCGTCGGATTTCGTCAGCAGTACGGACGTTGCAAGGAGG
CACTGGGCAGAGATCGCAACGTTTGTTTTTTAGATAAATGTAGAGCTTCC
TTCCCTGCCCCCCTCCCTCCCTTCCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:699658..703335+

>mRNA_P-littoralis_Contig17.158.1 ID=mRNA_P-littoralis_Contig17.158.1|Name=mRNA_P-littoralis_Contig17.158.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig17:699658..703335+ (Pylaiella littoralis U1_48)
ATGCGAGGGGGGCGCTCAAAAGTGAGAAACTGCTGTGCATGTGCCAGCCT
CTTGGGAGGCAGCCACGATCCCCCTGGATACTTCGCGAGCCGCCGACAGA
CATGCATGATCAAGACCAGACACAGAGAAACGGGAAGAGAGGAAGAGAGA
GAGAGAGAGACTGAGAAAGGGACAAGTGCGCTCTATCGAACATGTTGTAT
GTCGGATCTCCTACTTCGCTTCCGCAATAGGCACGAGGATCTCCCTGCGT
ACTTGGTACGTCTTTTGGTAGTCGCATCTTGTTGGGGGAGGTACGCCAGC
GGCCACGGAAAGCGCCCGCCGTCGGATTTCGTCAGCAGTACGGACGTTGC
AAGGAGGCACTGGGCAGAGATCGCAACGTTTGTTTTTTAG
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