mRNA_P-littoralis_Contig17.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.21.1
Unique NamemRNA_P-littoralis_Contig17.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:86681..89502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.7694576-CDS-P-littoralis_Contig17:86680..868391680789812.7694576-CDS-P-littoralis_Contig17:86680..86839Pylaiella littoralis U1_48CDSP-littoralis_Contig17 86681..86839 +
1680789812.7789576-CDS-P-littoralis_Contig17:89383..895001680789812.7789576-CDS-P-littoralis_Contig17:89383..89500Pylaiella littoralis U1_48CDSP-littoralis_Contig17 89384..89500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.21.1prot_P-littoralis_Contig17.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 86681..89500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.21.1

>prot_P-littoralis_Contig17.21.1 ID=prot_P-littoralis_Contig17.21.1|Name=mRNA_P-littoralis_Contig17.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
TAHVFPAGGTNTIDLDVSEASAAASVLRPCSLRSCACIAQSWPRRKFVPA
RRAVRNDSRHELRRWRPRGILQEQVWWRRKRGRRRRRRRGWP
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mRNA from alignment at P-littoralis_Contig17:86681..89502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.21.1 ID=mRNA_P-littoralis_Contig17.21.1|Name=mRNA_P-littoralis_Contig17.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2822bp|location=Sequence derived from alignment at P-littoralis_Contig17:86681..89502+ (Pylaiella littoralis U1_48)
ACCGCGCATGTTTTCCCAGCTGGTGGCACGAACACGATCGACCTCGACGT
CTCTGAAGCTTCTGCTGCCGCTAGCGTTTTGCGCCCGTGTAGTCTTCGGT
CTTGTGCCTGTATCGCACAGAGCTGGCCGAGGAGAAAATTTGTTCCAGCA
AGGAGGGCGGTGAGATATGGGTCACTGGTCACTGGTCCTGTGCAAAATTT
TCAGTACCGCCAACGAGAATGCTCGCTCTCCGAGAGATCCCACTGGCAAC
CTATTGCGGCATTGGCATGTGTTGTACTGCCATGTCCCGAGTGGTTTCAA
TGCACATGCGTAAATGTAAATGTTGAACATACATGGAACGAAATACCACA
GCAGTGAGGGTAGGGACCGCGGATCCCTGCTCGCCAGAAAAAATTTCACG
CATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCC
TCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAGGGT
GCAGACTAGTGTGCCAGAGAATATGGGATGACAACACACACCACAGCAGT
GCTTTGTTGTTGTTGTTGTTGATCATCGCCAAAATCTAGCCCGTGGTCAC
AAAAAGAGCTAAGCCCTACGAAGATCCTAAAAACAGAAAGAAACTACGGA
GCACAAGGGAATACGATACCCAACCAAGACCGAAGAAGATACACCTTCCT
ACGCGGTGTGCATCACTGAACTACAGCAGTCACAGCAGTACCAACAGTAC
CAACAGCAAACGTACTTCCAGCGTCGTCCATTTGACTACAATATCGTGTT
CAGTCTCCTCCCGCCCCACTTAACCAATAAACTTCTCTGTAGTTGCAACA
CTAGCTGCAGACTACAGCAGTTAGTTGCTGTCTGGAGTGCTGCCTGCAAC
GTACAAGTAGCCCCGGCAATCGGAGAAGACAGAAAAAGAAAAAACACGAA
AACACACGTATCATCAGATAGATGTTGTCGATAATGATGTCTCCATGCCG
TCCTTGCGACGCTGGTGATGATGTCGCCCTAAACATGTCCTCCTTGTCTG
GGTCCACGTCGCTGTTGGCGTTGCCCAAGGCCACATCACCAGCACCATGC
TCTCGTAACGCTTCTTCACTGCCGGCGTTGCCTTAGGTCACCTCCATCAC
CGCCGCTCTCTCACATAACAGCTCTTTCTTGTTGTTCGTTTCCAATCAGT
TCCCTAAAAAACTCTACACTTGAGGTATAAGTCTTCTGAAAAAAAAGTTC
ACGCTCGGAGTGAGATCGACCAAGCTCTTCCCCGTTCGTCGCTGCTCGTC
TACCTCCGTCCTTGGCTGCGAAACTGGTTACTGTACGGCACAATCCCTCT
TGTGCATCCTAGATCGTACCGTCTTTTCACCTGTGGCGTCACCTGCCTCC
GCGCACAAATGCTTGAGATTTACATTGCTGTACTGCCGCTGTAACCAAAA
GGCCCGCGAATCCGCACATTTGCACCTGGCACACCAACTGCGACCCAACT
CTACCGCCACGCCCGTGGCGTTCGACCACAGCGCAGCAAGAAGGTATCAC
TCCTTGAGGGTGAGTCCGGCCTTACACACCCGCCAGAAAGACCCCCCCAA
CTCGCTTTGGGTCATGCTCACAGCAGACCTTGCCTAGGCAGCGAGGGAAC
GGAGTGCTTTGCGCCCCACCCCGAGTGCGGTGTGTACGTACCTGATGTCT
ACCGCTACACAAAAAGCCCCAAGCCGGCCAGGCAAACGACTGAACGGGCT
GTTTGTTGCCAGTTGCCAGTCCCCTGTTCTTTCACGAACCATGTCCAAAC
TTACGCAACCATTGCAGATTTTTTCGTGGAAAGCTTAGCTTGCAGCGCCA
GACGCCAGGAACGTGCCACAGCAGCAGTTGATCCCCACACGTGTAACTGA
TGTTGGCAGCAACTGCGCACTCTGGATGTAACTGGTCACGCTATCATACT
ATCATATCATGGGTGATTCTGAAGTCCTTTGTACCGCCTTCTGTGGGATA
CTCTCCTACCGGTACAGCAGTACTCCATACTCCACACACACCCTGAGCCA
TTTTCGGAGAGCTGTTTCAGAATCTCAATATTTCCGCCGCAGCAGAAAGG
ACAGGGTCGTTATCGAAAAGCGCGATCAGCGTTGGAACCATCTCATCCGC
ATCCAAGCGAGAGCCTCCCGGAGACGTATACTGCTGTGGTACTCCGTACC
TGTACGAACATCATTTGATGTTGGCGCCATTCCGCCATTTCCAGCAATTT
AAAAAATAAATAAAAAATCATCCAAGGGGGAAGTGTGGTATCTCTCGCAA
CCCACTCCGGTCTTTCCCAGTATTTCCCCTCCTTAGGCCACCGAGTTGCT
CGAGATTAAGTATTCAACACGTCAGGTGGCGGACTGTGCATCCGACCGAG
CCCGCGTGGGTGCGTACATGTGAAGCTCAGGGTGCCGACCCTTTCGTGTG
AAGCTGTTATCTGTATCATACCTGTTCTGGCACCCTTTTCTACCACCGAC
TAACTACCTGTACGCTCAGAGAAAGCCAGGTACTAAGTAGCGCTCAGCGA
TCAAGAACCACAATTAAACTTCGAGAGCGTCTTCTTGCGAGAACACTACA
CTGCCTCTCTCTCTCACACACACTCTCCATCTCTGTCTCTTTCTGTTGCT
CGCTCTTCCTCTCCCACACTCACGTTTTCGCTGCCGTTCTCTGTCTCCAG
TAGGTTCGGAACGACAGCCGTCATGAGTTACGGCGGTGGCGGCCGAGGGG
AATACTACAAGAACAAGTATGGTGGCGGAGGAAGAGGGGGCGGCGGCGGC
GGCGGCGGCGGGGGTGGCCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:86681..89502+

>mRNA_P-littoralis_Contig17.21.1 ID=mRNA_P-littoralis_Contig17.21.1|Name=mRNA_P-littoralis_Contig17.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig17:86681..89502+ (Pylaiella littoralis U1_48)
ACCGCGCATGTTTTCCCAGCTGGTGGCACGAACACGATCGACCTCGACGT
CTCTGAAGCTTCTGCTGCCGCTAGCGTTTTGCGCCCGTGTAGTCTTCGGT
CTTGTGCCTGTATCGCACAGAGCTGGCCGAGGAGAAAATTTGTTCCAGCA
AGGAGGGCGGTTCGGAACGACAGCCGTCATGAGTTACGGCGGTGGCGGCC
GAGGGGAATACTACAAGAACAAGTATGGTGGCGGAGGAAGAGGGGGCGGC
GGCGGCGGCGGCGGCGGGGGTGGCCG
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