mRNA_P-littoralis_Contig1691.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1691.1.1
Unique NamemRNA_P-littoralis_Contig1691.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1691.1.1 vs. uniprot
Match: UPI001EF9E67E (hypothetical protein n=1 Tax=Nitzschia traheaformis TaxID=1881117 RepID=UPI001EF9E67E)

HSP 1 Score: 195 bits (496), Expect = 9.860e-62
Identity = 93/144 (64.58%), Postives = 119/144 (82.64%), Query Frame = 1 
Query:    1 MEYDKTRYLELLKESQNLEKKGLSLYREDEEKYLELLKYEIRLEDQKFWESRKKYFSIMNNFINEKLTGEDFDDLFTCLWREDRDRPIINYEPDIASKDFGAWINKIFFVCEDFNFEPEAEKNEEYCEKWLKDHVIRLLIQMEK 432
            MEYDK RYLELLK++++LEKKG+SLYRED ++YLELLKY++RL DQK+WE++K YFS+M+N INEKLT EDF D F CLW +DRDR  +N EP+I SK+F  W++KIF  CE   FEPEA+KNE+Y +KWLKD V  +LIQ++K
Sbjct:    1 MEYDKIRYLELLKQAESLEKKGMSLYREDRDRYLELLKYKVRLSDQKYWENKKNYFSVMSNLINEKLTAEDFVDEFLCLWEKDRDRVAVNCEPNIVSKEFAKWMDKIFSRCE--VFEPEAQKNEQYGKKWLKDSVSNVLIQIQK 142
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BLAST of mRNA_P-littoralis_Contig1691.1.1 vs. uniprot
Match: A0A516ZBK1_9STRA (Colicin_immun domain-containing protein n=1 Tax=Halamphora calidilacuna TaxID=2133758 RepID=A0A516ZBK1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 6.530e-38
Identity = 68/146 (46.58%), Postives = 102/146 (69.86%), Query Frame = 1 
Query:    1 MEYDKTRYLELLKESQNLEKKGLSLYREDEEKYLELLKYEIRLEDQKFWESRKKYFSIMNNFINEKLTGEDFDDLFTCLWREDRDRP--IINYEPDIASKDFGAWINKIFFVCEDFNFEPEAEKNEEYCEKWLKDHVIRLLIQMEK 432
            M+Y   RY  LL++ +  +K+G+S Y+ + E Y+ELL Y+IRLE+QK+WE+R+KY SI++ F+N   T EDF D F  LW++DRDR    IN+EPD  S++F + I KIF  CE   FEPE+++ +EY EKWLK+ +  +  +++K
Sbjct:    1 MDYHTKRYFYLLEKEEIFKKQGVSFYKVNREDYMELLNYKIRLENQKYWENRQKYLSIISEFLNGITTAEDFSDEFLDLWKKDRDRDGSKINFEPDTISEEFSSLIGKIFICCE--IFEPESKEKDEYDEKWLKNSIKEIFDEIQK 144
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BLAST of mRNA_P-littoralis_Contig1691.1.1 vs. uniprot
Match: A0A023JEE1_9STRA (Uncharacterized protein n=1 Tax=Eunotia naegelii TaxID=1458866 RepID=A0A023JEE1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.780e-5
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    7 YDKTRYLELLKESQNLEKKGLSLYREDEEKYLELLKYEIRLEDQKFWESRKKYFSIMNNFINEKLTGEDF 216
            ++K ++LEL+KE + L  KG  L+  D+ K  EL  Y   L+D   + S+KKYF I+ +FIN+K+T  +F
Sbjct:    5 FNKQKFLELIKEYKTLSLKGKYLFDFDKVKNDELTIYLTFLDDNTAYLSKKKYFQIIESFINQKITVNEF 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1691.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001EF9E67E9.860e-6264.58hypothetical protein n=1 Tax=Nitzschia traheaformi... [more]
A0A516ZBK1_9STRA6.530e-3846.58Colicin_immun domain-containing protein n=1 Tax=Ha... [more]
A0A023JEE1_9STRA5.780e-541.43Uncharacterized protein n=1 Tax=Eunotia naegelii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1691contigP-littoralis_Contig1691:501..932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.7337275-CDS-P-littoralis_Contig1691:500..9321680789812.7337275-CDS-P-littoralis_Contig1691:500..932Pylaiella littoralis U1_48CDSP-littoralis_Contig1691 501..932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1691.1.1prot_P-littoralis_Contig1691.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1691 501..932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1691.1.1

>prot_P-littoralis_Contig1691.1.1 ID=prot_P-littoralis_Contig1691.1.1|Name=mRNA_P-littoralis_Contig1691.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MEYDKTRYLELLKESQNLEKKGLSLYREDEEKYLELLKYEIRLEDQKFWE
SRKKYFSIMNNFINEKLTGEDFDDLFTCLWREDRDRPIINYEPDIASKDF
GAWINKIFFVCEDFNFEPEAEKNEEYCEKWLKDHVIRLLIQMEK
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mRNA from alignment at P-littoralis_Contig1691:501..932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1691.1.1 ID=mRNA_P-littoralis_Contig1691.1.1|Name=mRNA_P-littoralis_Contig1691.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1691:501..932+ (Pylaiella littoralis U1_48)
ATGGAATACGATAAAACTCGATACTTAGAATTGCTTAAAGAATCCCAAAA
TTTAGAAAAGAAAGGTTTGTCTTTATATAGAGAAGATGAAGAAAAATATT
TGGAATTATTAAAATATGAAATACGACTAGAGGACCAAAAATTTTGGGAA
AGTAGAAAAAAATATTTTTCTATTATGAATAATTTCATTAACGAAAAACT
TACTGGTGAAGATTTCGATGATCTTTTTACGTGTCTCTGGAGAGAAGACC
GAGATAGGCCTATCATAAATTATGAACCGGATATAGCGTCCAAAGATTTT
GGTGCCTGGATAAACAAAATATTTTTTGTTTGTGAAGATTTTAATTTTGA
ACCCGAAGCTGAAAAAAATGAAGAATATTGTGAAAAATGGTTAAAAGATC
ACGTTATTCGTCTTTTAATACAAATGGAAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1691:501..932+

>mRNA_P-littoralis_Contig1691.1.1 ID=mRNA_P-littoralis_Contig1691.1.1|Name=mRNA_P-littoralis_Contig1691.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1691:501..932+ (Pylaiella littoralis U1_48)
ATGGAATACGATAAAACTCGATACTTAGAATTGCTTAAAGAATCCCAAAA
TTTAGAAAAGAAAGGTTTGTCTTTATATAGAGAAGATGAAGAAAAATATT
TGGAATTATTAAAATATGAAATACGACTAGAGGACCAAAAATTTTGGGAA
AGTAGAAAAAAATATTTTTCTATTATGAATAATTTCATTAACGAAAAACT
TACTGGTGAAGATTTCGATGATCTTTTTACGTGTCTCTGGAGAGAAGACC
GAGATAGGCCTATCATAAATTATGAACCGGATATAGCGTCCAAAGATTTT
GGTGCCTGGATAAACAAAATATTTTTTGTTTGTGAAGATTTTAATTTTGA
ACCCGAAGCTGAAAAAAATGAAGAATATTGTGAAAAATGGTTAAAAGATC
ACGTTATTCGTCTTTTAATACAAATGGAAAAA
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