mRNA_P-littoralis_Contig169.125.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.125.1
Unique NamemRNA_P-littoralis_Contig169.125.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: D7FLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ5_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 8.690e-78
Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 3 
Query:  198 RCLHMPVFIMGDDAKIHGYAAVKSESQEQLFRFLTGYRDRRARQGTVFELQWIFDDRCCRGAKDPTKYFGTRIFPSVQRAPLADAFHSIQNLAGATTSKDHPRKALFAKAIGSVVRSKHPPDVEAVVEYLMKGNKSMSRADAQHAAVSKRWSRYVRTDSRPAQQTIDELRSLVEMHARLDAEGRARGELPLLQPELPPGRRGPR 809
            +CL+   F+MG+DAKI GY AVKSES+E+L      Y DRR ++GT+  L+W++DDRCCRG KD TKY+G +IFP V+RAPLAD+FH+ QNLAGATTSK H R+ ++A+ +G  VRSK+ PDV+AVVEYLM+ NK M+RA+A+  A SK  SRYVRT SRP ++TI E+  +V +HARLDAEGR RGELPLLQPELPPG+RGPR
Sbjct:  423 QCLY---FLMGEDAKILGYGAVKSESEEELTLLFQRYADRRRKKGTLHALRWLYDDRCCRGCKDVTKYYGVQIFPHVERAPLADSFHATQNLAGATTSKSHERRGVYARGVGGSVRSKYKPDVDAVVEYLMRENKRMTRAEAERKAKSKSMSRYVRTVSRPIEETIAEVSEVVRLHARLDAEGRERGELPLLQPELPPGKRGPR 623
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: D8LRE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE7_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 2.640e-75
Identity = 127/204 (62.25%), Postives = 162/204 (79.41%), Query Frame = 3 
Query:  198 RCLHMPVFIMGDDAKIHGYAAVKSESQEQLFRFLTGYRDRRARQGTVFELQWIFDDRCCRGAKDPTKYFGTRIFPSVQRAPLADAFHSIQNLAGATTSKDHPRKALFAKAIGSVVRSKHPPDVEAVVEYLMKGNKSMSRADAQHAAVSKRWSRYVRTDSRPAQQTIDELRSLVEMHARLDAEGRARGELPLLQPELPPGRRGPR 809
            +CL+   F+MG+DAKI GY AVKSES+E+L      Y DRR ++GT+  L+W++DDRCCR  KD TKY+G +IFP V+RAPLAD+FH+ QNLAGATTSK H R+ ++A+ +G  VRSK+ PDV+A+VEYLM+ NK M+RA+A+  A SK  SRYVRT SRP ++TI E+  +V +HARLDAEGR RGELPLLQPELPPG+RGPR
Sbjct:  525 QCLY---FLMGEDAKILGYGAVKSESEEELTLLFQRYADRRRKKGTLHALRWLYDDRCCRVCKDVTKYYGVQIFPHVERAPLADSFHATQNLAGATTSKSHERRGVYARGVGGSVRSKYKPDVDAIVEYLMRENKRMTRAEAERKAESKSMSRYVRTVSRPIEETIAEVSEVVRLHARLDAEGRERGELPLLQPELPPGKRGPR 725
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: A0A6H5JZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ63_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.820e-36
Identity = 78/191 (40.84%), Postives = 110/191 (57.59%), Query Frame = 3 
Query:   66 RRLEYLLQGCLPTGQGQHASRDNWPGRWGVSEHGRHVQGRWE-GHRCLHMP---VFIMGDDAKIHGYAAVKSESQEQLFRFLTGYRDRRARQGTVFELQWIFDDRCCRGAKDPTKYFGTRIFPSVQRAPLADAFHSIQNLAGATTSKDHPRKALFAKAIGSVVRSKHPPDVEAVVEYLMKGNKSMSRADAQ 626
            R  ++ +  C      +H  R+     WG       + G W  G R +  P    F++G+DAK+H   AV+SE +E+++  L  Y +RR R GT+  L+W +DD CCRGA D TK +   IF  V R  LAD+FH  Q L GATTSK+HPRKA+FA  +G ++R+KH PDV+ V  YL +    MS  +A+
Sbjct:  278 RHTDHNVVFCRHPQDKEHMQREIHSQYWGQF---LCMDGTWRIGLRVIDSPDCLFFLLGEDAKVHAGGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWFYDDLCCRGADDVTKGWILDIFEGVMRRALADSFHFGQTLVGATTSKNHPRKAVFAAGVGQILRTKHQPDVKVVAAYLKRVIPGMSEMEAE 465
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: A0A6H5KNQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.710e-14
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 3 
Query:  201 CLHMPVFIMGDDAKIHGYAAVKSESQEQLFRFLTGYRDRRARQGTVFELQWIFDDRCCRGAKDPTKYFGTRIFPSVQRAPLADAFH--SIQN 470
            CL+   F++G++AK+H Y A+ SES+ +L      Y DRR R GT+  LQ+++DD CC+ A D T+ +   IF  + RA L+D+FH   +QN
Sbjct:  113 CLY---FLLGENAKVHDYGAITSESKSELRPLFMRYADRRRRNGTLPTLQYLYDDMCCKNAVDVTEPWMKSIFTGLSRAALSDSFHFGQVQN 201
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: D8LRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.060e-13
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 3 
Query:  201 CLHMPVFIMGDDAKIHGYAAVKSESQEQLFRFLTGYRDRRARQGTVFELQWIFDDRCCRGAKDPTKYFGTRIFPSVQRAPLADAFHSI 464
            CL+    +M +DAKIH Y A+KSES+ +       Y +RR R GT+  LQWI DD CCRGAKD  +YF   IFP V    L    HSI
Sbjct:  367 CLYS---LMREDAKIHAYGALKSESKVETLPLYKRYAERRRRSGTLTTLQWIIDDLCCRGAKDVKQYFLMNIFPGVVGGHLG--MHSI 449
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: A0A6H5KHD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.400e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   16 WPSWKFKENTLLGTPSVAVLNTFYRAAYQQDKDNMLREIIGLGDGEFLNMDGTFKVAGKVTDASTCL 216
            WP WKF   TL+ TPS+AVLNT ++A +  DK++M REI     G+FL MDGT+++  +V D+  CL
Sbjct:   38 WPGWKFSRGTLISTPSIAVLNTIFKAGHDNDKEHMQREIHSQYGGQFLCMDGTWRIGLRVIDSPDCL 104
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.510e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   16 WPSWKFKENTLLGTPSVAVLNTFYRAAYQQDKDNMLREIIGLGDGEFLNMDGTFKVAGKVTDASTCL 216
            WP WKF   TL+ TPS+AVLNT Y+A +  DK++M REI     G+FL MDGT+++  +V D+  CL
Sbjct:   38 WPGWKFSRGTLISTPSIAVLNTIYKAGHDDDKEHMQREIHSQYGGQFLCMDGTWRIGLRVIDSPDCL 104
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BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Match: A0A6H5L4Z6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.820e-6
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 3 
Query:  606 MSRADAQHAAVSKRWSRYVRTDSRPAQQTIDELRSLVEMHARLDAEGRARGELPLLQPELPPGRRGP 806
            M   +A+  A  + WS +VRT SRPAQ+  D+L   V  + +LD    AR ELPLL+P+LPPG+ GP
Sbjct:    1 MLEMEAEVMAKKRAWSPFVRTYSRPAQEVEDDLVKYVGDYVKLDQAAIARKELPLLRPDLPPGKSGP 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FLQ5_ECTSI8.690e-7863.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRE7_ECTSI2.640e-7562.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ63_9PHAE1.820e-3640.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ6_9PHAE1.710e-1442.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRE6_ECTSI1.060e-1348.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHD6_9PHAE1.400e-1249.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE2.510e-1250.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4Z6_9PHAE9.820e-647.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:449920..451371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size809
Hectar predicted targeting categoryother localisation
Exons4
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.5911252-CDS-P-littoralis_Contig169:449919..4502611680789812.5911252-CDS-P-littoralis_Contig169:449919..450261Pylaiella littoralis U1_48CDSP-littoralis_Contig169 449920..450261 -
1680789812.6047177-CDS-P-littoralis_Contig169:450491..4506541680789812.6047177-CDS-P-littoralis_Contig169:450491..450654Pylaiella littoralis U1_48CDSP-littoralis_Contig169 450492..450654 -
1680789812.6162426-CDS-P-littoralis_Contig169:450941..4511401680789812.6162426-CDS-P-littoralis_Contig169:450941..451140Pylaiella littoralis U1_48CDSP-littoralis_Contig169 450942..451140 -
1680789812.6341739-CDS-P-littoralis_Contig169:451266..4513481680789812.6341739-CDS-P-littoralis_Contig169:451266..451348Pylaiella littoralis U1_48CDSP-littoralis_Contig169 451267..451348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789812.6447475-UTR-P-littoralis_Contig169:451348..4513711680789812.6447475-UTR-P-littoralis_Contig169:451348..451371Pylaiella littoralis U1_48UTRP-littoralis_Contig169 451349..451371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.125.1prot_P-littoralis_Contig169.125.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 449920..451348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.125.1

>prot_P-littoralis_Contig169.125.1 ID=prot_P-littoralis_Contig169.125.1|Name=mRNA_P-littoralis_Contig169.125.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp
MEVQGKHPVGDAFRRRLEYLLQGCLPTGQGQHASRDNWPGRWGVSEHGRH
VQGRWEGHRCLHMPVFIMGDDAKIHGYAAVKSESQEQLFRFLTGYRDRRA
RQGTVFELQWIFDDRCCRGAKDPTKYFGTRIFPSVQRAPLADAFHSIQNL
AGATTSKDHPRKALFAKAIGSVVRSKHPPDVEAVVEYLMKGNKSMSRADA
QHAAVSKRWSRYVRTDSRPAQQTIDELRSLVEMHARLDAEGRARGELPLL
QPELPPGRRGPR
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mRNA from alignment at P-littoralis_Contig169:449920..451371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.125.1 ID=mRNA_P-littoralis_Contig169.125.1|Name=mRNA_P-littoralis_Contig169.125.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1452bp|location=Sequence derived from alignment at P-littoralis_Contig169:449920..451371- (Pylaiella littoralis U1_48)
GGGCAGTTCACGAAGTGGCCGTCATGGAAGTTCAAGGAAAACACCCTGTT
GGGGACGCCTTCCGTCGCCGTCTTGAATACCTTCTACAGGGCTGCTTACC
AACAGGTCAGGAAGTAAGGCTTCGAACGGTGACGACGCCGAGGCCCTGTG
GTTCCGTACACGTTCCTCAAATCCTCTCTCGTTTCCTTGGAATGCCTGAA
CATTCATTTTTGCTTTTGAACTCGTACACAGGACAAGGACAACATGCTTC
GCGAGATAATTGGCCTGGGCGATGGGGAGTTTCTGAACATGGACGGCACG
TTCAAGGTCGCTGGGAAGGTCACAGATGCCTCCACATGCCTGTCTTCATC
ATGGGGGACGACGCCAAGATTCACGGGTATGCAGCTGTGAAGTCAGAGAG
CCAGGAGCAGCTTTTTCGCTTTCTCACGGGGTACGTGCCGTTTCACTTAG
TTTATGATACACCAGCAGCACATCGGTAAGTAGAGCCTCATGTGTATTCG
CGTGTATTGTTTGTTCAGAGAAACAGCGAGGGAGAGAAAGTAACGTCCAC
GGATGTCCACGGTAGGTTTCATCCGCGTTCTTTGATCTTCTTGCGGCCGT
TCGTGTACTAGGCTTGGGCCGGGCGAAGTAACAGATGCTCCCATGGCATG
TGCAGCGACAACAGCACGAATTGAAGCGTCGCTCCAATTTTTGTTGCAAA
AACTCAAACGCCCATAGGTATCGAGACAGGAGAGCGAGACAGGGCACGGT
CTTCGAGTTGCAGTGGATATTCGATGACCGCTGCTGCAGAGGAGCCAAAG
ATCCAACAAAGTACTTCGGAACCCGCATCTTCCCTTCAGTGCAGCGAGCT
CCACTTGCCGACGCCTTTCACTCGATTCAGGTGCAGCGAACGCGAGAAGG
ACAATCCTCCTTCCCTGTTGCCGACTCTCAGCCTTTTCCTCTAGATCCCG
TCTTCGTATACCGTGGACAGAATGCGCCGAACACAAAACCCGTGTCCCGC
GTCTGTGTACAACGTGTGCCTGCATCCCATCCGTTTCGCGCACAATTATT
TACTCATCTCCCTTCGATGTTGCCTCACCGACCGCTTTGTCGTCACCATC
TCCTTTGCAGAATCTGGCGGGCGCGACCACGTCGAAGGACCACCCACGAA
AGGCCCTCTTTGCGAAGGCGATTGGGAGCGTTGTGCGCTCCAAACACCCG
CCCGATGTGGAAGCCGTTGTGGAGTACTTGATGAAGGGCAACAAGAGCAT
GTCAAGGGCGGATGCACAACACGCCGCTGTTTCCAAGCGTTGGTCACGTT
ACGTACGGACCGATTCTCGCCCCGCACAACAGACGATCGATGAGCTTCGG
AGTCTGGTGGAGATGCACGCACGACTGGACGCGGAAGGCCGGGCGAGGGG
TGAGCTGCCTCTGCTACAACCGGAGTTGCCGCCGGGGAGAAGAGGGCCGC
GC
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Coding sequence (CDS) from alignment at P-littoralis_Contig169:449920..451371-

>mRNA_P-littoralis_Contig169.125.1 ID=mRNA_P-littoralis_Contig169.125.1|Name=mRNA_P-littoralis_Contig169.125.1|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig169:449920..451371- (Pylaiella littoralis U1_48)
ATGGAAGTTCAAGGAAAACACCCTGTTGGGGACGCCTTCCGTCGCCGTCT
TGAATACCTTCTACAGGGCTGCTTACCAACAGGACAAGGACAACATGCTT
CGCGAGATAATTGGCCTGGGCGATGGGGAGTTTCTGAACATGGACGGCAC
GTTCAAGGTCGCTGGGAAGGTCACAGATGCCTCCACATGCCTGTCTTCAT
CATGGGGGACGACGCCAAGATTCACGGGTATGCAGCTGTGAAGTCAGAGA
GCCAGGAGCAGCTTTTTCGCTTTCTCACGGGGTATCGAGACAGGAGAGCG
AGACAGGGCACGGTCTTCGAGTTGCAGTGGATATTCGATGACCGCTGCTG
CAGAGGAGCCAAAGATCCAACAAAGTACTTCGGAACCCGCATCTTCCCTT
CAGTGCAGCGAGCTCCACTTGCCGACGCCTTTCACTCGATTCAGAATCTG
GCGGGCGCGACCACGTCGAAGGACCACCCACGAAAGGCCCTCTTTGCGAA
GGCGATTGGGAGCGTTGTGCGCTCCAAACACCCGCCCGATGTGGAAGCCG
TTGTGGAGTACTTGATGAAGGGCAACAAGAGCATGTCAAGGGCGGATGCA
CAACACGCCGCTGTTTCCAAGCGTTGGTCACGTTACGTACGGACCGATTC
TCGCCCCGCACAACAGACGATCGATGAGCTTCGGAGTCTGGTGGAGATGC
ACGCACGACTGGACGCGGAAGGCCGGGCGAGGGGTGAGCTGCCTCTGCTA
CAACCGGAGTTGCCGCCGGGGAGAAGAGGGCCGCGC
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