mRNA_P-littoralis_Contig169.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.24.1
Unique NamemRNA_P-littoralis_Contig169.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:138670..146292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size379
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_000940.1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789811.2941074-UTR-P-littoralis_Contig169:138669..1386821680789811.2941074-UTR-P-littoralis_Contig169:138669..138682Pylaiella littoralis U1_48UTRP-littoralis_Contig169 138670..138682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789811.3047628-CDS-P-littoralis_Contig169:138682..1387691680789811.3047628-CDS-P-littoralis_Contig169:138682..138769Pylaiella littoralis U1_48CDSP-littoralis_Contig169 138683..138769 +
1680789811.3141525-CDS-P-littoralis_Contig169:144967..1451081680789811.3141525-CDS-P-littoralis_Contig169:144967..145108Pylaiella littoralis U1_48CDSP-littoralis_Contig169 144968..145108 +
1680789811.3280206-CDS-P-littoralis_Contig169:146154..1462921680789811.3280206-CDS-P-littoralis_Contig169:146154..146292Pylaiella littoralis U1_48CDSP-littoralis_Contig169 146155..146292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.24.1prot_P-littoralis_Contig169.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 138683..146292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.24.1

>prot_P-littoralis_Contig169.24.1 ID=prot_P-littoralis_Contig169.24.1|Name=mRNA_P-littoralis_Contig169.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MAAMFADVSPTSRRLRDGSGLEVNVKAMEKRLASLAGDKTGGGGWKPADG
IPPRPNGGGSRSVEKSSATADGAHRPRLSRKLSTGSMQVLSSMTQLPGRL
KSAIVKKKRGHPGAPPRGIKK*
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mRNA from alignment at P-littoralis_Contig169:138670..146292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.24.1 ID=mRNA_P-littoralis_Contig169.24.1|Name=mRNA_P-littoralis_Contig169.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7623bp|location=Sequence derived from alignment at P-littoralis_Contig169:138670..146292+ (Pylaiella littoralis U1_48)
CCGGACAGCAGCAATGGCCGCAATGTTCGCCGACGTTTCACCTACAAGCA
GGAGACTTCGCGACGGTTCGGGTCTGGAGGTGAATGTCAAGGCGATGGAG
GTGAGATATTGTTGTTGTATTGCTGTGTGTGGCGTTTGTTCTCTGTTCTG
TGTTGTTGGTGTTGTTGGTGTTGTCGCTGCTCCTCCTGCTATATTATTGT
TGTCGGGGCTGTTCGTGCTGCTGCCGTTGCTGCTGTGGTTGCTGCGGACA
GTCCCGCTGACAGTCCCGTAGAAACTGCAACCAATGCGTTTTGGACGTTT
GGCTACTGCAATCCCACGAAGGGTAGTGAATGAGTGAATCACTTCGATGG
GATTGTATTTTCCCGATTTGTCACGAGAATGGGGCGTATCAACAAGCCGC
CGTCTCTCGGAAATCTCCAGAACCCAGGGGATCGACCGCGTCCCTCGAAC
TATTTTATCTGTAAGAAACAAAAAAAAAACAGTTTGGAAACGTTTCTGAA
AGCCGTACAAGTGCGACTGCTCTACTGTAGTACTACTTTACACGCCGTTC
GTAGGGTCTGGAAGGTGAACAAAAACCTCTTCCAAGAATATTCCTGTGAG
CCTTACAAAGGATTCCATTCCCAAATCTCGAGGATAAACTGCAGTATCAT
CACATGGATAATTGAGAGTATGTGTCGACCGACTGCTACATATTTCGTAT
ATTTCGTATGATATATTTATAAAAGTCACTAACAGCCCACTCCCGATCTA
CATAGATTCCCGCGGCTGTCCGGCGCGCCAGCGAAATCTGTAGACTAAGG
CTGTTTTTTACGGTCGACATTATTTTGGTCTGGCGTTTTGACCCCCCTAC
TCAAATCCAACCAGAGAACCCTCACACCCGTCAACAGCCCTGTCGGACAC
ATCATGCGACAGCACCAACCAGAACTCGACCCCTGGGACGCAGATACAGA
TCAAACCTGATGGAGCGTGTGCTCCTTTAGTCTCAAGTTGCCCACAGGAA
GTTTGGTGGCGCAGTGGGTGCGGGCTGTGGCGAGATTTTGGCGGCGGTGT
GTGTTTGAGTTCGAAAAACAGATGAAACGAAACAACAGACTTTGCTCCCG
TTTTTCCGGCCAAGAACAGGCTCGAACAGTGTTTTTTGTTTCACCGGATT
TTCCCACCTCAACCCACCCCGCCGCCGAAACATCGCCACAGCCAAAGCCC
ACACCCAACAAATTTCCTGTGGCCAACATGAGAACACTGGAGCGTACCCT
CCAGCAGTTTTAGTCTCGATTGATGTCCCAGGGGTCGAGTTCTGCTTGGT
GCTGTCTCCTATTGTGCTCCAGATGTAGCTTATCAAACCGTTTAGGCCCT
CTGTTATTTGGGGGGGGTACCTCAGGAGAAAAAACACAGGACCAAATAAC
AGAGCCGTAAGAAACGATCTGAGGTTGGCCCTCATTCGTGGACATACTGG
GCCGATTGGCAATCACAAACCCCCCGCCCGCCCGCGCGGAAAAAGTTGAA
AGATGCCGCAAGCCATTCACTCATAAGGAAACATACACCATTCGTTGTTG
AACCCCGTTCAGCGAAATAAAAAGACGCTTTCTTTCCCCGAAACAACCCC
CTTTTTTCACGAGTTGCGTCCGATTTGCGCACATTTATGTAGAGACAGTC
TTGCCGCCGACGTACGCACAATGTCTGGTACGCTCAACATTGACCACGCG
ACCCAACAATGCCTTCCTACAGAGCCCAAGGGAATGTAAAATAAAAGAAA
GGAAAATCCCCCAAACCCCATTTTCTCACCCCACTTAGTTGGGGCGTTGG
GCGAGAAAAAGGGCTTTGGAGAAAAAAGCAAACTGCTGTAAACCGGCCTT
TAGCGCACAATATAGCCCAATGGTTGGCTATTCGGTGGTGACTTCTATGC
TGTTTTAAGATTTACAGGAGAGGCGGCGCCCCATCCTCCAAAAGTAAGCA
ATATCGCCCTCCCCCCTTGTTTGGGGTACACGGTACTCGATTCGTATCAT
GTGGAACTCTGGGGATGTGTGTGGTGTATAAGTGTATGGCGGGGCCCCTG
GCTGGGCTACACCGCTGTATGCTCACTCGTTAAGAATAAAGGTCTTGAGT
CAACCTTCTTTCCTCCTTCGGCCTCTGACGAAGATTTCGGCACCAAACAC
GATTATCGTAGGCCTGTGTCGCGGCGGGGTATTGGCGTTGGAGTTGTCGT
GGAACCGTGGTCCGGGCGGTGGAACGATATTTTTGGGTTAAAGCTGGGAC
GGCACTTCGAGAGGTCGGGACAGCGGTGGGTTTTGGATTTGTAGCTGGGA
CGGCACTTCGAGAGGTCGGGACAGCGGTGGGTTTATAGCTGGGACGGCAC
TTCGAGAGGTCGGGACAGCGGTGAGTTTATAGCTGGGACGGCACTTCGAG
AGGTCGGGACAGCGGTGGGTATATAGCTGGGACGGCACTTCGAGAGGCCG
GGACAGCGGAGGTTTTATAGCTGGGACAGTACTACGAGAGACTGGGACAG
CGGGGTAGGGGTTTTATTTTCAAGGAGAGAGACACACAGCAGTTAGAGGA
CTGAGGAAGGTTGCGGCTATCGGCGGATGCAGCAACCAAGACGGCTGGTT
TCGACCGTTACTCTGTCATACGTGTGAGCGCATCCATGGTGCGACAGCAA
GGTGCGAGTGTTGGACCTGCGTACGTTGATAGCCCATGCGGTGGAATGAA
TGCGATGCTACTCGCCGTCCGGACCGGGGGTCCGCTACACTTTGAACGAT
CTCTGCACCGGTCGCACTTACACAGGTCTGCTGATGCGTGAAAGAGCGGA
TCTTCTCCAATTCCTGATCCATCAGTACCACTGCGTAGACTGGACTTGCA
ACAAGCCTCGAGTGCAGGATCCGGAGTGGGAAGGGATGTGGGCCAGCGAT
TGGCAAGGAAACTGGCAGCAGCTGGACGATTTCTGGCATCAAAATTTTCG
CACGCTCTTGTCGGATGTGGAGAAGGAAGTTTTTCTGCAGCTGCTTGATA
ACGAAAGAGCAACGGCGGGGCGCGCGGATGCGGCCAGACAGGGTTCGGCT
TCGGCGAGTCGGAACGAGACAGCAGTGACGCCCACAGCAGTAGTAGCAGA
CGAAATGGACTCAATGGCGGGCGGGTGTCTTTCGTGTGCGGTGGTTGTGG
CGCACGCGGCCAAGGACAAGGAAAACTCGGCCAAGCAGCCGGTGGTGGAG
CCATCACCATCGTGGGAGCAGCATTCGACGGCGACAGTGGCGGAATTACC
GTTGGAAGAGCCGGAAGTTCAGCAGCAGCAGATGGATCCGGTGGAGGAAG
TGGTGGTATCGCCTTTGGGGGGCGAGCCAACTGTGGACATCAAGTGGCAC
AAGGCAGGGCAGCAAAGCGAGACGTTGGTCTTGGGGGAGGACCACTGTGT
CATGTTGGAGGTCAGCAACTGCTGGTGTGCGGAGACAGTTGCGTCTCCAA
CTGTTGGAGACGACAGCAGCAGTAGCAGCAGCAGCAACGACAGCGGTGGA
GACAGGGACGACGAGTGGTGGAACGTCAAATGGGGGAGTGCACCAACGCA
CCCTCTTCGACCCGGGCAAGAGTTCCTCGAGCTTCGCGGAAGAGGAAGGG
AGGTCCTCGGGGTGACGCACCCGTTCGATCGCGGCAAAAGGTTTGCGCCG
TGTGCAGCATGGAGGGTGATGGGCTTCGTGCCGGGGGGCGGTGGATTCGG
CAGAACGAGAACTACAGCAGCGTGCCGCAGCTAAGGTTTTGATACCTGTT
CAGGCATGTTACGCTTGCGTACAAACTTGTTTTTAATTTGATTTTGTGCG
GTTCATCTGTGATATTCCTGAATTATTGTGACATTTCCGACATGATGTTT
GATTTTGGTGCTTTCTAACTTATGGTTTGTTTTTTTTTCGCGCGTGTAGA
GACAAAAAATTCGAAGGTTTGAGGCTGACAGCAGCTGTGTTGTTTGGCAG
CACCGTACATCCGTGATTGTATGTTTTTGACGGAATATTGCAAACGTTTG
GCGCAGGGTGGATGTGTGTTTCTGGTTTTATTTCCAACACAATTTGCAGC
GTTTTAAGCGTTGTCCATGTGCGCAGAGTAGAAGAGCAATATTTGTTTAG
TGGCTGTGTACAAGCTAAGCTGTTGCTGATCGTGTACACGGTTTTGGTGT
TGTTTTGGTCTGGATCATGATGTTGGTTTTTGTTTTGTGTGATTGCTTCT
ATTCAGCATGCAGAATTTCATGATGTACACATGCACTGACTGTACTGCAG
TCGAGAATCAGGGGGGGGGATTTGTGTTCCATGATTCTCGCCGCAGTGTA
TCAGCAGAGTTTTGGTCGATTTGTGATTTGGTTTTGGTGTTGATTGGTTT
CTTCCCTGAAATCTGAAGGGAAATTGTGTTCTGGTTTTAACTTGCAGTAT
CTCTGATTGTGTTGCGGGACTGACTGCAAACAGGCACATATTTGTTTCAT
GTTCTGAAGGGATGCCTCAGCAGGGGGGCTGTTGGGCACTGGTTTGTGTG
TAAGATATTGAAGCTGCAGTCGCATCGATGAAGGTTTTTGCTTGACGCCT
GTTGTCGTCGTATACGTTGAGATTTTACTTCGCCGGTTCGCTGATTTTGC
TTTTTATGATGTATTTTGGAGGAAGGATTTGACATGTTTTGATGAAGTAT
GGTTGAAGCCTTCGTGCTTCCGAAGCTTATTTGAATTGGTCAAAACGTTG
AACACTGGTTTCGTTTGAGGAATTTGTTCGGATGAATTGAGCCATTTTTG
CGGAATAGTACGACCGTTTGATCACCGGTTGGTTGGTGGAATAACATCTC
TGTTTGCGTATTCTGCTCTATTTCAATAGAGTGTTGATTTTTGTGGGGGT
AATTTCCGAGGGTGTTTCTGGTATTTTGACGGCTTGGGAACATATGGGAA
CGCGAGGTCGCGGTTCGTGGATACCATTTTCTCGAGAGGGTTTCAATTGT
CTGTTGACGGACCTTTCGCAGGGGATATTGATTTGACATCAGAAGATTCG
GAAGACGTTTTGGATCGGAATGATTGATGATTTGAAAGTGTGTGAGGTTT
GGATTCATTGCCGTTTTACCTGGCGATGAAGATATGAGAGGAGTTCTGCA
AATCGTATCGAGCACCGAGTAGGGGGGCTGTTTGGGGTACACGGTACTCG
ATTCGTATTATGTGGAACTCTGGGGATGTGTGTGGTGTATAAGTGTATGG
CGGGGCCCCTGGCTGGGCTACACCGCTGTATGCTCACTCGTTAAGAATAA
AGGTCTTGAGTCAACCTTCTTTCCTCCTTCGGCCTCTGACGAAGATTTCG
GCACCAAACACTCCTAGCCGATTTCGACCCTCCCCTCCCCCCCAAAAATA
AAATAAATGTCCCAAAAAAATTGCTAAAACGTCTAAACCCTACTACAATA
TCACGCTTAAATAAAGTATTACTCGTAGTTGTTTATTTTCTTACAATATA
GAATTTACTAATACGTAGACTATAGTTCTAAATTTAATTTCAATCAAATC
TTAAGAGGGTCAGATGCTACCCGTACATCATTTCGTCTAAATAGGAGAAG
CACGGGTGCTCTTTCACGAAAGGGAAGATGGATGCGTGTCAGTCAGGAAT
GGTGCAACACCAAGGGCGAGGAGAAAGATGATTTCACCACCCCCCTCACA
TGCTAGGCCTGTTTACACTCTTATAGAGGACCTTTGTGTCGGAAGGAAGT
TCGACCATCAGCTCCGTACGTGCACTAACGTGGACAAACACACCTACCCA
CCATCCCAACCCAACCCACCCCATCCCTCACGACCGACCAAGGAGGGTCG
TGGTGGGCACGACCGCGGTGTGTTCCAGGCACACATGAGGTTTTGACCAA
TCAGAGGCCGTCAAACCGCCTTAGAAAGGACGATCCTCCAACAAAGTGTA
AATACTACTGCCACATGCTGCTCTATTTCGTGTAGGAGTAGAAACGGTGG
TTCGGTCCTCGAGTAGGATGGAAGGATGGACGCGCGGTCAATGACCCGAG
TCAATGACCCCTGATGGTCGCAAGCGACGAATTTTTTCGCCCCTACCCCC
CTATGCTAAACAAGGTGTACTTCCCCCTCTCCCCCGAACTATGTTCAATA
TTCGACCAGTGCCCCCCTCCCCCGCCCTGGATACGATATCCAGCCAATAC
CCAATGCCATCCCCCCTGAATACCATGTTTGACCAGTACCCCCCACCCGC
CCCTTGCGCACGCTACCAAGCGACAAATAAGGAACCCCCACCCCTCCCCT
CCGTCACTGGCTTGTGCACACGCAAAAACTGTAACCGGTGCAATGTAGAA
GAGGCTAGCTAGTTTAGCGGGGGACAAGACCGGAGGAGGCGGATGGAAGC
CTGCGGATGGGATCCCCCCGCGTCCAAACGGCGGCGGCAGCAGAAGCGTG
GAAAAAAGTTCGGCAACCGCTGACGGCGCCCATAGACCGGTACGGTTTCG
TTAACAACGCAGCAGCGATGCGTGATTAGACGTTGGCGTATCATATGTAG
ACGGCCTATTTCTCCAGATTTTATTGGGTCGGTCTCCCGCGTGTAAGTCA
TACAGGTTAATCGGAATTGTTGTTGTCGGTATATTGGCAAAGGCACAGCA
ATGAGTCCCCGCGGGTGCATCGCTAAATCGTGTGTGTGTGCTATCAGAGG
TTTTTGTTGGTAAATTGCAAAAACGTACAGCAGTGATCTCCCAGACACAC
AAATTTATGTGCTACAGGTTCAATGGAGTTTTTGTTAGGATTGGCGAACG
TACAGCAGTGATCTCCCAACGAACGGTAACGCTTGTGACTGCCAGAGGTT
TCAGTTGGTGTAGTGGCAAACGCACACTAGTAGTGATCACCCGCAGAGGA
AAGTCGTATGCTCTCAGAGTTTTTTGTCGGTGTTGGCAAAGGCACAGCGT
ACCCACGGGTAAAAACAAAATCAATTCTGCAAGTTGTTGTACAAACAAAC
TGAATCCTGTTGTGTACCACGTGGAGATTCTTGTTCGGTGTGTGCTGCTG
TCCAAAAGAAGGTTGCTCGTTCGTCCGCAGCGTGTGTGTGTGTGTGCGGT
TGCGCGCTCTGTTCTTTAAATAAGTGGAAACACGACGCACCGGTAACTGT
GCGCACGCTTACTAGTGATAACTGTGTCGGGGGTCGTGCGGGCGTCCTCA
TCCGCAAGAATATTGTAACACTACTCCGCACCCTCTCTATAAGTATTCAT
GGTGTGCATGTGAATGATTGTGTGCCTGCATCCAGTCGTTGAGCAAGGAA
GTCCCGTTCGCGGAGCATGCAGGGATCCCTACATGTCCTCGACACTACTG
CTGCAACACTAAGCCCGAACCCTGATTCACATTGTAGAACGGTGTGCGTG
TGTGCATGCGTATCTGTATGAGTGTGCGTAGTGGTTGAGCCAGAAACTCG
TTTTGGGTAGCATGCAGGTATCGCAAACCCTAACCCCAGCCCTACCCTCT
ATCCCAACTACTGAACACGTGGGTGTCGTGTCTAGCGGTTGAGCCGCAAG
CTTTCAACAGGGAGCATGCAGGTTTTGTCGTCGATGACGCAGTTGCCCGG
AAGACTGAAGAGTGCCATCGTCAAGAAAAAACGCGGACATCCCGGAGCAC
CACCCAGAGGTATAAAAAAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig169:138670..146292+

>mRNA_P-littoralis_Contig169.24.1 ID=mRNA_P-littoralis_Contig169.24.1|Name=mRNA_P-littoralis_Contig169.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig169:138670..146292+ (Pylaiella littoralis U1_48)
ATGGCCGCAATGTTCGCCGACGTTTCACCTACAAGCAGGAGACTTCGCGA
CGGTTCGGGTCTGGAGGTGAATGTCAAGGCGATGGAGAAGAGGCTAGCTA
GTTTAGCGGGGGACAAGACCGGAGGAGGCGGATGGAAGCCTGCGGATGGG
ATCCCCCCGCGTCCAAACGGCGGCGGCAGCAGAAGCGTGGAAAAAAGTTC
GGCAACCGCTGACGGCGCCCATAGACCGCGGTTGAGCCGCAAGCTTTCAA
CAGGGAGCATGCAGGTTTTGTCGTCGATGACGCAGTTGCCCGGAAGACTG
AAGAGTGCCATCGTCAAGAAAAAACGCGGACATCCCGGAGCACCACCCAG
AGGTATAAAAAAATGA
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