mRNA_P-littoralis_Contig169.118.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.118.2
Unique NamemRNA_P-littoralis_Contig169.118.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.118.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:440293..441529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size358
Hectar predicted targeting categoryother localisation
Exons3
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.363328-CDS-P-littoralis_Contig169:440293..4403741680789810.363328-CDS-P-littoralis_Contig169:440293..440374Pylaiella littoralis U1_48CDSP-littoralis_Contig169 440294..440374 -
1680789810.3787017-CDS-P-littoralis_Contig169:440554..4407461680789810.3787017-CDS-P-littoralis_Contig169:440554..440746Pylaiella littoralis U1_48CDSP-littoralis_Contig169 440555..440746 -
1680789810.3882806-CDS-P-littoralis_Contig169:441445..4415291680789810.3882806-CDS-P-littoralis_Contig169:441445..441529Pylaiella littoralis U1_48CDSP-littoralis_Contig169 441446..441529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.118.2prot_P-littoralis_Contig169.118.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 440294..441529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.118.2

>prot_P-littoralis_Contig169.118.2 ID=prot_P-littoralis_Contig169.118.2|Name=mRNA_P-littoralis_Contig169.118.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
TPTAVRGTPRRAQVLLRPSWGRASKVLATEMTSRADLEENCREFLSKVEQ
RVQALVQDRDGGLDAVECEGLRTLAWNFADPLRGKPKNPILPGYSGPLAA
PSCRDELTGRLLSGANPED
back to top

mRNA from alignment at P-littoralis_Contig169:440293..441529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.118.2 ID=mRNA_P-littoralis_Contig169.118.2|Name=mRNA_P-littoralis_Contig169.118.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1237bp|location=Sequence derived from alignment at P-littoralis_Contig169:440293..441529- (Pylaiella littoralis U1_48)
ACGCCGACAGCAGTGCGTGGTACGCCACGGAGGGCACAGGTGCTGCTGAG
GCCATCCTGGGGGCGAGCGTCGAAGGTTCTTGCTGTGAGTGTTGCAGGGA
GTCGGACTGGCAGCACTCTGTTGGCTGGAGAACGTCGCGCTGCAGAGTCG
CTGCAGAGTGTGTGCCTGCTGCTGTTGTTGGATGCAGATGTATGTGTGCA
CAGGTGTGCAGCTGCGCAGTACAAGTATTGAGAGATTGTCGGGTATGATT
GCTACTGCTGTGCAACGTCTTTCCCAGATTGCAGCAGCGATATACCTGTG
CCAATAATACCAAAGGTGCAACCTCCTGGTTGCTGCTTGCTTTGGCTGTT
CCCTGCAACGGGTGCTGTGTCGCAGTGCGTACCACAGAGACATGAAGCGG
TTCAATACGAACACATGACACACAGCCGTGCCATGCTGCTGGTTGCTGCT
GCAGCAAGTGAGTACATTCTGTACATTATGTACAGCAGTACACAGACGAT
CGAACTGCCCTGCCTGATACATACTCCGAGTATCCATCAGCACGTGCATA
CAGCACTGCTGTGTCGTAGACTGCCCTCCTGCCTTATACTTACCCAAATA
AATCCACGTACAAGTACCAAGCCCGTGACGTACATGCGTTCCTCCTGCTT
TCCATGTTGCTGACGGGGGCGGCGCAGGCTACTTAGTGTAGCCCACTTGC
TGTGTGTTTGTTATTTGAACGTTGTGAAACGTGTACTTTAAACGTTTGCT
CCGTCCGTCCGTGATGCTCAAATGTGTAAACAGACTGAGATGACATCCCG
CGCGGATCTGGAGGAAAACTGTAGGGAGTTTTTGTCGAAAGTTGAGCAGC
GTGTACAGGCACTCGTACAAGACAGAGACGGCGGCCTGGATGCAGTCGAA
TGTGAAGGGCTTCGCACGCTTGCATGGAACTTTGCCGATCCTCTCCGCGG
GAAACCGAAGAACCCAATCCTACCGGTGAGAAATGCCGTCTATACTCAGA
CGCTGGTGGGTTCGTCCAGAATCTGTGTACGCTGCCGAATGACAACCATG
CGCTTGCCGACTTACGAGATGTGTGGGGTGAATGAGTACTTGATCGTCAG
AGCAAGAAACTCCAACATAGAGGGCCGCCATTTCATTTTTTCTTTGTTTG
CTCAGGGGTATTCGGGTCCACTCGCTGCACCGTCATGTCGCGATGAACTC
ACGGGACGGCTGCTGTCCGGGGCCAACCCAGAGGATG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig169:440293..441529-

>mRNA_P-littoralis_Contig169.118.2 ID=mRNA_P-littoralis_Contig169.118.2|Name=mRNA_P-littoralis_Contig169.118.2|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig169:440293..441529- (Pylaiella littoralis U1_48)
ACGCCGACAGCAGTGCGTGGTACGCCACGGAGGGCACAGGTGCTGCTGAG
GCCATCCTGGGGGCGAGCGTCGAAGGTTCTTGCTACTGAGATGACATCCC
GCGCGGATCTGGAGGAAAACTGTAGGGAGTTTTTGTCGAAAGTTGAGCAG
CGTGTACAGGCACTCGTACAAGACAGAGACGGCGGCCTGGATGCAGTCGA
ATGTGAAGGGCTTCGCACGCTTGCATGGAACTTTGCCGATCCTCTCCGCG
GGAAACCGAAGAACCCAATCCTACCGGGGTATTCGGGTCCACTCGCTGCA
CCGTCATGTCGCGATGAACTCACGGGACGGCTGCTGTCCGGGGCCAACCC
AGAGGAT
back to top