mRNA_P-littoralis_Contig1684.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1684.1.1
Unique NamemRNA_P-littoralis_Contig1684.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1684.1.1 vs. uniprot
Match: A0A6H5L3E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.510e-7
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:  306 AEQERFLQTTLQRMQQQQTQRPKAVEALWNLGRRPPPVEHQP 431
            AEQERFL+ TLQ+MQQQQTQRPK VEALW   R  PPVE +P
Sbjct:   68 AEQERFLRMTLQKMQQQQTQRPKVVEALWKTRRMSPPVEPRP 109
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BLAST of mRNA_P-littoralis_Contig1684.1.1 vs. uniprot
Match: A0A6H5JP68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP68_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.900e-6
Identity = 35/75 (46.67%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:   23 EDTTAADVAAAPAAPATPFDMVFAELHQRFLQ*QQQLDVVQEEQRQCQQRKSGTSYSSSPVWSNGDRSCYVCKKN 247
            EDTTAAD A APAAPA P DM FAELHQ FLQ         + Q+QCQQR+        P     D+     ++N
Sbjct:    2 EDTTAADAAVAPAAPAIPSDMFFAELHQLFLQ---------QRQQQCQQREERYQLQHQPGLERRDQELLYLQEN 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3E3_9PHAE6.510e-773.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP68_9PHAE1.900e-646.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1684contigP-littoralis_Contig1684:570..1123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size448
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.0386875-UTR-P-littoralis_Contig1684:569..6161680789810.0386875-UTR-P-littoralis_Contig1684:569..616Pylaiella littoralis U1_48UTRP-littoralis_Contig1684 570..616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.0498388-CDS-P-littoralis_Contig1684:616..6501680789810.0498388-CDS-P-littoralis_Contig1684:616..650Pylaiella littoralis U1_48CDSP-littoralis_Contig1684 617..650 -
1680789810.060045-CDS-P-littoralis_Contig1684:758..11231680789810.060045-CDS-P-littoralis_Contig1684:758..1123Pylaiella littoralis U1_48CDSP-littoralis_Contig1684 759..1123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1684.1.1prot_P-littoralis_Contig1684.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1684 617..1123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1684.1.1

>prot_P-littoralis_Contig1684.1.1 ID=prot_P-littoralis_Contig1684.1.1|Name=mRNA_P-littoralis_Contig1684.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
PRGARGEGGHHRRRRSRSSRRPRHPLRHGFCGAAPTFSTVTTAAGCGAGR
AAAVPAEEERHQLQQQPGLEQRGQELLCLQEKRCSSNTCNIAWRNSYSKT
SGRSKSVFCRRRFRECSSSRHSDRRQWRLCGI*
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mRNA from alignment at P-littoralis_Contig1684:570..1123-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1684.1.1 ID=mRNA_P-littoralis_Contig1684.1.1|Name=mRNA_P-littoralis_Contig1684.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=554bp|location=Sequence derived from alignment at P-littoralis_Contig1684:570..1123- (Pylaiella littoralis U1_48)
CCACGTGGAGCAAGAGGAGAAGGAGGACACCACCGCCGCCGACGTAGCCG
CAGCTCCCGCCGCCCCCGCCACCCCCTTCGACATGGTTTTTGCGGAGCTG
CACCAACGTTTTCTACAGTAACAACAGCAGCTGGATGTGGTGCAGGAAGA
GCAGCGGCAGTGCCAGCAGAGGAAGAGCGGCACCAGCTACAGCAGCAGCC
CGGTCTGGAGCAACGGGGACAGGAGCTGCTATGTCTGCAAGAAAAACGGT
GCAGCAGCAACACCTGCAACATCGCCTGGAGAAACAGCTACAGCAAGACC
AGCGGGCGGAGCAAGAGCGTTTTCTGCAGACGACGCTTCAGAGAATGCAG
CAGCAGCAGACACAGGTGCGTAGATGTCAATTTATTTCCTTATGAGAGAG
ACGTAATTCTTTCTTTGATACACATAGCTCGTTGACACCACTCCCCAATC
TTTCTTCCTCGTCGTTCAAGCAGCGACCGAAGGCAGTGGAGGCTCTGTGG
AATTTAGGGAGGAGGCCGCCGCCGGTGGAGCATCAGCCGCAGTCAGAGAG
AGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1684:570..1123-

>mRNA_P-littoralis_Contig1684.1.1 ID=mRNA_P-littoralis_Contig1684.1.1|Name=mRNA_P-littoralis_Contig1684.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1684:570..1123- (Pylaiella littoralis U1_48)
CCACGTGGAGCAAGAGGAGAAGGAGGACACCACCGCCGCCGACGTAGCCG
CAGCTCCCGCCGCCCCCGCCACCCCCTTCGACATGGTTTTTGCGGAGCTG
CACCAACGTTTTCTACAGTAACAACAGCAGCTGGATGTGGTGCAGGAAGA
GCAGCGGCAGTGCCAGCAGAGGAAGAGCGGCACCAGCTACAGCAGCAGCC
CGGTCTGGAGCAACGGGGACAGGAGCTGCTATGTCTGCAAGAAAAACGGT
GCAGCAGCAACACCTGCAACATCGCCTGGAGAAACAGCTACAGCAAGACC
AGCGGGCGGAGCAAGAGCGTTTTCTGCAGACGACGCTTCAGAGAATGCAG
CAGCAGCAGACACAGCGACCGAAGGCAGTGGAGGCTCTGTGGAATTTAG
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