mRNA_P-littoralis_Contig167.56.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: D7FZH9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH9_ECTSI) HSP 1 Score: 433 bits (1113), Expect = 2.780e-145 Identity = 211/323 (65.33%), Postives = 260/323 (80.50%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNGAEAETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDGISPVDEDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPEVCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLN-----MLCRNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKFITWKGVAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLLPD 966
F KVV+LAGDTRQL PVV NG EAET ASVLSS++YRD V +F L+KTMRN++DP +SKMVDDIGDG+S +DE G TI+GV+TE+ L+ AIDFVFP +VL +P AC+KR ++S HND+ +N VLAR+ +TL+GRT+LDH+HL+ D DD F MS++L+ ++ G+P+H INLN MLCRN+S+DD LTNGTKVVV+ I P+TL++QTLD + WLPRI F F+T +GVAVKRVQFPVRLCF +TVHRAQGQTLD+ C D TRHPFAHGHLYVGLSRVRKS D +ILTT+DR+D D FAKVHNVVFKSLL +
Sbjct: 328 FPGKVVVLAGDTRQLPPVVPNGGEAETTAASVLSSAYYRDNVEIFHLSKTMRNKDDPRYSKMVDDIGDGVSDIDEAGLITITGVRTEEALDVAIDFVFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARVNGETYTLQGRTMLDHKHLDPDVDDFFRMSQFLNQMEHSGVPSHDINLNVGVVVMLCRNLSIDDCLTNGTKVVVVAIQPFTLKLQTLDHGKMFWLPRIAFNFVTDQGVAVKRVQFPVRLCFCLTVHRAQGQTLDKTCIDLTRHPFAHGHLYVGLSRVRKSDDIIILTTSDRIDGDVFAKVHNVVFKSLLAE 650
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: A0A6H5KSD8_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD8_9PHAE) HSP 1 Score: 352 bits (902), Expect = 1.800e-114 Identity = 187/324 (57.72%), Postives = 225/324 (69.44%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNGAEAETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDGISPVDEDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPEVCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLNM-----LCRNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKFITWKGVAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLLPDV 969
F KV ++AGDTRQL PVV NG E+ET ASVLSS+FYRD V VF L TMRN++DP+FSKMVD IGDG +PVD DG T++GV T +LE AIDFVFP VL +P AC+KR ++S HND+ +N VL+R+ TL GRT+LDHE ++ D+ GIP+H I L + LCRNMS+D RLTNGTKVVV +I YTL+V+ L D GVAVKR+ FPVRL F +TVHRAQGQTLD+ CFD TRHPFAHGHLYVGLSRVRK+ D +ILTT DRV+D GFAKV+NV++ SLLP V
Sbjct: 283 FPKKVFVIAGDTRQLPPVVANGGESETTAASVLSSAFYRDNVDVFHLNTTMRNKDDPDFSKMVDAIGDGEAPVDADGLVTMTGVDTALSLESAIDFVFPYYVLQNPTACAKRGIISTHNDSVARVNAAVLSRVQGDMFTLRGRTMLDHEQMDPDS----------------GIPSHEIKLKVGVVVRLCRNMSIDARLTNGTKVVVQEIQSYTLRVKNLKD-----------------GVAVKRIHFPVRLWFCLTVHRAQGQTLDKTCFDLTRHPFAHGHLYVGLSRVRKADDVIILTTPDRVNDYGFAKVNNVLYNSLLPVV 573
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: D7FRZ0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ0_ECTSI) HSP 1 Score: 185 bits (470), Expect = 8.030e-55 Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1
Query: 163 MRNREDPEFSKMVDDIGDGISPVDEDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPEVCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLN-----MLCRNMSVDDRLTNGTKVVVLDINP 630
MRN++DP FSKMVDDIG+G+S +DE G TTI+GV+TE L+ IDF FP +VL +P AC+KR ++S HND+ +N VLAR+ TL+GRT+LDHEHL+ D DD F MS++L+ ++P +P+H INL +LCRN+S+DD LTNGTKVV+ NP
Sbjct: 1 MRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNP 161
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: UPI00103A3A51 (uncharacterized protein LOC114364057 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103A3A51) HSP 1 Score: 184 bits (468), Expect = 1.300e-48 Identity = 117/333 (35.14%), Postives = 186/333 (55.86%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNG-AEAETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDGISPVDE--------DGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIP-EVCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLNMLC-----RNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFK--FITWKGVAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLL 960
FG K+VI AGD RQ+ PVVV + ++ SV SS + +++ +F L+ + RNR+DPE+S + +G PV + S + +L + IDFVF V+ +P C+ RA+++ HN +IN+ VL R+ E+ H ++ +TD++F ++ L+ LQP G+P H + L + C RN+S DRL NGTKV+V+ P + V+ + +PRI FK + + R QFP+ LC+A+TVH++QGQT++R+ D F+HG LYV L RV++ +D IL + D++ D+ ++NVV+ LL
Sbjct: 755 FGGKIVIFAGDFRQIPPVVVRAKSNSDIINCSVKSSPIW-EQIKIFNLSTSQRNRDDPEYSDFLLKLGSNQLPVQTLKVNRSVLNLVDLTSHLSYVTDLNDLIDFVFSHVVIVEPDTCAGRAILTTHNQNVREINSIVLDRVESELLHFYSIDKVVSE-----NTDEIFLGADALNKLQPKGVPEHDLKLKVGCVCMIIRNLSFSDRLVNGTKVIVVKTTPRIIIVRKPGETNEFLIPRILFKAPIEPDSPIEMTRRQFPLALCYAMTVHKSQGQTINRVGVDLRSDVFSHGQLYVALGRVQEKSDIKILVSRDKLIDNKLL-LNNVVYPQLL 1080
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: UPI001ED89BAA (ATP-dependent DNA helicase PIF1-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89BAA) HSP 1 Score: 178 bits (451), Expect = 1.170e-47 Identity = 114/330 (34.55%), Postives = 182/330 (55.15%), Query Frame = 1
Query: 1 LHIGFGTKVVILAGDTRQLAPVVVNGAEAETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDGISPVDEDG-FTTI--SGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIP-EVCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLNMLC-----RNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKF-ITWKGVAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLL 960
+ FG KVV+LAGD RQ+ P++ +G++A+ AS+ SS + + +L +R+R+D +S+ V +G+ P G + TI + +L+E IDFV+P +VL +P C RA++S N +IN VL IP E+ + G D+ S+ L+ + G+P H + L + C RN+S +DRL NGTKV+V I+ ++ + + +PRI FKF ++ G+ + R QFP+++ + VT++++QGQTL+++ D F+HG LYV L RVR D +L T +RV +D A N+V K LL
Sbjct: 256 VEAAFGGKVVVLAGDFRQIPPIIPDGSKADIIGASLKSSELW-PIIIKKKLRSILRSRDDRAYSEFVLAVGEDRVPTVAMGEYQTIPLGSISFTTSLQELIDFVYPADVLSNPALCCNRAILSGTNHNISEINRFVLDMIPGEIVRLCSADST---PPCAGAVDNTLIHSDVLNAISHSGVPDHILELKVGCVAILIRNISFEDRLVNGTKVIVEKISRRFIEARIPNATDTVMIPRIPFKFAVSNSGIEMIRKQFPLKVAYGVTINKSQGQTLEKVGVDLRSDVFSHGQLYVALGRVRSVNDVKVLVTENRVSNDR-AHTINIVMKELL 580
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: UPI001E68D7A0 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E68D7A0) HSP 1 Score: 172 bits (436), Expect = 4.400e-47 Identity = 115/332 (34.64%), Postives = 184/332 (55.42%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNGAE-AETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDG-ISPVD------EDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPE-VCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLNMLC-----RNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKFITWKGVAVK--RVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLL 960
FG K++I AGD RQ+ PVVV+ ++ ASV SS ++ K+ F L + R R+D EFS+ + +G ++ V + +S + L++ IDFV+P +L +P C RA++S HN + +IN K+L +PE H +D E + + D +F + L+ +QP GIP H + L + C RN++ D+L NGTKV+V++ +P + V+ +PRI FK G ++ R QFP+++C+A+T+H++QGQT+ R+ D F+HG LYV LSR + + IL + +RV + G +NVV+ LL
Sbjct: 63 FGGKIIIFAGDYRQIPPVVVDAKHNSDVFNASVKSSPIWQ-KLKTFSLVTSQRCRDDSEFSEFLLKLGSNQLTSVTLHTNRTVENLVNLSMISFVSKLDDLIDFVYPNVILTEPDVCVHRAILSTHNASVYEINAKILELLPEDPLHFYS----ID-EVVSDNADQIFLGVDALNRMQPKGIPEHDLTLKVGCVCMIIRNLNFSDKLVNGTKVIVVNTSPRLITVRKPGLSDDYLIPRIIFKAPVEPGSPIEMCRRQFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRAQHRQNIKILISEERVIN-GNPLANNVVYPPLL 387
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: UPI001E688A66 (uncharacterized protein LOC123868181 n=2 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E688A66) HSP 1 Score: 172 bits (436), Expect = 2.560e-44 Identity = 115/332 (34.64%), Postives = 183/332 (55.12%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNGAE-AETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDG-ISPVD------EDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPE-VCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLNMLC-----RNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKFITWKGVAVK--RVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLL 960
FG K++I AGD RQ+ PVVV+ ++ ASV SS ++ K+ F L + R R+D EFS+ + +G ++ V + +S + L++ IDFV+P +L +P C RA++S HN + +IN K+L +PE H +D E + + D +F + L+ +QP GIP H + L + C RN++ D+L NGTKV+V++ +P + V+ +PRI FK G ++ R QFP+++C+A+T+H++QGQT+ R+ D F+HG LYV LSR + + IL +RV + G +NVV+ LL
Sbjct: 919 FGGKIIIFAGDYRQIPPVVVDAKHNSDVFNASVKSSPIWQ-KLKTFSLVTSQRCRDDSEFSEFLLKLGSNQLTSVTLHTNRTVENLVNLSMISFVSKLDDLIDFVYPNVILTEPDVCVHRAILSTHNASVYEINAKILELLPEDPLHFYS----ID-EVVSDNADQIFLGVDALNRMQPKGIPEHDLTLKVGCVCMVIRNLNFSDKLVNGTKVIVVNTSPRLITVRKPGLSDDYLIPRIIFKAPVEPGSPIEMCRRQFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRAQHRQNIKILVNEERVIN-GNPLANNVVYPPLL 1243
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: UPI001568188F (uncharacterized protein LOC117996074 n=2 Tax=Aphantopus hyperantus TaxID=2795564 RepID=UPI001568188F) HSP 1 Score: 171 bits (434), Expect = 5.090e-44 Identity = 116/332 (34.94%), Postives = 185/332 (55.72%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNG-AEAETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDG-ISPVD------EDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPE-VCHTLEGRTLLDHEHLEGDTDDVFCMSEYLSLLQPPGIPAHTINLNMLC-----RNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFK--FITWKGVAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLL 960
FG K++I AGD RQ+ PVVV+ + ++ ASV SS ++ K+ F L + R R+D EFS+ + +G ++ V + +S + L++ IDFV+P VL++P C RA++S HN + +IN K+L +PE H +D E + + D +F + L+ + P GIP H + L + C RN++ D+L NGTKV+V++ +P + V+ +PRI FK T + + R QFP+++C+A+T+H++QGQT+ R+ D F+HG LYV LSRV+ + IL +RV + G +NVV+ LL
Sbjct: 1478 FGGKIIIFAGDYRQIPPVVVHARSNSDVFNASVKSSPIWQ-KLKTFSLITSQRCRDDSEFSEFLLKLGSNQLTSVTLHTNRTVENLINLSIISFVLELDDLIDFVYPNVVLNEPDVCVHRAILSTHNASVYEINAKILELLPEDPLHFYS----ID-EVVSDNADQIFLGVDALNRMHPKGIPEHDLTLKVGCVCMIMRNLNFSDKLVNGTKVIVVNTSPRLITVRKPGLSDDYLIPRIIFKAPIETGSPIEMCRRQFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRVQHRQNIKILVNKERVIN-GNPLANNVVYPPLL 1802
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: A0A6H5J9S3_9PHAE (Herpes_Helicase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S3_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.560e-43 Identity = 79/138 (57.25%), Postives = 101/138 (73.19%), Query Frame = 1
Query: 556 MLCRNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKFITWKGVAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLLPDV 969
ML RN+ + + L N TK+VVL I +TL+ + L D +++PRITF FIT +GVAVKRVQFPVRLCFA+T+H++QGQTLD++ FD+ F HG LYV LSRVR + D IL RV DGFA+V NVV+KSLL +V
Sbjct: 1 MLTRNLDISNGLCNSTKLVVLHITNFTLRAKNLKDGVEHFIPRITFGFITRQGVAVKRVQFPVRLCFAITIHKSQGQTLDKVLFDNRTDVFMHGCLYVALSRVRAANDIRILVEPCRVSADGFARVLNVVYKSLLNNV 138
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Match: A0A6P8ZK23_THRPL (ATP-dependent DNA helicase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZK23_THRPL) HSP 1 Score: 168 bits (426), Expect = 4.720e-43 Identity = 107/333 (32.13%), Postives = 180/333 (54.05%), Query Frame = 1
Query: 13 FGTKVVILAGDTRQLAPVVVNGAEAETCTASVLSSSFYRDKVTVFRLTKTMRNREDPEFSKMVDDIGDGISPV-------DEDGFTTISGVQTEDNLEEAIDFVFPPEVLHDPMACSKRAVVSLHNDTEDDINNKVLARIPEVCHTLEG--RTLLDHEHLEGDTDDVFCMSEY-LSLLQPPGIPAHTINLNM-----LCRNMSVDDRLTNGTKVVVLDINPYTLQVQTLDDRTINWLPRITFKFITWKG--VAVKRVQFPVRLCFAVTVHRAQGQTLDRMCFDSTRHPFAHGHLYVGLSRVRKSADTLILTTTDRVDDDGFAKVHNVVFKSLL 960
FG K+++ +GD RQ+APVV A L SS + VF+LT R R ++S+ + +G+G P +++ + ++ L + ID ++P +L +P A ++RA+++ N IN+ +L H+L G LL ++ ++ + DD F + E L + G+P H + L + + RN+++++ L NGTKVVV ++P ++V+ +PRITFKF G + + R QFP++L +A++ H++QGQT++++ D F HG LYVGLSRVR D ++L DR+ D G A N+V+ +LL
Sbjct: 629 FGGKIILCSGDFRQIAPVVPRARCPSDVVAVSLRSSHLWEFFKVFKLTVPQRTRGSDDYSQYLLHVGNGTLPETTFGEGREQEKLVPLRSLRHMTTLHQLIDEIYPGHILSNPDAAAQRAILATLNTNIRAINDVIL-------HSLHGTLHELLSYDEVDKEADDGFDVDEETLHQTRAKGVPDHILKLKIGAVCFITRNLNIEEGLVNGTKVVVEAVSPRIVRVRKAGGNETFAIPRITFKFPIVDGAPLMINRRQFPLQLAYAMSFHKSQGQTINKVGVDLRTDCFTHGQLYVGLSRVRSPDDIVVLVPHDRIHD-GVAYTKNIVYHNLL 953 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig167.56.1 >prot_P-littoralis_Contig167.56.1 ID=prot_P-littoralis_Contig167.56.1|Name=mRNA_P-littoralis_Contig167.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=325bp LHIGFGTKVVILAGDTRQLAPVVVNGAEAETCTASVLSSSFYRDKVTVFRback to top mRNA from alignment at P-littoralis_Contig167:287910..288884- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig167.56.1 ID=mRNA_P-littoralis_Contig167.56.1|Name=mRNA_P-littoralis_Contig167.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig167:287910..288884- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig167:287910..288884- >mRNA_P-littoralis_Contig167.56.1 ID=mRNA_P-littoralis_Contig167.56.1|Name=mRNA_P-littoralis_Contig167.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig167:287910..288884- (Pylaiella littoralis U1_48)back to top |