mRNA_P-littoralis_Contig1023.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1023.15.1
Unique NamemRNA_P-littoralis_Contig1023.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.830e-14
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568
            ++P+ + YP+L++AC WS WSGNTPSEWK+L AS G      + DK            + T  NP+ SP AM                       A  K E +++++  K+KEN+AL  E   TRK+G+AAME  N
Sbjct:  285 DIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESAN 413
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BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.440e-13
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++ R+A  DKE     KET  T+KKG+AA+E  N
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAAN 233
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BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.070e-8
Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 2 
Query:  200 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568
            +PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++  +A  +KE     KE   T KKG+AA E  N
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAAN 251
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BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.620e-8
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +     D      NP+ SPA M+                      AA K E +  R+A  DKE +       +  KKG AA+E  N
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAAN 235
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BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.650e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 367
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G     K  D      NP+SSP
Sbjct:  117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
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BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.480e-8
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPA 370
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPA 162
[Close]
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.120e-7
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379
            E+ E W++P L+   A+SPWSG  PSEWK+L +S G     K  D      NP+ SPA M+
Sbjct:   31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FV02_ECTSI1.830e-1436.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGF1_9PHAE1.440e-1338.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE1.070e-835.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE5.620e-834.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE5.650e-847.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7S4_9PHAE8.480e-846.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVE3_9PHAE3.120e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1023contigP-littoralis_Contig1023:63956..64527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size572
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789362.5018704-UTR-P-littoralis_Contig1023:63955..639651680789362.5018704-UTR-P-littoralis_Contig1023:63955..63965Pylaiella littoralis U1_48UTRP-littoralis_Contig1023 63956..63965 -
1680789362.524992-UTR-P-littoralis_Contig1023:64328..645271680789362.524992-UTR-P-littoralis_Contig1023:64328..64527Pylaiella littoralis U1_48UTRP-littoralis_Contig1023 64329..64527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789362.5131724-CDS-P-littoralis_Contig1023:63965..643281680789362.5131724-CDS-P-littoralis_Contig1023:63965..64328Pylaiella littoralis U1_48CDSP-littoralis_Contig1023 63966..64328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1023.15.1prot_P-littoralis_Contig1023.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1023 63966..64328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1023.15.1

>prot_P-littoralis_Contig1023.15.1 ID=prot_P-littoralis_Contig1023.15.1|Name=mRNA_P-littoralis_Contig1023.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGS
NPLSSPAAMAAAASARKMLNNNGDSSSRRQTEAAAKAEADRLRRAQKDKE
NMALMKETEVTRKKGVAAME*
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mRNA from alignment at P-littoralis_Contig1023:63956..64527-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1023.15.1 ID=mRNA_P-littoralis_Contig1023.15.1|Name=mRNA_P-littoralis_Contig1023.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=572bp|location=Sequence derived from alignment at P-littoralis_Contig1023:63956..64527- (Pylaiella littoralis U1_48)
GACCTCAGGAAGTTCAAGGCAGGTCTGGGATTGTGCGGACGTGCTTGACG
GGTGCGATTTCATGGTCGATGTCGAGGAATAGAGGAAGGAGGATGTAGGC
GTTACCTCAAGCAGTGGCGTTGGCAGTGGATCAGCGGCGGGTCTCGTCAC
CGGTGGCAATGCTGGGACTGCGGGTAGTGCTAGGAAGAAGTTGCCGGAGA
TGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCC
CCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCGG
CGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCAA
ACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAA
ATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGC
AGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAGA
ACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGCA
GCCATGGAATAAATAAATGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1023:63956..64527-

>mRNA_P-littoralis_Contig1023.15.1 ID=mRNA_P-littoralis_Contig1023.15.1|Name=mRNA_P-littoralis_Contig1023.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig1023:63956..64527- (Pylaiella littoralis U1_48)
ATGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTC
CCCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCG
GCGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCA
AACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAA
AATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAG
CAGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAG
AACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGC
AGCCATGGAATAA
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