prot_P-littoralis_Contig978.2.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig978.2.2
Unique Nameprot_P-littoralis_Contig978.2.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length179
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig978.2.2 vs. uniprot
Match: D7FL92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL92_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 7.610e-67
Identity = 107/176 (60.80%), Postives = 135/176 (76.70%), Query Frame = 0 
Query:    3 GDHERKLPALKVFISQLNRSRQAVQTAHV--------MWLILLGVEFTRVWVQGVVVRVCPLERSFVVDDGTGTVTAIISGMGLDGSPDDAG-GDDSSIPDGFPEKGQHVLLVGAVEAPGDELQRRRQRQRQTSSCARYRILCDVFKNLGSESPNRDTLWGLEVVDFWRSRGRNSQ 169
            GD +RK+PA+K+F+SQLN +RQ V+ A V        + L+L+G+EFTRVWVQG+V+ V P ERSF+VDD TGTVTA++ G+GLDG  +DAG G      DG P+KGQHVL+VGAVEAP D+  + R+ QR+ SSC RYR+LCDV K++G ESPNRDTLWGLEV+DFW SR RN Q
Sbjct:    2 GDADRKIPAVKLFVSQLNSARQPVEAADVTGLEESNLVGLVLMGIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGIGLDGGTNDAGHGVRDGGADGLPKKGQHVLMVGAVEAPCDDNGQGRRVQRRRSSCRRYRVLCDVVKDVGPESPNRDTLWGLEVIDFWMSRPRNPQ 177
[Close]
BLAST of mRNA_P-littoralis_Contig978.2.2 vs. uniprot
Match: F0WZU2_9STRA (Uncharacterized protein AlNc14C442G11683 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZU2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.560e-5
Identity = 44/151 (29.14%), Postives = 68/151 (45.03%), Query Frame = 0 
Query:   13 KVFISQLNRSRQAVQTAHVMWLILLGVEFTRVWVQGVVVRVCPLERSFVVDDGTGTVTAIISGMGLDGSPDDAGGDDSSIPDGFPEKGQHVLLVGAVEAPGDELQRRRQRQRQTSSCARYRILCDVFKNLGSESPNRDTLWGLEVVDFWRS 163
            KVF+SQL+   Q      V      G   +RVW+QG+VV +       VVDDG+G +   +         D+A      I       G++ + +G +     E  R +   R  +     RIL     NL + S  R++LW LEV+++WR+
Sbjct:    8 KVFLSQLSACVQLDGNTKVN-----GKSISRVWIQGIVVWLTSESEECVVDDGSGLILIDLRHFRSIKPSDNA----YKI-----SLGEYWMFIGPLRPLTSEQIRLKDVMRMEN-----RILAHQVINLNAMSQQRESLWFLEVIEYWRN 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig978.2.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL92_ECTSI7.610e-6760.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0WZU2_9STRA2.560e-529.14Uncharacterized protein AlNc14C442G11683 n=1 Tax=A... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 10..159
e-value: 2.0E-12
score: 47.1
IPR032245RecQ-mediated genome instability protein 2PANTHERPTHR33962RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2coord: 7..162
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 7..163
e-value: 3.3E-16
score: 61.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig978contigP-littoralis_Contig978:5584..24447 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig978.2.2mRNA_P-littoralis_Contig978.2.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig978 3715..24522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig978.2.2 ID=prot_P-littoralis_Contig978.2.2|Name=mRNA_P-littoralis_Contig978.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
MEGDHERKLPALKVFISQLNRSRQAVQTAHVMWLILLGVEFTRVWVQGVV
VRVCPLERSFVVDDGTGTVTAIISGMGLDGSPDDAGGDDSSIPDGFPEKG
QHVLLVGAVEAPGDELQRRRQRQRQTSSCARYRILCDVFKNLGSESPNRD
TLWGLEVVDFWRSRGRNSQSSRGHARQV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032245RMI2
IPR012340NA-bd_OB-fold