prot_P-littoralis_Contig934.12.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig934.12.1
Unique Nameprot_P-littoralis_Contig934.12.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length129
Homology
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.010e-57
Identity = 100/127 (78.74%), Postives = 114/127 (89.76%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSDRISR 127
            ++ LDIEWEISAAGA  NPPATIQLAAGK VVIF+VLHGQR+VP ELPD LV+LLED KLTKTGVGIKGDCT+L++ YGVEV+  VDLRSLAVERKVE+GLRRGLADLCVHLLG+ LPKD + R+S+
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSK 379          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: UPI0011D1BD43 (Werner Syndrome-like exonuclease n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BD43)

HSP 1 Score: 80.9 bits (198), Expect = 3.890e-16
Identity = 55/128 (42.97%), Postives = 69/128 (53.91%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGL-RRGLADLCVHLLGRTLPKDSSDRISR 127
            V+GLDIEW  +    +V+P A +QL  G   +IF  LH +  VP  L   L  L    + T  GVGIK D TKL + YG+ VSR+VDLR+LA+ER         GL  L   LL R L K     +SR
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVAILQLCVGHSCLIFQFLHAE-CVPASLHAFLANL----RYTFVGVGIKDDATKLRDDYGLAVSRMVDLRALAMERLRNPSFGHMGLKKLVKVLLRRELEKPKEITLSR 166          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A059CJD2_EUCGR (3'-5' exonuclease domain-containing protein (Fragment) n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CJD2_EUCGR)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-15
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLR-RGLADLCVHLLGRTLPKDSSDRISR 127
            V+GLDIEW  +    +V+P AT+QL  G+  +IF +LH +  +PG L   L  L      T  GVGIK D  KL + YG+ VSR+VDLR LAV R   + L   GL  L   +L + L K     +S+
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVATLQLCVGRSCLIFQILHAEY-IPGSLHAFLGNL----NYTFVGVGIKDDAMKLRDDYGLTVSRMVDLRGLAVGRWRNLSLGYMGLKKLVKVILRKDLEKPKDVTLSQ 166          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: UPI0019017031 (Werner Syndrome-like exonuclease n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019017031)

HSP 1 Score: 73.2 bits (178), Expect = 2.480e-13
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLA 92
            V+GLDIEW  +       P AT+QL  G+  +IF ++H       E+P+ L++ LEDD  T  GVGI  D  +L N Y ++V+  VDLR LA
Sbjct:   58 VVGLDIEWRPNFNRRYRKPVATLQLCVGRRCLIFQLIH-----TSEIPESLIDFLEDDTFTFVGVGIDQDVQQLYNDYDLKVANTVDLRELA 144          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A059CK88_EUCGR (3'-5' exonuclease domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CK88_EUCGR)

HSP 1 Score: 72.4 bits (176), Expect = 4.030e-13
Identity = 50/127 (39.37%), Postives = 67/127 (52.76%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLR-RGLADLCVHLLGRTLPKDSSDRIS 126
            V+GLDIEW  +    +V+P AT+QL      +IF +LH +      +P  L   L +   T  GVGIK D  KLS+ +G+ VSR+VDLR LAV R     L   GL  L   +L + L K     +S
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVATLQLCVAHSCLIFQILHAEY-----VPASLHAFLGNLDYTFVGVGIKDDAMKLSDDFGLVVSRMVDLRGLAVGRWRNPSLGYMGLKKLVKVVLRKDLEKPKEITLS 165          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A7J7HIL9_CAMSI (3'-5' exonuclease domain-containing protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7HIL9_CAMSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.780e-12
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSDRISR 127
            ++GLDIEW  +   +  NP AT+QL  G+  +IF +L+       E+P  L++ L +   T  GVGI  D  KL   YG+ V+  VDLR+LA +  +      GL  +   +LG+ + K    RI+R
Sbjct:   62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQ--RITR 180          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A4S4EXV1_CAMSI (3'-5' exonuclease domain-containing protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EXV1_CAMSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.030e-12
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSDRISR 127
            ++GLDIEW  +   +  NP AT+QL  G+  +IF +L+       E+P  L++ L +   T  GVGI  D  KL   YG+ V+  VDLR+LA +  +      GL  +   +LG+ + K    RI+R
Sbjct:   62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQ--RITR 180          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.640e-12
Identity = 49/129 (37.98%), Postives = 67/129 (51.94%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGK-VVVIFYVLHGQRAV-PGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSDRISR 127
            V+G+D EWE    G+      T+QLA       +F++  G R   P      L  LL D  +TK GV +KGD ++L   YGVE   +VDLRS A    V++  R  LA +    LG++L K+ S R SR
Sbjct:   89 VLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSR 216          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A8B8NFB3_9MYRT (Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NFB3_9MYRT)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-11
Identity = 46/117 (39.32%), Postives = 59/117 (50.43%), Query Frame = 0
Query:    2 IGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRR-GLADLCVHLLGRTL 117
            +G DI+W  S A  + +P ATI L  G+  +++ +L  +      LP  L   L D +   TGV I  D  KLS  YG+EV + VDL  LA        LRR GLA L   L GR L
Sbjct:   56 VGFDIKWRPSFARGVRHPVATIHLCIGRCCLVYQILRARC-----LPRSLYLALRDPRFVFTGVRIAPDAAKLSEDYGLEVKKAVDLGKLAARETNRRELRRAGLATLVRELKGRDL 167          
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Match: A0A835DBI2_9MAGN (3'-5' exonuclease domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DBI2_9MAGN)

HSP 1 Score: 65.1 bits (157), Expect = 2.880e-10
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 0
Query:    1 VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLA 92
            ++GLD++W  S      NP A +QL  G+  +IF +LH        +P  L   L +   T  GVGI  D  KL   +G++VSR VDLRSLA
Sbjct:   57 IVGLDLQWRPSFGPTTQNPAAILQLCVGRNCLIFQLLHSPT-----IPPSLSNFLNNPDYTFVGVGIGEDVQKLLVDHGLQVSRTVDLRSLA 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig934.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE3.010e-5778.743'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI0011D1BD433.890e-1642.97Werner Syndrome-like exonuclease n=2 Tax=Syzygium ... [more]
A0A059CJD2_EUCGR1.190e-1541.413'-5' exonuclease domain-containing protein (Fragm... [more]
UPI00190170312.480e-1342.39Werner Syndrome-like exonuclease n=1 Tax=Benincasa... [more]
A0A059CK88_EUCGR4.030e-1339.373'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A7J7HIL9_CAMSI1.780e-1235.433'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A4S4EXV1_CAMSI2.030e-1235.433'-5' exonuclease domain-containing protein n=3 Ta... [more]
A0A6H5JRJ6_9PHAE5.640e-1237.983'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8B8NFB3_9MYRT1.100e-1139.32Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia... [more]
A0A835DBI2_9MAGN2.880e-1040.223'-5' exonuclease domain-containing protein n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..128
e-value: 1.4E-30
score: 108.3
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 2..126
e-value: 1.2E-8
score: 35.0
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 1..125
NoneNo IPR availablePANTHERPTHR13620:SF65OS01G0660800 PROTEINcoord: 1..125
NoneNo IPR availableCDDcd06141WRN_exocoord: 1..127
e-value: 1.26998E-37
score: 123.457
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig934contigP-littoralis_Contig934:19079..19465 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig934.12.1mRNA_P-littoralis_Contig934.12.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig934 19079..19465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig934.12.1 ID=prot_P-littoralis_Contig934.12.1|Name=mRNA_P-littoralis_Contig934.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
VIGLDIEWEISAAGALVNPPATIQLAAGKVVVIFYVLHGQRAVPGELPDE
LVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVG
LRRGLADLCVHLLGRTLPKDSSDRISRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_sf