prot_P-littoralis_Contig854.12.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig854.12.2
Unique Nameprot_P-littoralis_Contig854.12.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1138
Homology
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BLAST of mRNA_P-littoralis_Contig854.12.2 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.930e-21
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 0 
Query:   63 AEELRTPSDPSARIPRLTGTVTEYNFADMPRNPSNLGWTGQGGPTWFIHLGNAAVNIGGRIFPLTGTTQLGVRHRICP 140
            ++ELR P   S   P LTG VTEYNFADMPRNP++  WTGQGGPTWFI L +AAV IG ++ PL+G+TQLGVRHRI P
Sbjct:  325 SKELRRPKSFSVPTPVLTGRVTEYNFADMPRNPTSSVWTGQGGPTWFIQLKDAAVRIGAKVHPLSGSTQLGVRHRIVP 402
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig854.12.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSR4_9PHAE3.930e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 358..385
NoneNo IPR availableCOILSCoilCoilcoord: 614..641
NoneNo IPR availableCOILSCoilCoilcoord: 1000..1020
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 572..609
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..338
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 836..860
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1068..1103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 731..747
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 754..791
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1119..1138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 360..392
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 940..957
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1104..1118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 410..433
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..445
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 477..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 999..1016
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..1138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 621..663
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1017..1043
IPR009083Transcription factor IIA, alpha-helical domainGENE3D1.10.287.190coord: 22..69
e-value: 2.7E-7
score: 32.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig854contigP-littoralis_Contig854:50408..55642 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig854.12.2mRNA_P-littoralis_Contig854.12.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig854 50406..55642 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig854.12.2 ID=prot_P-littoralis_Contig854.12.2|Name=mRNA_P-littoralis_Contig854.12.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1138bp
PPAARRPALLCHCVTGHILMDAIYHRTHLGDALLHALQKLCVAGELEGAE
ARRILADFDEVIAEELRTPSDPSARIPRLTGTVTEYNFADMPRNPSNLGW
TGQGGPTWFIHLGNAAVNIGGRIFPLTGTTQLGVRHRICPIPPAPSANVK
GEGGRGGGKVKNEGKSSAGKKMPNQRKRILAKEEAVAGLDKGAAAGSSRA
RETEEDKLEEGTTNDAEGRDLKNVRNEVSRRGRKKAEKEERDEERGVEAT
GKKREGKRKRPPQDNPALGTLVGISKKAARGGRAAGAGGIWRTVDEGKGK
RGRKRGQVPAGLSTNAKKHYSAKVTARAGEAHDGTDEDDSSSSSDDSSSS
SSDSDADLDNLTKELDDDDEDLDALLEDLDRVDDDADDGDGACGDKSDDW
QQRYSQKPAPAQEKKVKRGKGQGNLEGTERSDGEESSSFSSSSSSASVAA
AALEFKMFMDSLEDGVGGYGDGSSDGTGEKGSANRSPRAAATTTAPAAAY
AGGGGGLETGRSVANEQDGKGYHDNEESSESLLTLSSLLVGRDRSDAAGE
GHARRIGAAAAAAAAQEHRQQAKVVDYAEKDEKEKAVKEEEEGGKENGEE
DHPEEGTANDAGGRTRANNQIETLRRGRRKEQEEEEKEEKEGERGIEATE
KKQLGKRKRPPNDNAARGILVSNSKKAARGGRAGGGIWGSVDEEKVKRGR
KRGQVSVKKNSSAKVTARASEAHDGTDEADSSSSSSDGSSSSSSDSDADI
DHLNKELDDDDDEDDDDDDDLDALLDDLDRVDDDADDDGDGGGACGEGSG
DSRQRSVQKPESAQEKKVKGGNCQVDLEGSERSDGEESSSSSSSPSSSSS
SPSSSSGSVAAAALEFEMFMGSLLDGGGGCGDSGSDGAGEKGSANRSPPA
AATATAPAAAHAGGGGGSGTGRSSANEQDGKGYHDNEEGSGESLLTSLSS
SSTLVVGRERSDAPGEGHGRGMGAAAAAAAAQGLRQQENVIDDARVGDEK
DEEKEEEEEDGADSDDLERELVGMVTGKRRNGDGEEERRGPEPEGGGGGV
GGGGGGGGVSGDAQAAQGFKDKRAEARKGRQERDGGSGQVKAHQEREGEP
SETPPDSESSSSSSSGEESSDEDVLELADLLEEIEGER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009083TFIIA_a-hlx