prot_P-littoralis_Contig85.41.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig85.41.1
Unique Nameprot_P-littoralis_Contig85.41.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1086
Homology
BLAST of mRNA_P-littoralis_Contig85.41.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 1202 bits (3110), Expect = 0.000e+0
Identity = 727/1119 (64.97%), Postives = 835/1119 (74.62%), Query Frame = 0
Query:    3 VFLRGRPTGSSGKLVSTLVSHGPSGEAPVVRLLVRGSPRLLCHRSLPARTSLPPAQEDHAAAXXXXXGPAPAVETPARQLQEELFRVLCEPRPSMPSLLALVRGIVAAGAEPSAEVVQALADHFSQAKDAKSLKAILSLLKGSKT--TAEDLIGMVSSRVIRAHCRRQDVTRALAEVVEMETSGREAGAEVFSVLLDACAMARPPLLREVETVWAHIE-------------------------------ERNLTTEGGSVRQDLFIGRMAAHANGAGYAPLGESQEDWQQALLKKVDESWNGMLEAL---ASAPAGGDGTFEEGGVVTAESWIARASALALCARDHGANSDAAMSGSLEALRSYQRCGGSFAGMNEAFALAGVVRGLARCGRQSEAVSILGNPLQASAQSEENGCTATTETTATAVDKATARTAATQAARVPDELLRALGARGRGLDSGGRPYGLALLKVVEDVATEAFARGDRSREDVDSRLTATLQAVLTTSRFLDRGDAAVINKAARVALDSAAAAVIDSEERGDNHAVEDSQGEVAAAGTSRRWPGPNLAALSILTLLHVSQNQREGIPAVVDVLQQMHDRGLSPPPSLAAQLETIFKRHGTVRQKRRSSFLLARALDGFGPPPDDEENAGQEEGAGSGTAVEDWDHGVVGAPRRVVGIGDAMRGMVESSTTRGVGERDAHTPAPAVAAEKFANGGXXXXXGSSAKISDPVDGAGGAPPLSAEARYQLSRQKTREVSLGGSASAGVRSIERACAAAAAGGAKGKREEAGEEQGRFAATTEPETESAESHRDLLRQVTVLAERGRAHAALMALQAVDGRKRGTRAAVPYKVYGLVFRALSIGYSARGVEELELAAAPTEALQWLLRGMARQGYSATTTNLNFGLEAFAVAAKTRKVREGGEEVRAQVCMEAMDFMEEMRDGWNGLLPPVLPNFVSFNIVIKVMCRLQMFDQAFEALEVMERGGFEPDLYTHSTLIHGLARAGDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGDVGEAISFAQHAFNQYGCAPTAEKFCRVVHAAAALDDGQHEARRAIVVAEQMWTDEWRGDGKTSHPVLGHANLRRLLKERGAFDQVNRL 1085
            +FLR    GS  +L   + S    G+AP+ RLL   SPR + H +LPARTS+P      +        P  ++E    QLQEE+FRVLCEPRPS PSL+ALVRG+VAAGA+PS E V+ALADHFS+AKDA+S+KA+LSLLK SK   TA D IG++ SR++RAHCRRQDVT ALAEVVEME +GRE   EV+S LL  CA+ARPPLL EVE VW HI+                               ER LTT GG V+QDLF+G M  HAN AGYA  G++Q+D QQ  L+KVDE+W+GMLEAL   ASA    D T +EGG+VT ESW+ARA+ALALC RD G  S AAMS S++A RSY+R GGSFA   + F LA VVRGLARCGRQSE  +IL +  Q + ++E N       TT TAVDKA  R+AAT+AA V DELLRALGARGRGLDSG R YGL+LL+VV+DVA +A A G+RS+ DVDSRLTATLQAVLTTSRFLDR DA  INKA R ALDSAAAA+  + E G  H VED QG  +     R W GPNLAALS+L LLHVSQN+ EGIPA +DVLQ+MHDRGL+PP +LAAQLET+FKRHGTVRQKRRSSFLLARALDGFGPP D+  + G +     GTA E       G  RRV  +G A+RGMV+SSTTRGVGE DA  P  A  AEK+A+GG        A  S    G   A P SAE  YQL RQ+ RE SL G+AS GVR++E++CAAAA   A    ++AG    R   +  P   ++ESHRD+LR+VTVLAERGR HAAL ALQAVDGRKRGTR +VPY+VY L+FRAL+ GYSA+G EEL LAAAP EALQWLLRGMARQGYSA TT LNFGLEAFAVAAKT++VREG EEVRA+VC EAMDFME MRDGWNGLLPPV PN VSFNI++KVMCRLQMFDQAFEALEVM+ GGFEPD +T STLIHGLA+AGD++     XXXXXXXXXXXXXXXXXXXXXXXXX  DVGEAISFAQHA+NQYGCAPTA K+CRVVHAAAAL+DGQHEARRAIVVAEQMW  EWRG+GKTSHPVLGHANLRRLL+ERGAFDQVNRL
Sbjct: 1645 LFLRRSLVGSKRELALAVCSRSQRGQAPLARLLAGASPRQV-HSALPARTSVP-VDGGASGTAAGAARPEDSIEVATSQLQEEMFRVLCEPRPSSPSLVALVRGMVAAGAQPSIEAVEALADHFSEAKDARSIKAVLSLLKPSKPGLTAVDPIGIMFSRLVRAHCRRQDVTSALAEVVEMEATGREVDLEVYSDLLHGCAIARPPLLGEVEAVWTHIQVRAVPAHARVSQGALVRIATSLADHARSRYMERGLTTRGG-VQQDLFVGLMTTHANSAGYALFGDNQQDQQQVPLEKVDEAWDGMLEALNVAASASTDPDRTVDEGGLVTPESWMARAAALALCVRDSGLVSGAAMSRSMDAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSEVEAILSDLRQDAEKAERNASAVAASTTKTAVDKAKTRSAATRAALVFDELLRALGARGRGLDSGDRLYGLSLLRVVDDVAAQAHACGERSQGDVDSRLTATLQAVLTTSRFLDREDATSINKAIRTALDSAAAAI--AAEVGGRHPVEDLQGG-SEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNNDDGAD-----GTAAEQE-----GDARRVGRVGGAIRGMVKSSTTRGVGEWDAQEPLGA--AEKYASGGGDTQGNDEASYST---GDSAAQP-SAEQSYQLLRQRRREASLNGNASVGVRNVEQSCAAAAVAAAAEVTKDAGRGLDRRHPSQAPTPGASESHRDILRRVTVLAERGRPHAALAALQAVDGRKRGTRVSVPYRVYALLFRALANGYSAQGCEELGLAAAPAEALQWLLRGMARQGYSAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKVMCRLQMFDQAFEALEVMQSGGFEPDRFTFSTLIHGLAKAGDNNGAWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGEAISFAQHAYNQYGCAPTAGKYCRVVHAAAALNDGQHEARRAIVVAEQMWEGEWRGEGKTSHPVLGHANLRRLLEERGAFDQVNRL 2741          
BLAST of mRNA_P-littoralis_Contig85.41.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI)

HSP 1 Score: 943 bits (2437), Expect = 0.000e+0
Identity = 559/888 (62.95%), Postives = 645/888 (72.64%), Query Frame = 0
Query:  107 IVAAGAEPSAEVVQALADHFSQAKDAKSLKAILSLLKGSKT--TAEDLIGMVSSRVIRAHCRRQDVTRALAEVVEMETSGREAGAEVFSVLLDACAMARPPLLREVETVWAHIEERNLTTEGGSVRQDLFIGRMAAHANGAGYAPLGESQEDWQQ---------------------------------------------ALLKKVDESWNGMLEAL---ASAPAGGDGTFEEGGVVTAESWIARASALALCARDHGANSDAAMSGSLEALRSYQRCGGSFAGMNEAFALAGVVRGLARCGRQSEAVSILGNPLQASAQSEENGCTATTETTATAVDKATARTAATQAARVPDELLRALGARGRGLDSGGRPYGLALLKVVEDVATEAFARGDRSREDVDSRLTATLQAVLTTSRFLDRGDAAVINKAARVALDSAAAAVIDSEERGDNHAVEDSQGEVAAAGTSRRWPGPNLAALSILTLLHVSQNQREGIPAVVDVLQQMHDRGLSPPPSLAAQLETIFKRHGTVRQKRRSSFLLARALDGFGPPPDDEENAGQEEGAGSGTAVEDWDHGVVGAPRRVVGIGDAMRGMVESSTTRGVGERDAHTPAPAVAAEKFANGGXXXXXGSSAKISDPVDGAGGAPPLSAEARYQLSRQKTREVSLGGSASAGVRSIERACAAAAAGGAKGKREEAGEEQGRFAATTEPETESAESHRDLLRQVTVLAERGRAHAALMALQAVDGRKRGTRAAVPYKVYGLVFRALSIGYSARGVEELELAAAPTEALQWLLRGMARQGYSATTTNLNFGLEAFAVAAKTRKVREGGEEVRAQVCMEAMDFMEEMRDGWNGLLPPVLPNFVSFNIVIKVMCRLQMFDQAFEALEVMERGGFE 944
            +VAAGA+PS E ++ALADHFS+AKDA+S+KA+LSLLKGSK   TA D IG++ SR++RAHCRRQDVT ALAEV EME +GRE   EV+S LL  CA+ARPPLL E+E VWAHI+ER LTT GG V+QD+F+G M  HAN AGYAP G++Q+D QQ                                             A L+KVDE+W+GMLEAL   ASA    D T +EGG+VT ESW+ARAS+LALC RD G  SD AMS S+EA RSY+R GGSFA   + F LA VVRGLARCGRQSE  +I  +  Q + ++E N       TT TAVDKA  R+AAT+AARV DELLRALGARGRGLDSGGRPYGL+LL+VVEDVA +A A GDRS+ DVDSRLTATLQAVLTTSRFLDR DAA INKA R ALDSAA A+          +VED QG  +     R W GPNLAALS+L LLHVSQN+ EGIPA +DVLQ+MHDRGL+PP +LAAQLET+FKRHGTVRQKRRSSFLLARALDGFGPP D+ ++         GTA E       G  RRVVG+G+A+RGMVESSTTRGV E DA  P    AAE+ ANG      G+             A   SAE  YQL RQ+ RE SL G+ASAGVR++E++CAAA A  A+   +EAG    R   +  P   ++ESHRD+L++VTVLAERGR HAAL ALQAVDGRKRGTR AVPY+VY L+FRAL+ GYSA+G EEL LAAAP EALQWLLRGMARQGY A TT LNFGLEAFAVAAKT++VREG EEVRA+VC EAMDFME MRDGWNGLLPPV PN VSFNI++KVMCRLQMFDQAFEALEVM+RGGFE
Sbjct:    1 MVAAGAQPSIEAIEALADHFSEAKDARSIKAVLSLLKGSKPGLTAVDPIGIMFSRLVRAHCRRQDVTSALAEVAEMEATGREVDVEVYSDLLHGCAIARPPLLVEMEAVWAHIQERGLTTRGG-VQQDIFVGLMTTHANSAGYAPFGDNQQDQQQRTVLGACGVPHPLKGHGPPLSVPSAADKSNKFQHCSYSPRNSRTQAPLEKVDEAWDGMLEALNEAASASTDPDRTADEGGLVTPESWMARASSLALCVRDSGLISDDAMSRSMEAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSEVEAIFSDLRQDAEKAERNASAVAASTTKTAVDKAKTRSAATRAARVFDELLRALGARGRGLDSGGRPYGLSLLEVVEDVAGQAHACGDRSQGDVDSRLTATLQAVLTTSRFLDREDAASINKAIRTALDSAATAIA---------SVEDLQGR-SEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNDDGDD------GTAAEQE-----GDARRVVGVGEAIRGMVESSTTRGVDEWDAQEPL--AAAEESANG----DGGTQVNEEGXXXXXXXAVRPSAEQSYQLLRQRLREASLNGNASAGVRNVEQSCAAAVAAAAE-LTKEAGRGPDRRHPSQAPTQGASESHRDILKRVTVLAERGRPHAALAALQAVDGRKRGTRVAVPYRVYALLFRALANGYSAQGWEELGLAAAPAEALQWLLRGMARQGYPAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKVMCRLQMFDQAFEALEVMQRGGFE 859          
BLAST of mRNA_P-littoralis_Contig85.41.1 vs. uniprot
Match: D7FVF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF9_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.040e-45
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 0
Query:  996 GDVGEAISFAQHAFNQYGCAPTAEKFCRVVHAAAALDDGQHEARRAIVVAEQMWTDEWRGDGKTSHPVLGHANLRRLLKERGAFD 1080
            GDVGEAISFAQHA+NQYGCAPTA KFCRVVHAAAALDDGQHEARRAIVVAEQMW  +WRG+GKTSHPVLGHANLRRLL+ERGAFD
Sbjct:   36 GDVGEAISFAQHAYNQYGCAPTAGKFCRVVHAAAALDDGQHEARRAIVVAEQMWEGDWRGEGKTSHPVLGHANLRRLLEERGAFD 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.41.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KBD4_9PHAE0.000e+064.97Integrase catalytic domain-containing protein n=1 ... [more]
D7FVF8_ECTSI0.000e+062.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVF9_ECTSI4.040e-4591.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 913..946
e-value: 4.3E-6
score: 24.6
coord: 948..982
e-value: 2.0E-7
score: 28.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 910..959
e-value: 2.6E-12
score: 46.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 911..945
score: 10.917512
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 946..980
score: 11.8273
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 94..280
e-value: 2.4E-5
score: 25.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 831..1062
e-value: 7.9E-26
score: 93.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 594..629
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 643..708
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 743..768
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..70
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 832..1064

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:169961..185039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.41.1mRNA_P-littoralis_Contig85.41.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig85 169906..185459 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig85.41.1 ID=prot_P-littoralis_Contig85.41.1|Name=mRNA_P-littoralis_Contig85.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1086bp
MAVFLRGRPTGSSGKLVSTLVSHGPSGEAPVVRLLVRGSPRLLCHRSLPA
RTSLPPAQEDHAAAAAAAAGPAPAVETPARQLQEELFRVLCEPRPSMPSL
LALVRGIVAAGAEPSAEVVQALADHFSQAKDAKSLKAILSLLKGSKTTAE
DLIGMVSSRVIRAHCRRQDVTRALAEVVEMETSGREAGAEVFSVLLDACA
MARPPLLREVETVWAHIEERNLTTEGGSVRQDLFIGRMAAHANGAGYAPL
GESQEDWQQALLKKVDESWNGMLEALASAPAGGDGTFEEGGVVTAESWIA
RASALALCARDHGANSDAAMSGSLEALRSYQRCGGSFAGMNEAFALAGVV
RGLARCGRQSEAVSILGNPLQASAQSEENGCTATTETTATAVDKATARTA
ATQAARVPDELLRALGARGRGLDSGGRPYGLALLKVVEDVATEAFARGDR
SREDVDSRLTATLQAVLTTSRFLDRGDAAVINKAARVALDSAAAAVIDSE
ERGDNHAVEDSQGEVAAAGTSRRWPGPNLAALSILTLLHVSQNQREGIPA
VVDVLQQMHDRGLSPPPSLAAQLETIFKRHGTVRQKRRSSFLLARALDGF
GPPPDDEENAGQEEGAGSGTAVEDWDHGVVGAPRRVVGIGDAMRGMVESS
TTRGVGERDAHTPAPAVAAEKFANGGGGGGDGSSAKISDPVDGAGGAPPL
SAEARYQLSRQKTREVSLGGSASAGVRSIERACAAAAAGGAKGKREEAGE
EQGRFAATTEPETESAESHRDLLRQVTVLAERGRAHAALMALQAVDGRKR
GTRAAVPYKVYGLVFRALSIGYSARGVEELELAAAPTEALQWLLRGMARQ
GYSATTTNLNFGLEAFAVAAKTRKVREGGEEVRAQVCMEAMDFMEEMRDG
WNGLLPPVLPNFVSFNIVIKVMCRLQMFDQAFEALEVMERGGFEPDLYTH
STLIHGLARAGDSDGAWEVMVDMTNKGIAPDSIVIDGIVDGFVQKGDVGE
AISFAQHAFNQYGCAPTAEKFCRVVHAAAALDDGQHEARRAIVVAEQMWT
DEWRGDGKTSHPVLGHANLRRLLKERGAFDQVNRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf