prot_P-littoralis_Contig757.30.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig757.30.1
Unique Name	prot_P-littoralis_Contig757.30.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	131

Homology

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.450e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGR 94
            MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGR
Sbjct:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGR 94

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.010e-41
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGG 93
            MLPLSLL+TAQ  PMLVELKNGDTYNGRLD CD+WMNIKL+DVI+TSRD D+F K+ EVYVRG SIKY+TIP+EVL+MV EE+  KEKRA  G
Sbjct:    1 MLPLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.070e-41
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR--AMGGR 94
            MLPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R  + GGR
Sbjct:   15 MLPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQETRNASRGGR 110

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 140 bits (353), Expect = 8.110e-41
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 89
            MLPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R
Sbjct:   14 MLPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQESR 102

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 139 bits (349), Expect = 6.640e-40
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEK 88
            MLPLSLLKTAQG PMLVELKNGDTYNGRL +CD+WMNI L+DVI TSRD D+F K+ E YVRGNSIKY+ +PEEV+DMV EEDL +E+
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A7S2W2A9_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2A9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.840e-39
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEK-------RAMGGR 94
            MLPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI LK+VI TSRD D+F K+ E Y+RGNSIKY+ IPEEV+DMV E++   +K       R  GGR
Sbjct:    9 MLPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLKEVICTSRDGDRFWKLAECYIRGNSIKYLRIPEEVIDMVPEDNFKADKHSGRHAGRGRGGR 109

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.040e-39
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKE----KRAMGGR 94
            MLPLSLLKTAQG PMLVELKNGDTYNGRL +CDSWMNI L++VI TSRD D+F ++ E Y+RGNSIKY+ IP+EV+DMV EE + KE     R  GGR
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRGRGGR 98

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A6A3LNI3_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.210e-38
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 89
            MLPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK  R
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDR 89

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: H3G5G4_PHYRM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G4_PHYRM)

HSP 1 Score: 133 bits (334), Expect = 9.340e-38
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 0

Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 89
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EEDL++  R
Sbjct:    1 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDLNRRDR 88

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BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Match: A0A3R7JEC8_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JEC8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.150e-37
Identity = 62/86 (72.09%), Postives = 73/86 (84.88%), Query Frame = 0

Query:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK 86
            MLPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSK 86

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig757.30.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8J7_ECTSI	1.450e-58	100.00	U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E...	[more]
A0A836C9X5_9STRA	1.010e-41	76.34	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T...	[more]
A0A7S2E5C6_9STRA	5.070e-41	72.92	U6 snRNA-associated Sm-like protein LSm4 (Fragment...	[more]
A0A7S2FS84_9STRA	8.110e-41	75.28	U6 snRNA-associated Sm-like protein LSm4 (Fragment...	[more]
W7TE23_9STRA	6.640e-40	76.14	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N...	[more]
A0A7S2W2A9_9STRA	5.840e-39	68.32	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=R...	[more]
A0A7S2UV99_9STRA	7.040e-39	69.39	U6 snRNA-associated Sm-like protein LSm4 (Fragment...	[more]
A0A6A3LNI3_9STRA	1.210e-38	70.79	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P...	[more]
H3G5G4_PHYRM	9.340e-38	69.32	U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P...	[more]
A0A3R7JEC8_9STRA	1.150e-37	72.09	U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=P...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..71 e-value: 3.9E-17 score: 72.9
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..70 e-value: 5.7E-17 score: 61.2
None	No IPR available	GENE3D	2.30.30.100		coord: 1..83 e-value: 2.0E-31 score: 109.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..111
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 1..128
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..128
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 2..77 e-value: 2.04173E-45 score: 140.404
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 3..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig757	contig	P-littoralis_Contig757:71419..76240 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig757.30.1	mRNA_P-littoralis_Contig757.30.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig757 71419..76368 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig757.30.1 ID=prot_P-littoralis_Contig757.30.1|Name=mRNA_P-littoralis_Contig757.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDA
DKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGRGRGR
GGRDGGRGGGGRGRGDGRGGGGGRGEGRGRG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR027141	LSm4/Sm_D1/D3
IPR034101	Lsm4
IPR010920	LSM_dom_sf