prot_P-littoralis_Contig75.28.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig75.28.1
Unique Nameprot_P-littoralis_Contig75.28.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length271
Homology
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BLAST of mRNA_P-littoralis_Contig75.28.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 9.620e-120
Identity = 191/269 (71.00%), Postives = 221/269 (82.16%), Query Frame = 0 
Query:    1 METPNVLKQLEINFGLVLNDLEFASHELDARMKDAARANVSIPDLHALQHRIRAIKTEMPRLAKNATEVEAERRETESVLNTALIENYNVMVGLYARLGVAPDPEWVATAASVESFLPAVSRDSSASENLSSEYEEGGGVSGPAGGPEAEGSTELYSKRDDVSASRVEEKIDKRSSPSIIFEEEFLAVQSRIRGRSKLQDVRKVYAKVRQDHEEKTSRGRPGCKPKPITKRELDAAGLKVFGLTGDCILNTLRAMGLVTVSKGSVALAS 269
            +E+ ++LKQLEINF L LNDLEFASH+LD+RMKDA RANVSIPDLH L HRIRAIKTE+P LAK+ATEVEAER+ETE  LNT +IENYNVMVGLYARLGVAPDPEWVATAA VESFLPA     + S++  S  +EG GV         + ST L+S   ++SASRVEE++ ++S  S+IFEE+FLA+ +  RGRSKLQDVRKVYAKVR+D E K SRGRPGCKP PITKRELDAAGLKVFGLTGDC+LN LRAMGL+TV KGSVA+AS
Sbjct:    4 LESTDILKQLEINFDLALNDLEFASHQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTVLHSGNPEMSASRVEERVVEQSF-SVIFEEDFLAIHANTRGRSKLQDVRKVYAKVREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLNALRAMGLITVHKGSVAMAS 271
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BLAST of mRNA_P-littoralis_Contig75.28.1 vs. uniprot
Match: A0A2R5GLM8_9STRA (SKA2 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLM8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.630e-8
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:  172 DKRSSPSIIFEEEFLAVQSRIRGRSKLQDVRK----VYAKVRQDHEEKTSRG------RPGCKPKPITKRELDAAGLKVFGLTGDCILNTLRAMGLVTVSKGSVAL 267
            D+  SP  +  E F A+   IRGR++L DV++    + +   +   +++ RG      RPG  P  ++ +ELDA G KV G TG C+L  LR++GLV +S+  V L
Sbjct:  195 DEPKSPLEVSPEAFAALPDSIRGRARLSDVQRTLEIIISHAGKATSKRSGRGGKGRAPRPGASPPAMSIKELDALGAKVVGHTGACVLQCLRSLGLVDISRDGVQL 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.28.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG11_ECTSI9.620e-12071.00SKA2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2R5GLM8_9STRA6.630e-836.79SKA2 domain-containing protein n=1 Tax=Hondaea fer... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF11362DUF3161coord: 180..260
e-value: 2.2E-7
score: 30.8
NoneNo IPR availableGENE3D6.10.250.1380coord: 1..119
e-value: 3.6E-7
score: 32.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..161
IPR042091Ska2, N-terminalPFAMPF16740SKA2coord: 7..110
e-value: 4.4E-16
score: 58.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:81306..93836 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.28.1mRNA_P-littoralis_Contig75.28.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig75 81304..94200 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig75.28.1 ID=prot_P-littoralis_Contig75.28.1|Name=mRNA_P-littoralis_Contig75.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
METPNVLKQLEINFGLVLNDLEFASHELDARMKDAARANVSIPDLHALQH
RIRAIKTEMPRLAKNATEVEAERRETESVLNTALIENYNVMVGLYARLGV
APDPEWVATAASVESFLPAVSRDSSASENLSSEYEEGGGVSGPAGGPEAE
GSTELYSKRDDVSASRVEEKIDKRSSPSIIFEEEFLAVQSRIRGRSKLQD
VRKVYAKVRQDHEEKTSRGRPGCKPKPITKRELDAAGLKVFGLTGDCILN
TLRAMGLVTVSKGSVALASL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042091Ska2_N