|
|
Homology
BLAST of mRNA_P-littoralis_Contig75.15.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI) HSP 1 Score: 137 bits (345), Expect = 1.880e-29 Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 0
Query: 55 LPESATAVALVLACTVRGGNGFIGPISWPSSGRLSKGKTDRDPLCAAVPARPTCG-AGRRMHQPSPVCYSARNVGTHATTRVGAATATRVHKRSGATISTYRPKLQRALRQAGKSVNWRKALEILDEMKQRGIVDAHSYTTAITVCGRRGQWNTALSLLREMPAQ-GVPLNAFC 226
LPES A+ LV AC+ RGG+GF+G P SG +SKG R P +A+PA P CG A ++ SP+ AR+ A ++G ATA + + S KLQ ALR+A + WR+AL ILDEMK+ G+V AHSYTTAIT CGR+GQW AL LLRE+P Q GV N FC
Sbjct: 14 LPESLLAL-LVFACSARGGSGFVGG---PISGPMSKGSAARGPSHSAIPAHPACGGAAGGVYHSSPMRRHARSC-CRAAPKLGEATAVVTMQGAARANSRAARKLQAALREAATTGKWREALGILDEMKEGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFC 182
BLAST of mRNA_P-littoralis_Contig75.15.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 8.600e-7 Identity = 68/211 (32.23%), Postives = 87/211 (41.23%), Query Frame = 0
Query: 52 MPTLPESATAVALVLACTVRGGNGFIGPISWPSSGRLSKGKTDRDPLCAAVPARPTCGAGRRMHQPSPVCYSARNVGTHATTR--------------VGAATATRVHKRSGATISTYRPKL--------------QRALRQAGKSV-------------NWRKALEILDEMKQRG--IVDAHSYTTAITVCGRRGQWNTALSLLREMPAQG 219
MPT E A ALVL +V GG+GF G + S R S +P R TC RR H+ S V Y A R G+ A + + G ++ RP L Q A+ KS+ +WRKAL +D MK+ ++D SY AIT CGR GQW A+ LLREMP +G
Sbjct: 1 MPTWLERL-ATALVLGWSVHGGDGFTGSTDFHVSNRQSSHDV--------MPPRDTCVTSRRAHRASRV-YRRTRANGRAVRRWLKTGMPFELRALPPGSDAANNIARADGG--NSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEG 199
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 540..574
e-value: 5.1E-8
score: 30.6
coord: 645..678
e-value: 3.4E-5
score: 21.7
coord: 822..854
e-value: 4.6E-4
score: 18.2
coord: 470..504
e-value: 1.3E-4
score: 19.9
coord: 961..994
e-value: 1.4E-7
score: 29.3
coord: 295..329
e-value: 1.7E-5
score: 22.7
coord: 225..259
e-value: 1.1E-8
score: 32.7
coord: 681..713
e-value: 1.5E-8
score: 32.3
coord: 436..469
e-value: 6.0E-8
score: 30.4
coord: 610..644
e-value: 1.1E-6
score: 26.5
coord: 260..294
e-value: 2.8E-8
score: 31.4
coord: 787..819
e-value: 1.4E-5
score: 22.9
coord: 505..539
e-value: 8.9E-8
score: 29.8
coord: 190..223
e-value: 1.0E-5
score: 23.3
coord: 365..399
e-value: 3.6E-9
score: 34.2
coord: 756..783
e-value: 4.4E-4
score: 18.2
coord: 575..609
e-value: 1.6E-5
score: 22.8
coord: 330..364
e-value: 3.4E-8
score: 31.2
coord: 716..748
e-value: 7.7E-4
score: 17.5
coord: 891..922
e-value: 1.2E-4
score: 20.0 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 169..186
e-value: 0.26
score: 11.6
coord: 191..220
e-value: 7.6E-4
score: 19.6
coord: 756..778
e-value: 0.004
score: 17.3
coord: 295..323
e-value: 4.1E-4
score: 20.4
coord: 402..430
e-value: 0.55
score: 10.6 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 957..1004
e-value: 2.7E-9
score: 37.1
coord: 432..479
e-value: 6.6E-10
score: 39.0
coord: 327..374
e-value: 3.8E-12
score: 46.2
coord: 678..724
e-value: 2.1E-8
score: 34.2
coord: 223..270
e-value: 2.8E-11
score: 43.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 596..656
e-value: 1.5E-13
score: 50.6
coord: 526..586
e-value: 5.6E-10
score: 39.2 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 608..642
score: 12.934392 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 363..397
score: 13.076888 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 678..712
score: 13.350921 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 573..607
score: 11.334042 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 958..992
score: 12.24383 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 783..817
score: 10.500983 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 398..432
score: 8.867749 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 643..677
score: 11.498462 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 468..502
score: 11.761533 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 258..292
score: 12.616514 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 818..852
score: 10.402331 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 223..257
score: 12.780933 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 748..782
score: 10.150222 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 853..887
score: 10.13926 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 188..222
score: 10.632519 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 328..362
score: 13.241308 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 713..747
score: 10.347525 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 503..537
score: 12.002681 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 293..327
score: 11.279235 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 538..572
score: 12.682281 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 888..922
score: 11.268274 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 433..467
score: 12.813817 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 323..393
e-value: 5.8E-19
score: 70.3 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 798..923
e-value: 1.0E-31
score: 112.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 723..796
e-value: 5.5E-15
score: 57.2
coord: 514..618
e-value: 1.5E-35
score: 124.2
coord: 619..722
e-value: 2.7E-35
score: 123.4
coord: 926..1045
e-value: 5.4E-26
score: 93.1
coord: 411..513
e-value: 9.0E-31
score: 108.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 155..322
e-value: 2.5E-50
score: 173.6 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 790..949
e-value: 1.2E-6
score: 28.0 |
| None | No IPR available | PANTHER | PTHR45613 | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | coord: 308..607
coord: 166..527
coord: 724..1042
coord: 521..792 |
| None | No IPR available | SUPERFAMILY | 81901 | HCP-like | coord: 342..396 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_P-littoralis_Contig75.15.1 ID=prot_P-littoralis_Contig75.15.1|Name=mRNA_P-littoralis_Contig75.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1046bp
MEVLLHRCVSTSTGEGMLSALVGVCETVWARSISALSVSTRKPERREYCT
RMPTLPESATAVALVLACTVRGGNGFIGPISWPSSGRLSKGKTDRDPLCA
AVPARPTCGAGRRMHQPSPVCYSARNVGTHATTRVGAATATRVHKRSGAT
ISTYRPKLQRALRQAGKSVNWRKALEILDEMKQRGIVDAHSYTTAITVCG
RRGQWNTALSLLREMPAQGVPLNAFCYNSAIEACGGAGQWEKALDLLREM
PDRGVPPDAFSYNSAIKACGKRKQSKEAVSLLREMLERGVAPDVISYNSA
IAACGNGGQLEVALELLREMPTKELTPDVFSFNIAIRACGTVGRWEEALE
LLREMPKNGVTPNVFSYNSAISACGSRGHWEEAVSLLSEMMEQGVAPNIM
HFSAAIKVCGIAGQGKKALELLRTLLKNGIAPDTTSYNSAIEACGKSGRW
KDAVGLLREMPAQGLSPDAISYNSAIKACREGGQWKQALDLLREMAPQGI
TPDAISFNIAIRACGEQDSWEKALELLREMPRQGLTPDTISYNSAIVACG
RARQWQKALELLREMPREGVAPDAISYNSAIAACGAKDKWEQAVDLLREM
PMQGLTPDVFSYTSAIEACGKRGQWKNALELLREMPQKGVTPNVITYNSA
VKACGNGGQWKRAVTLLREVSKKGLVPSLLSYNSAIKACGKCGRWKEAME
LLKEMPEHGLAPNRACYNSGIEACKVKGQWEMALSILKLMEERGVAPTAN
SYSLGIEACGKDGRGEEALALLREMTRRELSPSFINYSSVIGACGNGGQW
EGALHLLREMPTLGLVPSVFNYNEAIQACGRGGQWKRAVGLLKEMPEHRL
IPDAISYNSAIEACEMEHQWETAIALLKFMTKQGVDPSVTSYSLALEACR
KAGRGEEAVDLLREMSNRGLAPLDINYRSAIGACGNSGQWENALNLLEES
ATLGLAPDVSSYNSAIMACGLEGQWEEALCLVREMQDRGLTPDAVSFSLA
LEACGMGKRWEEAVNLLEETREVAVPQDATTFLAAVSTCRKGGEE* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
|