prot_P-littoralis_Contig71.83.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig71.83.1
Unique Nameprot_P-littoralis_Contig71.83.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length236
Homology
BLAST of mRNA_P-littoralis_Contig71.83.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 4.310e-70
Identity = 144/221 (65.16%), Postives = 167/221 (75.57%), Query Frame = 0
Query:   19 MKRCRVI-EGLLLLLLSGHGCNAMLG-RRNIAIPITASIQRHNERPISVGSPHTRCTTRS-RVTAAVASTSHLTTGRTASGVIENCMEGALSTIQSFVAXXXXXXXXXXXXGGTFGKVPDVGWLKSVQMKAVEMGGNWGTLSAAFSGFTSVSTIVRARNDKWDQVLGACGAGAFLNRAKGPQGMVQGAATYGLFSLVFAFPA-REDELDVVDVPVDAPIKR 235
            M  CR++ +GLLL +    GCNA+ G  RN    + A++Q H+    +  +P TR   R   V AAVASTSHLTTGRTASGV+EN              XXXXXXXXXXXX  +FG+VPDVGWLKSVQ KAVEMGGNWG LSAAF+GFTS+ST++R RNDKWDQVLGACGAGAFLNRAKGPQGM QGAATYGLFSL+FAFP+ ++DELDVVD+PVDAP  R
Sbjct:    1 MAYCRLLLQGLLLSV--ALGCNALPGWSRN---SVGAAVQPHHGLAWTSRTPTTRTLRRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDAPKTR 216          
BLAST of mRNA_P-littoralis_Contig71.83.1 vs. uniprot
Match: A0A1X6P919_PORUM (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P919_PORUM)

HSP 1 Score: 62.8 bits (151), Expect = 2.160e-8
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  152 NWGTLSAAFSGFTSVSTIVRARNDKWDQVLGACGAGAFLNRAKG--PQGMVQGAATYGLFSLV 212
            +WG +SA +SG  + + + RA+ND+W+ V+GACG+GA  + A G  P+  VQG  ++ LFS V
Sbjct:  123 SWGGVSAVYSGLQTAAKVARAKNDRWNNVIGACGSGAAFSCASGGGPRAAVQGCVSFALFSYV 185          
BLAST of mRNA_P-littoralis_Contig71.83.1 vs. uniprot
Match: A0A7S0VK43_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VK43_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 5.490e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0
Query:  137 GWLKSVQMKAVEMGGNWGTLSAAFSGFTSVSTIVRARNDKWDQVLGACGAGAFLN 191
            G  K+     V+ G +WG +SAAF G   ++  VR   DKW+ ++GACGAGA  N
Sbjct:  148 GGFKAAMANGVKTGNSWGIMSAAFCGLEVLAREVRGTQDKWNNMVGACGAGACAN 202          
BLAST of mRNA_P-littoralis_Contig71.83.1 vs. uniprot
Match: A0A7S1H0Q5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H0Q5_HEMAN)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 0
Query:  137 GWLKSVQMKAVEMGGNWGTLSAAFSGFTSVSTIVRARNDKWDQVLGACGAGAFLN 191
            G  K+     V+ G +WG +SAAF G   ++  +R   DKW+ ++GACGAGA  N
Sbjct:  148 GGFKAAMANGVKTGNSWGIMSAAFCGLEVLAKEIRGTQDKWNNMVGACGAGACAN 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.83.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH74_ECTSI4.310e-7065.16Mitochondrial import inner membrane translocase su... [more]
A0A1X6P919_PORUM2.160e-844.44Mitochondrial import inner membrane translocase su... [more]
A0A7S0VK43_9CRYP5.490e-543.64Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1H0Q5_HEMAN7.580e-541.82Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 108..210
e-value: 1.9E-13
score: 50.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:294508..305411 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.83.1mRNA_P-littoralis_Contig71.83.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig71 293965..305460 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig71.83.1 ID=prot_P-littoralis_Contig71.83.1|Name=mRNA_P-littoralis_Contig71.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=236bp
MCSSRNVTSSERTLSVNIMKRCRVIEGLLLLLLSGHGCNAMLGRRNIAIP
ITASIQRHNERPISVGSPHTRCTTRSRVTAAVASTSHLTTGRTASGVIEN
CMEGALSTIQSFVAGSVMGCVIGGFTGGTFGKVPDVGWLKSVQMKAVEMG
GNWGTLSAAFSGFTSVSTIVRARNDKWDQVLGACGAGAFLNRAKGPQGMV
QGAATYGLFSLVFAFPAREDELDVVDVPVDAPIKR*
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