prot_P-littoralis_Contig707.37.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig707.37.1
Unique Nameprot_P-littoralis_Contig707.37.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length177
Homology
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.970e-62
Identity = 114/162 (70.37%), Postives = 126/162 (77.78%), Query Frame = 0
Query:    1 MKCSLLFALALRAQCGNAFVGPIGGLALSNCVSAAVGAQNGIVRRGVASTPQARAAAASSADSEVSVVVRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKEMRRHPRT 162
            MKCSLL ALA RAQ G  FVGP GGL LSNCVS A  + N IVRRGVAST  +  AAAS   S+ SV +RK AV+E +AER +L K QAEAALAAFTD+VM  VADG KI+LQGFGTFEGRARKGRTGRNPRTGEEL IKA T PAFSA+KAFK+M +   T
Sbjct:    1 MKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVAST--SLKAAASDEGSDASVNLRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMVKAAHT 160          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: A0A7S1Y344_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y344_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.890e-22
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKE 155
            VRK A++E +AER   +K ++  A+ A  D +M  VADGKK+NLQGFGTF+   RK RTGRNP+TGE L IKA   P+FSAAK FKE
Sbjct:   66 VRKPALVEMVAERMGTSKSESTQAIEAVVDTIMEVVADGKKLNLQGFGTFKLSERKARTGRNPKTGESLEIKASKTPSFSAAKGFKE 152          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.220e-21
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKEMRRHPR 161
            ++K   +  ++ +  L+K Q +AA++AF D VM  VADGKK++L GFGTFE R R  R GRNP+TGE L+I A   PAFSAAKAFK+  +  R
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKEAR 93          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: A0A151ALX2_9CLOT (DNA-binding protein HU n=2 Tax=Clostridium TaxID=1485 RepID=A0A151ALX2_9CLOT)

HSP 1 Score: 90.9 bits (224), Expect = 9.180e-21
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKEM 156
            + K+ +I  MAE+G LTK  AEAAL AF + V   ++ G+K+ L GFGTFE R R  R GRNPRT EE+TI A TVP F A K FK+M
Sbjct:    1 MNKSELIASMAEKGQLTKKDAEAALKAFIESVEETLSKGEKVQLVGFGTFEVRERAERKGRNPRTKEEITIPASTVPVFKAGKEFKDM 88          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: UPI000B59B412 (HU family DNA-binding protein n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B59B412)

HSP 1 Score: 90.5 bits (223), Expect = 1.300e-20
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKE 155
            + K  +++ +AE+ D+ K  AEA L A  + +M +VADG+K+ L GFGTFE R R+ R GRNP+TGE +TI A TVPAFSA K FK+
Sbjct:    1 MNKGELVDKIAEKADIPKKTAEAVLTAAIESIMESVADGEKVTLVGFGTFEPRQRQEREGRNPKTGETMTIPASTVPAFSAGKVFKD 87          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: UPI001684A996 (HU family DNA-binding protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001684A996)

HSP 1 Score: 90.5 bits (223), Expect = 1.300e-20
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKE 155
            + K  +I+ +AE+ ++TK +A+A ++AFT+ V+  VA+G+K+ L GFGTFE RAR  R GRNP+TGE + I A TVP FSA K FKE
Sbjct:    1 MNKAELIDKVAEKANVTKKEADALISAFTESVVEAVAEGQKVTLVGFGTFEPRARAEREGRNPKTGEAMKIPASTVPVFSAGKLFKE 87          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: UPI00199DAA8D (HU family DNA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI00199DAA8D)

HSP 1 Score: 90.1 bits (222), Expect = 1.830e-20
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKE 155
            + K  +++ +AE+  +TK +AEA L A T+ +M  VA G+K+ L GFGTFE R R+ R GRNP+TGE +TI A TVPAFSA K FKE
Sbjct:    1 MNKGELVDKVAEKTGVTKREAEATLNALTESIMEAVAGGEKVTLVGFGTFEARQRQEREGRNPKTGESMTIPASTVPAFSAGKLFKE 87          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: A0A1J1LMK7_9CYAN (DNA-binding protein HU n=13 Tax=Oscillatoriales TaxID=1150 RepID=A0A1J1LMK7_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 3.060e-20
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKEM 156
            + K  +++  A +  +TK QA+  ++A  D +M  VADG+K+ L GFG+FE R RK R GRNP TGE +TI A TVP FSA KAFKEM
Sbjct:    1 MNKEQLVQATAIKAGVTKKQADLIISAICDSIMEAVADGEKVTLVGFGSFEARERKAREGRNPSTGEPMTIPATTVPVFSAGKAFKEM 88          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: A0A251WFF9_9CYAN (DNA-binding protein n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WFF9_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 3.060e-20
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKE 155
            + K  +I+ +AE+  +TK +A+A ++A  + VM  VA+G K+ L GFGTFE R R+ R GRNP+TG+ +TI A TVPAFSA KAFKE
Sbjct:    1 MNKGELIDAVAEQASVTKKEADAVISAMIETVMDAVANGDKVTLVGFGTFEPRERQAREGRNPQTGKSITIPATTVPAFSAGKAFKE 87          
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Match: A0A8J6R600_9CYAN (HU family DNA-binding protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6R600_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 5.180e-20
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 0
Query:   69 VRKTAVIEGMAERGDLTKVQAEAALAAFTDLVMSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAAKAFKE 155
            + K  +++ +AE+ ++TK QAEAAL A  D++ + VA G K+ L GFG+FE R R+ R GRNP+TGE +TI A  VPAFSA K FK+
Sbjct:    1 MNKGELVDAVAEKANVTKKQAEAALTAVFDVIQATVAAGDKVTLVGFGSFEARERQAREGRNPKTGEAMTIPATKVPAFSAGKLFKD 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig707.37.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST5_ECTSI5.970e-6270.37DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S1Y344_9STRA5.890e-2258.62Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A835Z9S8_9STRA1.220e-2151.61DNA-binding protein HU n=1 Tax=Tribonema minus Tax... [more]
A0A151ALX2_9CLOT9.180e-2155.68DNA-binding protein HU n=2 Tax=Clostridium TaxID=1... [more]
UPI000B59B4121.300e-2052.87HU family DNA-binding protein n=1 Tax=Leptolyngbya... [more]
UPI001684A9961.300e-2052.87HU family DNA-binding protein n=1 Tax=Pseudanabaen... [more]
UPI00199DAA8D1.830e-2054.02HU family DNA-binding protein n=2 Tax=Cyanobacteri... [more]
A0A1J1LMK7_9CYAN3.060e-2052.27DNA-binding protein HU n=13 Tax=Oscillatoriales Ta... [more]
A0A251WFF9_9CYAN3.060e-2052.87DNA-binding protein n=2 Tax=unclassified Alkalinem... [more]
A0A8J6R600_9CYAN5.180e-2051.72HU family DNA-binding protein n=3 Tax=unclassified... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000119Histone-like DNA-binding proteinPRINTSPR01727DNABINDINGHUcoord: 126..139
score: 62.25
coord: 142..156
score: 38.9
coord: 108..123
score: 44.72
IPR000119Histone-like DNA-binding proteinSMARTSM00411bhlneucoord: 69..158
e-value: 3.7E-24
score: 96.3
IPR000119Histone-like DNA-binding proteinPFAMPF00216Bac_DNA_bindingcoord: 70..156
e-value: 1.8E-24
score: 85.7
IPR000119Histone-like DNA-binding proteinPANTHERPTHR33175DNA-BINDING PROTEIN HUcoord: 71..157
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilyGENE3D4.10.520.10coord: 67..159
e-value: 9.7E-27
score: 95.0
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilySUPERFAMILY47729IHF-like DNA-binding proteinscoord: 70..156
NoneNo IPR availablePANTHERPTHR33175:SF3DNA-BINDING PROTEIN HU-BETAcoord: 71..157
NoneNo IPR availableCDDcd13831HUcoord: 71..155
e-value: 5.26174E-34
score: 113.64
IPR020816Histone-like DNA-binding protein, conserved sitePROSITEPS00045HISTONE_LIKEcoord: 114..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig707contigP-littoralis_Contig707:129337..140323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig707.37.1mRNA_P-littoralis_Contig707.37.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig707 129317..140358 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig707.37.1 ID=prot_P-littoralis_Contig707.37.1|Name=mRNA_P-littoralis_Contig707.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MKCSLLFALALRAQCGNAFVGPIGGLALSNCVSAAVGAQNGIVRRGVAST
PQARAAAASSADSEVSVVVRKTAVIEGMAERGDLTKVQAEAALAAFTDLV
MSNVADGKKINLQGFGTFEGRARKGRTGRNPRTGEELTIKAKTVPAFSAA
KAFKEMRRHPRTKKQGAADGSVVGWK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000119Hist_DNA-bd
IPR010992IHF-like_DNA-bd_dom_sf
IPR020816Histone-like_DNA-bd_CS