prot_P-littoralis_Contig688.14.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig688.14.1
Unique Nameprot_P-littoralis_Contig688.14.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length168
Homology
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.150e-37
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 0
Query:    1 MPWPFCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWVVQLQRKGEKQELQRATILDPDFSC 77
            MPWPFCPSCG+VLDPPESGDILCDHC LR SYESFGEVEVVT+SQ RA PEW+VQ+QRKGEKQELQRAT+ +    C
Sbjct:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKC 77          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 2.520e-8
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWVVQLQRKGEKQELQRATILDPDFSC 77
            FCP CGT+LD P++ +I+C  C  R +YE+   + VVT S+ + +P+W+   Q   E +   RAT+ +    C
Sbjct:   14 FCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKC 86          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-7
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWV 53
            FCP CGT+LD P++ +I+C  C  R  Y+    + VVT+S+ R LP+W+
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWL 65          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 55.5 bits (132), Expect = 7.540e-7
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWVVQLQRKGEKQELQRATILDPDFSC 77
            FCP CGT+LD PE+ +I+C  CG    Y+    +  VT S+ R  P+WV       E     RAT+ +P   C
Sbjct:   16 FCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKNAIVSQEVTGPARATVEEPCPKC 88          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 53.5 bits (127), Expect = 4.080e-6
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWV 53
            FCP CGT+LD P++ +I+C  C  R  YE F  +  +T S+ R  P+W+
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEHRCRYEDFPSLTFITYSEDRPKPKWL 65          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: K3X016_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X016_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 5.470e-6
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWV 53
            FCP CGT+LD P++ +I+C  C  R  Y+    + VVT S+ +  P+W+
Sbjct:   15 FCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTYSEDKPAPKWL 63          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: A0A7R9UDQ0_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDQ0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-5
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 0
Query:    3 WPFCPSCGTVLDPPESGDILCDHCGLRTSYESFGE-VEVVTKSQARALPEWVVQLQRKGEKQELQRATILDPDFSC 77
            WPFCPSCG++L  P  GD+ C  C      E      ++VTKS  RA P W+  LQ + E    +RA + +    C
Sbjct:   50 WPFCPSCGSMLQLPSEGDLKCGMCAWGCRMEVLARSFKLVTKSPPRAPPAWL--LQEEQEDVNKRRAKVDEACLKC 123          
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Match: A0A5D6YB84_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB84_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.360e-5
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALPEWV 53
            FCP CGT+LD P++ +I+C  C  R  Y+    + VVT S+ +  P+W+
Sbjct:  307 FCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTFSEDKPAPKWL 355          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig688.14.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LL81_ECTSI1.150e-3780.52DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A2D4BKP7_PYTIN2.520e-836.99DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A0N7L402_PLAHL2.020e-744.90DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A067CLZ5_SAPPC7.540e-738.36DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A484EDY4_BRELC4.080e-642.86DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
K3X016_GLOUD5.470e-640.82DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A7R9UDQ0_9STRA1.040e-538.16DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A5D6YB84_9STRA5.360e-540.82DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig688contigP-littoralis_Contig688:33068..38886 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig688.14.1mRNA_P-littoralis_Contig688.14.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig688 32380..39134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig688.14.1 ID=prot_P-littoralis_Contig688.14.1|Name=mRNA_P-littoralis_Contig688.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
MPWPFCPSCGTVLDPPESGDILCDHCGLRTSYESFGEVEVVTKSQARALP
EWVVQLQRKGEKQELQRATILDPDFSCARAVLAQKLLCTGERPQECFRWR
RRVQSAAIPRWSSTPCSCDRPTRGRLFFTNVYQRLASTSTRSTTKKRRII
VRWCALSKDEKCSGLIC*
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