prot_P-littoralis_Contig643.33.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig643.33.1
Unique Nameprot_P-littoralis_Contig643.33.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length478
Homology
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BLAST of mRNA_P-littoralis_Contig643.33.1 vs. uniprot
Match: D7FR64_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR64_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.490e-24
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 0 
Query:  151 PSTPVAFRGENCTICLSPLHRSGRSQEQQREVYTIRNCQHNFHRECLATNRAAGRTTCPCCRGEVERGLTPEPVRQSER 229
            P TP  + GE+C ICLSPL R G S   +R VYTIR C+HNFHR+CL  NRA GRTTCPCCRGE+ERGL+P P R++E+
Sbjct:   71 PPTPEPYGGEDCAICLSPLRRPGGSVP-ERPVYTIRACEHNFHRDCLVANRAEGRTTCPCCRGEIERGLSPAPTRRAEQ 148
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BLAST of mRNA_P-littoralis_Contig643.33.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.520e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 0 
Query:  153 TPVAFRGENCTICLSPLHRSGRSQEQQREVYTIRNCQHNFHRECLATNRAAGRTTCPCCRGEVERGLTPEPVRQSERA 230
            T  A RG +C ICLSPL +   +++   EVYT+R CQH FHR CL  NR AG T CP CRG++ERGLTPE      +A
Sbjct:   93 TTPACRGGSCAICLSPLKKPSGAKK---EVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKA 167
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BLAST of mRNA_P-littoralis_Contig643.33.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.530e-13
Identity = 40/78 (51.28%), Postives = 45/78 (57.69%), Query Frame = 0 
Query:  161 NCTICLSPLHRSGRSQEQQR---EVYTIRNCQHNFHRECLATNRAAGRTTCPCCRGEVERGLTPEPVRQSERAEAEAQ 235
            +C ICL PL  S +         EVY I+ C H FHR CLA NR AG   CPCCRG +ERGLTP P     RA A+ Q
Sbjct:   32 DCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQ 109
[Close]
BLAST of mRNA_P-littoralis_Contig643.33.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.110e-12
Identity = 40/78 (51.28%), Postives = 45/78 (57.69%), Query Frame = 0 
Query:  161 NCTICLSPLHRSGRSQEQQR---EVYTIRNCQHNFHRECLATNRAAGRTTCPCCRGEVERGLTPEPVRQSERAEAEAQ 235
            +C ICL PL  S +         EVY I+ C H FHR CLA NR AG   CPCCRG +ERGLTP P     RA A+ Q
Sbjct:  207 DCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig643.33.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR64_ECTSI3.490e-2464.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHS7_9PHAE5.520e-1653.85RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G207_ECTSI1.530e-1351.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE1.110e-1251.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 330..357
NoneNo IPR availableCOILSCoilCoilcoord: 400..427
NoneNo IPR availableCOILSCoilCoilcoord: 224..251
NoneNo IPR availableCOILSCoilCoilcoord: 366..393
NoneNo IPR availableCOILSCoilCoilcoord: 308..328
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..142
NoneNo IPR availableCDDcd16448RING-H2coord: 162..212
e-value: 2.56083E-8
score: 47.8319
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 161..218
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 162..211
e-value: 9.8E-5
score: 31.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 161..212
e-value: 2.2E-6
score: 27.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 162..212
score: 11.205767
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 140..252
e-value: 3.4E-10
score: 41.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig643contigP-littoralis_Contig643:140110..148828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig643.33.1mRNA_P-littoralis_Contig643.33.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig643 139969..150103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig643.33.1 ID=prot_P-littoralis_Contig643.33.1|Name=mRNA_P-littoralis_Contig643.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=478bp
MDDNGGHATRSVTRAAAAARPSRTRTLTPRAAAWSQTLAARSRAAAAAGT
NSAVAAATSSGGPSRPRTAVTRAAAGPSVSGVRRRPPALTIEPPAASSAE
EDSAEENSAEEDSAEEGGEEEGSDEEDSAEEGSDEEGSGAEESSAEESSR
PSTPVAFRGENCTICLSPLHRSGRSQEQQREVYTIRNCQHNFHRECLATN
RAAGRTTCPCCRGEVERGLTPEPVRQSERAEAEAQRQVERVMARAQREEE
AEREPFRRQAPWDDRPWREDETRGLGFAIPRRDGRRREDPASAIRPSARQ
QSWEEDRRARQEQAAEHAEREAEVIARRRAAEHARRQEQARRERRRQEEE
DEHARRREEAERGRRREVANRARREAAREAREARRAVEARRERRERHFRL
ESLRNLVRAKRTARRAAEEALTKAQEEAHERVRAALDEAAAMLSTAKGAV
DSTRTEERAAKRLLLDEMRMFGSPSRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD