prot_P-littoralis_Contig200.85.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig200.85.3
Unique Nameprot_P-littoralis_Contig200.85.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length362
Homology
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 675 bits (1741), Expect = 2.290e-244
Identity = 328/361 (90.86%), Postives = 345/361 (95.57%), Query Frame = 0
Query:    1 MLGRVTKYRVNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESGVDFDEAMP 361
            MLGRVTKYRV NDAPSEVFEA SEQERKDRLLLSY ERV K LDVKAVQ G G  NELVFDLVG+DASIANALRRILLAEVATVAIEHVYM+MNSSIIHDEILAHRLGL+PIMANPRMFEFVGE GGE D+PTEFNTCVFKLEVKNP+DPADMPDPMP GTSYAAGPRRTMNVFSGAMEWCPHGDQ ERFEGEGG+RPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPV+TL+EE+EG++AE+LVAKCPL+VFDIEDLGG  KRAKVARPRDCTMCRECIREPGWS+K+SLSR+ADHFIFG+ESVGMLPPKELLKDSIQVLRQKC SMIAEVEAFESGVDFDEAMP
Sbjct:    1 MLGRVTKYRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFVGEEGGEQDEPTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFESGVDFDEAMP 361          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 577 bits (1487), Expect = 1.220e-205
Identity = 290/363 (79.89%), Postives = 313/363 (86.23%), Query Frame = 0
Query:    1 MLGRVTKYRVNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCV-FKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFS-GAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESGVDFDEAMP 361
            MLGRVTKYRV NDAPSEVFEA SEQERKDRLLLSY ERV K LDVKAV+ G G KNELVFDLVG+DASIANALRRILLAEVATVAIEHVYM+MNSSIIHDEILAHRLGL+PIMANPRMFEFVG+ GGE D+ T+    V  +   + P  P     P   G     G          GAMEWCPHGDQ ERFEGEGG+RPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPV+TL++E+EG++AE+LVAKCPL+VFDIEDLGG  KRAKVARPRDCTMCRECIREPGWS+K+SLSR+ADHFIFG+ESVGMLPPKELLKDSIQVLRQKC SMIAEVEAFESG+DFDEAMP
Sbjct:    1 MLGRVTKYRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFVGDEGGEQDEATDGVQHVRVQAGGEKPGGPGGHAGPYADGYELCGGAATDHERLQVGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFESGIDFDEAMP 363          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A7S2UWR1_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWR1_9STRA)

HSP 1 Score: 341 bits (875), Expect = 4.600e-112
Identity = 189/386 (48.96%), Postives = 245/386 (63.47%), Query Frame = 0
Query:    2 LGRVTKYRVNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFV---------GETGGE--PDDPTEFNTCVFKLEVK--------------------NPSDPADMP---DPMPKGTSYAAGPRR--TMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFE 351
            L  V+ Y +  DAP E F        K      Y E V K L ++  +    D  +L+FD+ GID SIANALRRILLAEV ++AIEHVY++ NSSI+HDE+LAHRLGLVPI+A P  FE+          G+ GGE   DDPT+ NT VFKL+VK                    N ++  D+    D   +G       +R  TM V+SG ++W P G QEER  G+   + V DDI++AKLRPGQ+IV E HCRKG+GKDHAK+SPVATA YR+LP IT  +++ G DAE L  KCP+ VFDIEDL GG +RA  +RPRDCTMCRECIR P   +KISL R+ADHFIF VE+VG+  P+++ K++I++L+ K +  I E+E  +
Sbjct:   28 LMAVSSYHLKTDAPHESFSV------KPNKTTDYVESVAKKLHIEIQKL---DDEQLIFDISGIDVSIANALRRILLAEVPSMAIEHVYVWANSSILHDEVLAHRLGLVPILAPPEEFEWFTRRKGGAEDGDEGGEGEEDDPTDLNTLVFKLDVKYNRHAAVKQQRRQKRLGPRANGAEEMDVDSTSDGEEEGPVEGGQRKRPPTMTVYSGDLQWEPQGGQEERLAGKE-PKAVVDDIILAKLRPGQQIVLEAHCRKGVGKDHAKYSPVATAFYRMLPRITFSQDVTGEDAEVLEKKCPMKVFDIEDLAGGGRRAVASRPRDCTMCRECIRTPPGDQKISLERVADHFIFSVETVGVTKPEKIFKEAIKMLKTKSLDFIEEIEQLQ 403          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 337 bits (865), Expect = 3.130e-111
Identity = 180/356 (50.56%), Postives = 241/356 (67.70%), Query Frame = 0
Query:    5 VTKYRVNNDAPSEVFE-----ADSEQER--KDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESG 353
            + +Y+V N   SE F+     AD+   R   DRLL       G  ++V         + ELVFDL+G+DAS+ANALRRI+LAEV T+AIE+VY+ MNS +IHDE+LAHRLGLVPI  +PR+F+         D+    NT VF L+V+     +   D  P G++       TM+V+S  ++W P  DQ E F    G+RPVH+DIL+AKLRPGQ I  E HC++G+GKDHAKFSPVATASYRLLP I + +E++G  AE L A CP++VFDIEDLGG  +RA  ARPRDCTMCRECIR+ GW E++ L R ADH+IF VE+VGML P++++K++I++LR+KC   + E++   +G
Sbjct:    9 IRRYQVKNQGVSEEFQPVSAAADASVHRPFSDRLL------EGMRIEVM-----ESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRLGLVPIQVDPRLFK----DKVPQDEINSKNTVVFGLDVQC----SRSADTRPPGSTEPY----TMSVYSKHLQWLPQADQAEEFPD--GIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGG-ERRATAARPRDCTMCRECIRQEGWDERVKLYRAADHYIFKVEAVGMLAPRDIVKEAIRILREKCTDFLGELQGDPAG 338          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.990e-109
Identity = 188/357 (52.66%), Postives = 240/357 (67.23%), Query Frame = 0
Query:   10 VNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESGV------DFDEAM 360
            V  DAP  V + +SE         ++ +   K L VK +Q  + D  E+VFDL+GIDASIANA RRILLAEV T+AIEHVY++ NSSII DE+LAHRLGL+P+  +PR F+   E   E  + T+ NT VFKL+V   +DP+D P+ + K T+ +        V+S  +EW P G QEERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP IT    + G DA+ L   CP++VFDIEDL      A  ARPR+CTMCRECIR PGWS+K+ + R++DHFIF VE+VGMLPP++LL ++I+VL  KC   +  + A +  +      D D+AM
Sbjct:    8 VGLDAPH-VPDTESESSH------AFVDNFKKQLKVK-IQSLTDD--EIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEH--EEGEATDENTLVFKLDVTCTADPSD-PNDISKATNAS--------VYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIEDLA-----AVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAKCDVAVESLNAVDDELRENADEDEDDAM 335          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A6G0XIR3_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIR3_9STRA)

HSP 1 Score: 331 bits (848), Expect = 4.470e-109
Identity = 170/306 (55.56%), Postives = 217/306 (70.92%), Query Frame = 0
Query:   55 KNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESGVDFDEAM 360
            + ++VFD++GIDASIANA RRILLAEV T+AIEHVY++ NSSII DE+LAHRLGL+P+  +PR F+   E   E  + T+ NT VFKL+V   +DP D PD + K T+ +        ++S  +EW P G QEERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP I     + G DA+ L   CP++VFDIED+      A  ARPR+CTMCRECIR PGWS+K+ L R++DHFIF VE+VGMLPP++LL ++++VL  KC   +  + A +  +  DE M
Sbjct:   43 EEDIVFDVIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEL--EEGEATDENTLVFKLDVTCTADPDD-PDDISKATNSS--------IYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPVTGADAKTLQKTCPMNVFDIEDMA-----AVAARPRNCTMCRECIRAPGWSDKVELGRVSDHFIFSVETVGMLPPEDLLPEALKVLMTKCDVAVESLNAMDDELAEDETM 329          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A1V9ZSM6_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSM6_9STRA)

HSP 1 Score: 328 bits (842), Expect = 4.720e-108
Identity = 185/352 (52.56%), Postives = 232/352 (65.91%), Query Frame = 0
Query:    9 RVNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESGVDFDEAM 360
            R+  DAP      D+E E  +R L S+     KN  +K  Q    D   +VFD +GIDASIANA RRILLAEV T+AIEHVY++ NSSII DE+LAHRLGL+P+  +PR F+   E   E  + T+ NT VFKL+V   +D  D P+ + K T+ +        V+S  +EW P G QEERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP I     I+G+DA+ L   CP++VFDIED       A VARPRDCTMCRECIR PGW EK+ L R++DHFIF VE+VGML P+ELL ++++VL  KC   +  + + +  +  D  M
Sbjct:    7 RIGTDAP---HMPDTECEATERFLESFK----KNFKIKIQQLTDED---IVFDAIGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSFPEH--EEAEATDENTLVFKLDVVCEADKDD-PEDISKATNAS--------VYSRHLEWIPQGMQEERF---GNIRPVSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIED-----SHAVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESLNSIDDELTNDVDM 329          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 328 bits (841), Expect = 9.630e-108
Identity = 183/307 (59.61%), Postives = 217/307 (70.68%), Query Frame = 0
Query:   35 YPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVA-KCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKC 340
            Y E++ K + VK +Q  S  + E+VFDL+G+DASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRLGLVP+  +PR  EF      E  + T+ NT VFKL+V    DPA   D        AA    T +V+S  +EW P G+QEERF   G +RPVH+DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P I L + + G DA  LVA KC L VFDIEDLGG    A V   R C MCRECIREPGW EKI L R++DHFIF VESVGM+ P+ELL +++ VL  KC
Sbjct:   30 YVEQLKKQVKVK-IQ--SLSEEEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPR--EFQAFPDNEEAEATDENTIVFKLDVTCRFDPAHPQD--------AAKALHT-SVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIEDLGGVDT-AVVKDARSCNMCRECIREPGWDEKIKLGRVSDHFIFSVESVGMIKPEELLPEALNVLVDKC 318          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 327 bits (837), Expect = 4.010e-107
Identity = 188/350 (53.71%), Postives = 234/350 (66.86%), Query Frame = 0
Query:    9 RVNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQPGSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAFESGVDFDE 358
            RV  DAP  V  A + +     L   + E+  + + VK +Q  + D  E+ FDL+G+DASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRLGLVP+  +PR  EF      E  + T+ NT VFKL+V    DPA      PK  S A       +V+S  +EW P G+QEERF   G +RPVH+DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P + L E +EG DA+ LV +C + +FDIED+GG    A V   R CTMCR CIREPGW+EKI L R +DHFIF VESVGM+ P+ELL +++ VL +KC      +E+F    + DE
Sbjct:   11 RVGQDAPHVVRNAAAFES----LGSDFVEQSKRQVKVK-IQSLTDD--EIQFDLMGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLRVDPR--EFQAFPDHEEAEATDENTIVFKLDVTCAYDPAH-----PKDLSKAVH----ASVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQMGLFDIEDMGG-VPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLPEALNVLMEKCN---VALESFNQTDEDDE 335          
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL)

HSP 1 Score: 324 bits (830), Expect = 3.890e-106
Identity = 169/286 (59.09%), Postives = 207/286 (72.38%), Query Frame = 0
Query:   55 KNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHDEILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDPADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEEIEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGWSEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKC 340
            ++ ++FDL+GIDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRLGLVP+  +PR  EF G +  E  + T+ NT VFKL+V    DP    DP     S         +V+S  +EW P G+QEERF   G +RPVHDDILIAKLRPGQ +  E HCRKGIGKDHAKFSPVATASYRL+P + L E+IEG DA  L+  CP+++FDIED+GG  +   V   R CTMCR CIREPGW +KI L R ADHFIF +ESVGM+ P+ELL +++ VL  KC
Sbjct:   45 EDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPR--EFQGFSDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIFS---------SVYSRDLEWVPQGNQEERF---GLIRPVHDDILIAKLRPGQSLALEAHCRKGIGKDHAKFSPVATASYRLMPKVELSEKIEGADAVSLMENCPVNLFDIEDVGG-VQSIVVKDQRACTMCRNCIREPGWDKKIRLGRQADHFIFSIESVGMIKPEELLLEALNVLVNKC 315          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.85.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI2.290e-24490.86DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE1.220e-20579.89DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2UWR1_9STRA4.600e-11248.96DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2RJI0_9STRA3.130e-11150.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024TZC9_9STRA1.990e-10952.66DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6G0XIR3_9STRA4.470e-10955.56DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A1V9ZSM6_9STRA4.720e-10852.56DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA9.630e-10859.61DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A662X4Y9_9STRA4.010e-10753.71DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A0P1AUD4_PLAHL3.890e-10659.09DNA-directed RNA polymerases I and III subunit RPA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 57..346
e-value: 3.5E-89
score: 312.2
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 60..340
e-value: 1.0E-22
score: 80.3
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 89..232
e-value: 1.9E-26
score: 92.6
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 83..229
e-value: 3.2E-105
score: 353.5
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 83..233
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 53..339
e-value: 3.2E-105
score: 353.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 52..349
IPR033901DNA-directed RNA polymerases I and III subunit AC40PANTHERPTHR11800:SF13DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1coord: 37..350
IPR033901DNA-directed RNA polymerases I and III subunit AC40CDDcd07032RNAP_I_II_AC40coord: 54..346
e-value: 4.30732E-144
score: 407.75
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 37..350
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved sitePROSITEPS00446RNA_POL_D_30KDcoord: 71..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:274578..279843 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.85.3mRNA_P-littoralis_Contig200.85.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig200 273515..279952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig200.85.3 ID=prot_P-littoralis_Contig200.85.3|Name=mRNA_P-littoralis_Contig200.85.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=362bp
MLGRVTKYRVNNDAPSEVFEADSEQERKDRLLLSYPERVGKNLDVKAVQP
GSGDKNELVFDLVGIDASIANALRRILLAEVATVAIEHVYMYMNSSIIHD
EILAHRLGLVPIMANPRMFEFVGETGGEPDDPTEFNTCVFKLEVKNPSDP
ADMPDPMPKGTSYAAGPRRTMNVFSGAMEWCPHGDQEERFEGEGGVRPVH
DDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVITLEEE
IEGRDAEDLVAKCPLDVFDIEDLGGGSKRAKVARPRDCTMCRECIREPGW
SEKISLSRIADHFIFGVESVGMLPPKELLKDSIQVLRQKCVSMIAEVEAF
ESGVDFDEAMP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR036643RNApol_insert_sf
IPR036603RBP11-like
IPR033901RNAPI/III_AC40
IPR001514DNA-dir_RNA_pol_30-40kDasu_CS