prot_P-littoralis_Contig197.28.7 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig197.28.7
Unique Nameprot_P-littoralis_Contig197.28.7
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length134
Homology
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.790e-44
Identity = 78/131 (59.54%), Postives = 99/131 (75.57%), Query Frame = 0
Query:    8 DGDGGEEYDVFANEDDDPQVDEPAPLDPDPADMEIIDAGEAGGAG------RSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIM 132
            DGD  + YD FA++ D+   +E A        +E+++A E GGA       + A +RIT+KYMTKYE+ARILGTRALQISMNAP+MVD+E+ TDPLKIA KELRERKIP+KIRRYLPDGS+EDW + EL++
Sbjct:    4 DGDHADAYDAFADDGDEDMQEEVADEVGQAGQLELMEADETGGAAPGAPPVKPAQERITSKYMTKYEKARILGTRALQISMNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWALEELMI 134          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.640e-44
Identity = 82/133 (61.65%), Postives = 99/133 (74.44%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPAPLDPDPADMEIIDAGEAGGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            M  ++ G G G E+ DV    DD+ Q D  A  +    D E++ +   GG G +  +R+TTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIP+ IRRYLPDGSHEDW I ELI+D
Sbjct:   30 MGADDGGRGGGNEDLDVTGERDDNAQEDMNAANNE--GDGELLGSSAPGG-GATGAERVTTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.560e-42
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 0
Query:   39 DMEIIDAGEAGGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            D+E++ +   GG   S  +R+TTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIP+ IRRYLPDGSHEDW I ELI+D
Sbjct:   69 DLELLGSSAPGG---SRAERVTTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 142 bits (358), Expect = 6.650e-42
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0
Query:   58 RITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            RITT+Y+TKYERAR+LGTRALQISMNAPVMVD+E ETDPLKIA KELRERKIP+ IRRYLPDGSHEDWGI ELI+D
Sbjct:    1 RITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.920e-42
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 0
Query:   39 DMEIIDAGEAGGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            D+E++ +   GG    A +R+TT+Y+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIP+ IRRYLPDGSHEDW I ELI+D
Sbjct:  107 DLELLGSAAPGGG---AAERVTTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A6S9M2J6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M2J6_HETAK)

HSP 1 Score: 144 bits (363), Expect = 9.620e-42
Identity = 81/140 (57.86%), Postives = 102/140 (72.86%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQV-------DEPAPLDPDPADMEIIDAGEAGGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            M + +Y DGD G  Y+ F +E+  P+V       D+   LD     +E+++  E     +  ++RITTKYMTKYERARILGTRALQISMNAPVMVDIE ETDPL+IAMKELRE+KIP+ +RRYLPDGS+EDWG  ELI++
Sbjct:    1 MEEEDY-DGDEGNAYEAFIDEE--PEVMEEAGEGDDEEALDDGKPKVELLEQTEQQAIKQ--ENRITTKYMTKYERARILGTRALQISMNAPVMVDIEGETDPLRIAMKELREKKIPIIVRRYLPDGSYEDWGADELIVE 135          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A6U3VZ54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VZ54_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.060e-41
Identity = 68/98 (69.39%), Postives = 84/98 (85.71%), Query Frame = 0
Query:   39 DMEIIDAGEA---GGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            D+ +++ GE    G +G +  +R+TT+Y+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAM+ELRERKIP+ IRRYLPDGSHEDW I ELI+D
Sbjct:   99 DVNVMNEGEMEILGSSGSALSERVTTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMRELRERKIPIIIRRYLPDGSHEDWKIDELIVD 196          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: D8LKY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.130e-41
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPAPLDPDPADMEIIDAGEAGGAG-RSADDRITTKYMTKYERARILGTRALQI 80
            MSDNEYGDGDGGEEYDVFANEDDDPQVDEP PL+ DPADME++DA +AGGAG RSADDRITTKYMTKYERARILGTRALQI
Sbjct:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPTPLEADPADMEVVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQI 81          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 144 bits (362), Expect = 1.280e-41
Identity = 82/146 (56.16%), Postives = 100/146 (68.49%), Query Frame = 0
Query:    1 MSDNEYGDGDGG---EEYDVFANEDDDPQVDEPAPLDPDPADMEII----------DAGEAGGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            MSD+E   G GG    E  VF  EDD P+  E   L  D   +++           +  E GG   +A +RITT+Y+TKYE+AR+LGTRALQISMNAPVMVD++ ETDPLKIA KELRERKIP+ IRRY+PDGSHEDW + ELI+D
Sbjct:    1 MSDDEDPIGSGGGFDNEGGVF--EDDQPEAAEDDELQSDDEGLDVTGEHTSIVGVGEGSEGGGRSVAAAERITTRYLTKYEKARVLGTRALQISMNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWAVDELIVD 144          
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Match: A0A7C9CIH7_OPUST (DNA-directed RNA polymerase n=4 Tax=Caryophyllales TaxID=3524 RepID=A0A7C9CIH7_OPUST)

HSP 1 Score: 143 bits (361), Expect = 1.710e-41
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 0
Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPAPLDPDPADMEIIDAGEAGGAGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPMKIRRYLPDGSHEDWGIAELIMD 133
            M+D++Y D D G E +    E ++ + DE    D D  D  +++  E  G G+    R T+KYMTKYERARILGTRALQISMNAPVMV++E ETDPL+IAMKELR+RKIP  IRRYLPDGS+EDWG+ ELI++
Sbjct:    1 MADDDYNDVDMGYEEEPPEPEIEEGEEDENVQQDEDVNDP-LLEGEEKEGDGKEHKQRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSYEDWGVDELIVE 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.28.7 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH45_9STRA1.790e-4459.54DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
A0A7R9ZBL4_9STRA2.640e-4461.65Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2E4M0_9STRA2.560e-4273.68Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B8C3F5_THAPS6.650e-4286.84Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A6U0JRN7_9STRA7.920e-4272.63Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6S9M2J6_HETAK9.620e-4257.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U3VZ54_9STRA1.060e-4169.39Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D8LKY3_ECTSI1.130e-4190.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JVB2_FISSO1.280e-4156.16DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7C9CIH7_OPUST1.710e-4158.65DNA-directed RNA polymerase n=4 Tax=Caryophyllales... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 128..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availablePANTHERPTHR47227DNA-DIRECTED RNA POLYMERASE SUBUNIT Kcoord: 38..130
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6SMARTSM01409RNA_pol_Rpb6_2coord: 58..111
e-value: 3.7E-6
score: 36.5
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 58..110
e-value: 7.2E-14
score: 51.5
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 2..133
e-value: 1.3E-45
score: 156.5
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 10..133
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..133
e-value: 3.7E-45
score: 151.3
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Kcoord: 62..117
score: 18.648378
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..133
e-value: 2.6E-48
score: 161.7
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 65..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:168785..171765 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.28.7mRNA_P-littoralis_Contig197.28.7Pylaiella littoralis U1_48mRNAP-littoralis_Contig197 168141..171850 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig197.28.7 ID=prot_P-littoralis_Contig197.28.7|Name=mRNA_P-littoralis_Contig197.28.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MSDNEYGDGDGGEEYDVFANEDDDPQVDEPAPLDPDPADMEIIDAGEAGG
AGRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIA
MKELRERKIPMKIRRYLPDGSHEDWGIAELIMD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/Rpo6/RPB6
IPR036161RPB6/omega-like_sf
IPR006111Rpo6/Rpb6
IPR028363RPB6
IPR020708DNA-dir_RNA_polK_14-18kDa_CS