prot_P-littoralis_Contig192.34.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig192.34.2
Unique Name	prot_P-littoralis_Contig192.34.2
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	506

Homology

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A6H5JUS6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUS6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.380e-51
Identity = 149/278 (53.60%), Postives = 168/278 (60.43%), Query Frame = 0

Query:   94 GRDYEQVPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRGYGDGGFXXXXXTGGRQGGGGFRQXXXXXXXXXXXXXXGQDRGYERRGYGYGXXXXXXRDGQSSGEGQPGFDSFTS--------------RRREDRGGQGGGSQDGPIGAGGPDVPAGSEAPPSSGRRKLNLVPRTKPA-GQAAAAA--PAPASTKKASIFGGGKAHDEFAYEKAKA-SRPA 353
            GR+YE+VPVPDAPPYKAL+GNLPYS +EN+IA+ F  C  +DD+YLVKDR TG  KG+GYVTF DK  LL AL+MT   L  R++RVEVAKPQ                     GGG R+XXXXXXXXXXXXXX         GY                +G  G D +                R+REDRG  GGG QDGPIGAG  DV             +L L PR+KPA GQAAA A  PAPAS+KKASIFGGGKAHDEFAYEKAKA SRPA
Sbjct:   70 GREYEEVPVPDAPPYKALVGNLPYSAHENDIADFFHQCR-VDDVYLVKDRTTGQAKGFGYVTFGDKQSLLDALKMTQRNLGGRDVRVEVAKPQR--------------------GGGNRRXXXXXXXXXXXXXXXXXXXXXXXGY---------------RQGXSGRDDYXXXXXXXXXXXXXXXXRQREDRGSSGGGGQDGPIGAGXXDVXXXXXXXXXXXXXRLKLAPRSKPATGQAAAGAAXPAPASSKKASIFGGGKAHDEFAYEKAKAASRPA 311

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A5J5ERQ5_9PEZI (RRM domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5ERQ5_9PEZI)

HSP 1 Score: 90.1 bits (222), Expect = 1.420e-15
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0

Query:  100 VPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRG 190
            VP+PD PPY A +GNL + V E EI++ FA C  + ++ LV+DR+   PKG+GYV F  + GLL ALE+ G  L  RN+R+ VA+P   RG
Sbjct:   83 VPIPDHPPYTAHVGNLSFDVTEGEISDFFASCE-VSNVRLVRDREQDRPKGFGYVEFSTRDGLLAALELNGKQLAGRNVRISVAEPAKDRG 172

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A3N4KIL9_9PEZI (RNA-binding domain-containing protein n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KIL9_9PEZI)

HSP 1 Score: 89.0 bits (219), Expect = 3.670e-15
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0

Query:   98 EQVPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRG 190
            EQ+P+PD PP+ A +GNL + V ENEI+  F  C  + ++ LV+D+    PKG+GYV F  K GL+ A+E+ G  L  RN+R+ VA P   RG
Sbjct:   79 EQLPIPDKPPFTAHVGNLSFDVSENEISEFFEKCD-VSNVRLVRDKMEDRPKGFGYVEFNTKEGLIAAMELNGSQLSGRNIRINVADPPKDRG 170

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A4S2MVD5_9PEZI (RNA-binding domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MVD5_9PEZI)

HSP 1 Score: 87.0 bits (214), Expect = 1.440e-14
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0

Query:   99 QVPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRR 189
            Q+PVPD PP+ A +GNL + + E EI + F  C  + ++ LV+DR+   PKG+GYV F  K GLL+AL+M G  L  RN+RV VA+P   R
Sbjct:   66 QLPVPDKPPFTAHIGNLTFEITEAEIEDFFVGCE-VSNVRLVRDREQDRPKGFGYVEFATKDGLLKALDMNGGQLAGRNVRVNVAEPPKER 155

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: U4LS89_PYROM (Similar to Probable RNA-binding protein sce3 acc. no. O14369 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LS89_PYROM)

HSP 1 Score: 84.7 bits (208), Expect = 6.300e-14
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query:  100 VPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRR 189
            +P+PD PPY   +GNL +SV E EI   FA C  L+ + LV+DR+   PKG+GYV F  + GL+ AL++TG  L  R +R+ VA+P   R
Sbjct:   91 LPIPDKPPYTTHIGNLDFSVSEEEIKGFFANCDVLN-VRLVRDREQDRPKGFGYVEFNSREGLVAALDLTGQNLAGRPVRISVAEPPKER 179

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A849I1E0_9GAMM (RNA-binding protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849I1E0_9GAMM)

HSP 1 Score: 77.0 bits (188), Expect = 1.140e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 0

Query:  109 KALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRGYGDGG 195
            K  +GNLP+ +   ++ + FA  G + D++LVKDRDTG  KG+G++TF D +    ALEM       RNL+V +AK +  RG G GG
Sbjct:    4 KIYIGNLPFKLEPADLRSAFARFGEITDLFLVKDRDTGRLKGFGFITFADASSAQAALEMNEQEFGGRNLKVSIAKERDDRGEGGGG 90

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: W4H629_9STRA (RRM domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H629_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.680e-13
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 0

Query:   98 EQVPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRGYGDGGFXXXXXTGGRQGGGGFR 212
            E++PVPD  P+K+ +GNLPYSV E+++A+ FA C  + +I +  D +T  PKG+ YV F+D+  L+ ALE  G  ++ R +RV+VA  + + G  D GF        R GGGG R
Sbjct:   80 EKLPVPDYGPFKSYVGNLPYSVQEDDLADFFAGCA-IKEIRIPIDYNTNRPKGFAYVEFEDRNSLVHALEFDGQTVNQRAIRVDVAG-ERKGGRQDNGFFQK-----RDGGGGDR 187

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A3N4KGI1_9PEZI (RNA-binding domain-containing protein n=1 Tax=Morchella conica CCBAS932 TaxID=1392247 RepID=A0A3N4KGI1_9PEZI)

HSP 1 Score: 80.5 bits (197), Expect = 2.240e-13
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 0

Query:   98 EQVPVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTR 188
            E  P+PD PPY A +GNL + +   EI++ F+ C  +  + LV+D+    PKG+GYV F  K GL+ A E+ G+ +  RN+RV +A+P+ +
Sbjct:  158 EITPIPDNPPYTAHIGNLSFDIEVQEISDFFSECD-VKTVRLVRDKPNDRPKGFGYVEFNAKEGLIAATELNGVKVCGRNIRVNIARPRKK 247

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: K3XBL0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBL0_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 1.350e-12
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0

Query:  101 PVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRGYGDGGF 196
            PVPD PPYK  +GNLP+ ++E+E+A+ F    G+ DI   KD DT  PKG+ YV F D+  L++ALE+ G  +  R ++++VA  +  R    GGF
Sbjct:  124 PVPDHPPYKIFVGNLPFRMHEDELAD-FLGHEGIRDIRFPKDFDTNRPKGFAYVEFDDREALVRALELDGHDVDGRAVKIDVAAEKNPRQDKSGGF 218

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BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Match: A0A139AS84_GONPJ (RNA-binding domain-containing protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AS84_GONPJ)

HSP 1 Score: 80.5 bits (197), Expect = 1.390e-12
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 0

Query:  101 PVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKGYGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQ 186
            PVP+ PPY A LGNLPY V+E ++   F P   L  + LVKDR++G  KGYGYV F+++  L  A+   G     R +R++VA+P+
Sbjct:   61 PVPNNPPYTAFLGNLPYDVHEEDLREFFHPLK-LRSVRLVKDRESGQSKGYGYVEFEERGDLEMAVSDGGADFKGRRVRIDVAEPK 145

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig192.34.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUS6_9PHAE	3.380e-51	53.60	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A5J5ERQ5_9PEZI	1.420e-15	49.45	RRM domain-containing protein n=1 Tax=Sphaerospore...	[more]
A0A3N4KIL9_9PEZI	3.670e-15	46.24	RNA-binding domain-containing protein n=3 Tax=Morc...	[more]
A0A4S2MVD5_9PEZI	1.440e-14	48.35	RNA-binding domain-containing protein n=1 Tax=Asco...	[more]
U4LS89_PYROM	6.300e-14	46.67	Similar to Probable RNA-binding protein sce3 acc. ...	[more]
A0A849I1E0_9GAMM	1.140e-13	43.68	RNA-binding protein n=1 Tax=Legionellales bacteriu...	[more]
W4H629_9STRA	1.680e-13	42.61	RRM domain-containing protein n=4 Tax=Aphanomyces ...	[more]
A0A3N4KGI1_9PEZI	2.240e-13	40.66	RNA-binding domain-containing protein n=1 Tax=Morc...	[more]
K3XBL0_GLOUD	1.350e-12	43.75	RRM domain-containing protein n=1 Tax=Globisporang...	[more]
A0A139AS84_GONPJ	1.390e-12	45.35	RNA-binding domain-containing protein (Fragment) n...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..181 e-value: 9.0E-18 score: 75.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 112..179 e-value: 6.6E-14 score: 51.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 108..185 score: 16.073748
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 86..202 e-value: 2.2E-22 score: 81.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..474
None	No IPR available	PANTHER	PTHR23236:SF11	EUKARYOTIC TRANSLATION INITIATION FACTOR 4H	coord: 84..354
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 84..354
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 99..217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig192	contig	P-littoralis_Contig192:192699..203270 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig192.34.2	mRNA_P-littoralis_Contig192.34.2	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig192 191193..204216 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig192.34.2 ID=prot_P-littoralis_Contig192.34.2|Name=mRNA_P-littoralis_Contig192.34.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=506bp
MSKAWADADDETYPEVTEPTPPPAPSSESQTQGGRDSYDNNRGGGGGGFD
NNRGGGGGGYDNRGGGGRRDNGGYGGGGGGGYDDRRGGGGGGGGRDYEQV
PVPDAPPYKALLGNLPYSVYENEIANLFAPCGGLDDIYLVKDRDTGDPKG
YGYVTFKDKAGLLQALEMTGLALHNRNLRVEVAKPQTRRGYGDGGFGSGG
FTGGRQGGGGFRQQGGGGRNDYQGGGRGQDRGYERRGYGYGRGGGGGRDG
QSSGEGQPGFDSFTSRRREDRGGQGGGSQDGPIGAGGPDVPAGSEAPPSS
GRRKLNLVPRTKPAGQAAAAAPAPASTKKASIFGGGKAHDEFAYEKAKAS
RPAASGGRGGGAASTGDPPSGGRGGRGAGAGRGPSGRGAGPGRGSPAGRG
RGGGKGGDKSGGAPPATPPPAAGSATKGGADTAPPVPITPSPASTTASTA
ASTGVEEGWKSAKPAGGKASGGKVAAATAATAEVSAGEPDKVDNKFAALN
VDDDE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf