prot_P-littoralis_Contig189.78.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig189.78.1
Unique Nameprot_P-littoralis_Contig189.78.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length385
Homology
BLAST of mRNA_P-littoralis_Contig189.78.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 1.960e-118
Identity = 194/272 (71.32%), Postives = 216/272 (79.41%), Query Frame = 0
Query:  125 AADAGRRWINEMKAGDKVIGYVAGTTKFAAFVDCSVVRRAAKDKVVPVTGFLHLADINSPYALEGTPRAKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNMNKEKVVKLRDSKRQRSRKSRRQRIHKKGQKPAVGDIVEGYVRKVEDSMLLVDVMFAQLSVLRANKIRNSGEGGKFVNLSEKAKPGDVITVSIEAIQTSQRRGVEDDKATINFVGWGEAGTAGESN-------------ATEGGGGGLDDAPGQASFDIAAEIDALPVR 383
            AA AGRRWI E+K GDKVIGYVA TT FAAFVDCSVVR+ +K+K+VPVTGFLHL DI  PYALEGTP  KDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPN+NK+KV+KLRDSKRQRSR SRR+R+HKKG++ AVGDIVEGYVR+V +SMLLVDVMFAQLSVLRA+ IRNS EG KFVNLS K KPGD+ITV IE I+TS+RRG +DDKATI+FV WG  G A + N             AT           GQ   DIAAEIDALP +
Sbjct:  113 AAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRGAKDDKATIDFVAWGGLGAAKDENHQXXXXXXXXXXXAT---------GVGQ-ELDIAAEIDALPAQ 374          
BLAST of mRNA_P-littoralis_Contig189.78.1 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.930e-16
Identity = 74/243 (30.45%), Postives = 106/243 (43.62%), Query Frame = 0
Query:  133 INEMKAGDKVIGYVAGTTKFAAFVDCSVVR-----------------------RAAKDKVVPVTGFLHLADINSPYALEGTPRAKDCE-----------VEVKKGIHLTAYVKDVFPNAGRMTLSLDPNMNK---------------------EKVVKLRDSKRQRSRKSRRQRIHKKGQKPAV---GDIVEGYVRKVEDSMLLVDVMFAQLSVLRANKIRNSGEGGKFV-NLSEKAKPGDVI 316
            ++E+K G ++IG V   + +AAF+DC V R                       R A  K+ P  GFLH +DIN                            +KKG H++ YVKDVFPN+GR T++LDP + +                     EKV  +R  KR+ +  +RR R       P+    GD V G + KV +  LLVDV    L  +    IR +  GG+F+ NL + A+PG  +
Sbjct:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQA-RGGEFIENLRDLAQPGQSV 335          
BLAST of mRNA_P-littoralis_Contig189.78.1 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.140e-13
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 0
Query:  133 INEMKAGDKVIGYVAGTTKFAAFVDCSVVRRAAKDKVVPVTGFLHLADI-----------NSPYALEGTPRAKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNMNKEKVVKLRDSKR 241
            +  ++ G ++ G V G T+FAAF+D  VVR     K+V     LH  D+           N P  LE  P        +++GIH++ YVKDVFPN+GR +++LDP+++K KV+  R  KR
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218          
BLAST of mRNA_P-littoralis_Contig189.78.1 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 83.2 bits (204), Expect = 1.230e-13
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 0
Query:  133 INEMKAGDKVIGYVAGTTKFAAFVDCSVVRRAAKDKVVPVTGFLHLADI-----------NSPYALEGTPRAKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNMNKEKVVKLRDSKR----QRSRKSRRQRIHKKGQKPAVGDIVEGYVRKVEDSM 276
            +  ++ G ++ G V G T+FAAF+D  VVR     K+V     LH  D+           N P  LE  P        +++GIH++ YVKDVFPN+GR +++LDP+++K KV+  R  KR    +R++  + + + +  +K A   +V+G V K +D++
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQA--RVVKGKVLKDDDTI 255          
BLAST of mRNA_P-littoralis_Contig189.78.1 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.280e-12
Identity = 52/174 (29.89%), Postives = 87/174 (50.00%), Query Frame = 0
Query:  129 GRRWINEMKAGDKVIGYVAGTTKFAAFVDCSVVRRAAKDKVVPVTGFLHLADINSPYALEGTPRAKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNMNKEKVVKLRDSKRQRSRKSRRQRIHKKGQKPAV--------GDIVEGYVRKVEDSMLLVDVMFAQLSVLRANKI 294
            G  W+  +K G    G V   T F  F++C +VR   K  V  V G LH  D+     +    R K  +V ++KG+ +  YVK VFP +GR +L++DP + + K+ + R  ++Q   K R      K  +P V        GD+VEG  + V++  +  D+   + ++L+A+ +
Sbjct:  137 GMVWLKTLKTGMPFYGGVKSVTNFGVFLECGIVRPGRKGTVTRVQGMLHKTDLAPSMKVPFQYRPKATKV-LEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAKLREQRQRRKQ-GLKVRYSASEMKAWEPEVEEVKEANPGDVVEGTCKCVKNFGMYFDIGAEKSALLKASDL 308          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.78.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJQ8_ECTSI1.960e-11871.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYC3_9STRA8.930e-1630.45S1 motif domain-containing protein n=1 Tax=Tribone... [more]
W7TQN5_9STRA1.140e-1337.50Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC1.230e-1333.33UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S2UWN5_9STRA8.280e-1229.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 260..341
e-value: 0.19
score: 20.8
coord: 137..225
e-value: 7.4E-5
score: 32.1
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 257..334
e-value: 1.5E-6
score: 30.1
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 120..227
e-value: 9.9E-7
score: 30.5
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 133..236
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 258..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..366
IPR003029S1 domainPROSITEPS50126S1coord: 139..225
score: 9.446796
IPR003029S1 domainPROSITEPS50126S1coord: 262..335
score: 9.536791

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:378805..382245 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.78.1mRNA_P-littoralis_Contig189.78.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig189 377897..382488 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig189.78.1 ID=prot_P-littoralis_Contig189.78.1|Name=mRNA_P-littoralis_Contig189.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=385bp
MPRRSRWAATGATAAATATSAAVTLLLLCGATPCQAFLAAAGHGVLVPQQ
QPCRNNRCSSSRRTAAMSAADDLSPQQPAVVVAEVDDPPPGASASSSSSS
SSSSSAEGSTDAEKKTAKPDAKDAAADAGRRWINEMKAGDKVIGYVAGTT
KFAAFVDCSVVRRAAKDKVVPVTGFLHLADINSPYALEGTPRAKDCEVEV
KKGIHLTAYVKDVFPNAGRMTLSLDPNMNKEKVVKLRDSKRQRSRKSRRQ
RIHKKGQKPAVGDIVEGYVRKVEDSMLLVDVMFAQLSVLRANKIRNSGEG
GKFVNLSEKAKPGDVITVSIEAIQTSQRRGVEDDKATINFVGWGEAGTAG
ESNATEGGGGGLDDAPGQASFDIAAEIDALPVRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR012340NA-bd_OB-fold
IPR003029S1_domain