prot_P-littoralis_Contig18.215.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig18.215.2
Unique Nameprot_P-littoralis_Contig18.215.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length414
Homology
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: D8LS07_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS07_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 8.750e-68
Identity = 183/349 (52.44%), Postives = 219/349 (62.75%), Query Frame = 0
Query:    2 AFWCRRVSGLLVWGFIVFIFAQLWQVAWKLRDMKLVGVCMVVTASLLYIFYKRYQHIRESGLSGVELVRSLAVDNSGAARAKGVTREARALCVDFTYDPHLAFRERASRYGFELYP---PPXXXXXXXXXXXXXXXGPNGAXXXXXXXXXXXXXXXXXXXXXXXXGEGIEEGGSDKGSPSRSRARRRVRWPWERKSGHEDDTSPDQGNSGSTGSAQPDEETPIAQGEIHDQQHQRPRSSLSTASAASGQPQPQLST----PPYFE---PNGXXXXXXXXXXRGWRRVIQASELSPSCSVCLFDYYKDEAVTLLPCSHLYHTECINIWMRSHVDCPFCRADINGW-NSGG 339
            A WCRR++GLLVWGF+ FIF+QLW+VAW+L+D+KL+GVC++VT SLLY+  KRYQ+IRE+GLSGVELVR+LAVD+ G  R +GV+R+ARA+C+DF YDP   FRER++  GFE+YP   P      XXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXX                                  +DT                EET I +             S +  S  SG     +S+    P   E   P  XXXXX     R  R+VI+ASEL+ SCSVCLF Y+ DEAVTLLPC HLYHTECI+IWMR HVDCP+CRAD+N W NSGG
Sbjct:   42 ALWCRRIAGLLVWGFVAFIFSQLWEVAWELKDLKLMGVCLLVTVSLLYVLVKRYQNIRETGLSGVELVRALAVDDPGGVRLRGVSRKARAMCIDFKYDPEGVFRERSAGRGFEMYPTQRPGGGASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANDT----------------EETLITRRXXXXXXXXXXXXSAAKPSGVSGSANEGVSSNSNNPDAAELGQPXXXXXXXPAYLERDGRQVIRASELNASCSVCLFGYFVDEAVTLLPCGHLYHTECIDIWMRDHVDCPYCRADMNVWCNSGG 374          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: A0A5J4N7N6_9TREM (E3 ubiquitin-protein ligase RNF115/126 (Fragment) n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N7N6_9TREM)

HSP 1 Score: 72.8 bits (177), Expect = 5.520e-12
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 0
Query:  287 SCSVCLFDYYKDEAVTLLPCSHLYHTECINIWMRSHVDCPFCRADING 334
            +CS+C  DY   E  T LPC H+YHT C+N W++ H  CP CR D+NG
Sbjct:   56 TCSICFEDYQTSEKATRLPCQHIYHTTCVNTWLKQHATCPVCRKDLNG 103          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: A0A251TIY6_HELAN (RING-type E3 ubiquitin transferase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TIY6_HELAN)

HSP 1 Score: 68.2 bits (165), Expect = 1.070e-10
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0
Query:  287 SCSVCLFDYYKDEAVTLLP-CSHLYHTECINIWMRSHVDCPFCRADI 332
            SCSVCL D+ +DE + LLP C+H +H  CI+ W+RSH +CP CRA I
Sbjct:   32 SCSVCLSDFQEDETLRLLPKCNHAFHVSCIDTWLRSHTNCPLCRAGI 78          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.720e-10
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 0
Query:  278 VIQASELSPSCSVCLFDYYKDEAVTLLPCSHLYHTECINIWMRSHVDCPFCRADIN 333
            V++ SEL   C++CL  Y   E V +LPC H++H EC+++W+R H  CP+C+ D+N
Sbjct:  313 VVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLN 368          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: UPI00126378D3 (E3 ubiquitin-protein ligase RING1-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126378D3)

HSP 1 Score: 72.8 bits (177), Expect = 1.870e-10
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 0
Query:  278 VIQASELSPSCSVCLFDYYKDEAVTLLP-CSHLYHTECINIWMRSHVDCPFCRADINGWNSGGXXXXTRPTMESSGGISAAAVDTRI 363
            +++ SE    CSVCL ++ +DE + LLP C+H +H  CI+ W+RSH +CP CRA I  +N+ G    +  T +S    SA + DT++
Sbjct:  150 LVEGSE----CSVCLNEFEEDETLRLLPKCNHAFHVPCIDTWLRSHTNCPMCRAPIVKYNTSGESSSSSTTPDSITDNSAVSSDTQV 232          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: A0A2I4GV41_JUGRE (RING-type E3 ubiquitin transferase n=2 Tax=Juglans TaxID=16718 RepID=A0A2I4GV41_JUGRE)

HSP 1 Score: 72.4 bits (176), Expect = 3.170e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 0
Query:  288 CSVCLFDYYKDEAVTLLP-CSHLYHTECINIWMRSHVDCPFCRADINGWNSGGXXXXTRPTMESSG 352
            CSVCL D+ +DE++ LLP CSH +H  CI+ W+RSH +CP CRA I    +G     T P M  SG
Sbjct:  152 CSVCLSDFEEDESLRLLPKCSHAFHLPCIDTWLRSHKNCPLCRAPIVSNAAGSLVTATEPNMNVSG 217          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.050e-9
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0
Query:  278 VIQASELSPSCSVCLFDYYKDEAVTLLPCSHLYHTECINIWMRSHVDCPFCRADIN 333
            V++ SEL   C++CL  Y   E V +LPC H++H EC+++W+  H  CP+C+ D+N
Sbjct:  407 VVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLN 462          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: B8BTL4_THAPS (RING-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTL4_THAPS)

HSP 1 Score: 70.1 bits (170), Expect = 2.220e-9
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 0
Query:  278 VIQASELSPSCSVCLFDYYKDEAVTLLPCSHLYHTECINIWMRSHVDCPFCRADI 332
            ++ + +  PSCS+CL +Y K +AVT LPC H+YH  C++ W  +HV CP C  D+
Sbjct:  347 LLLSDDEEPSCSICLCEYEKGDAVTRLPCHHIYHKSCLDSWTTNHVRCPLCNYDL 401          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: UPI001BF20DF5 (RING-H2 finger protein ATL52-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF20DF5)

HSP 1 Score: 69.3 bits (168), Expect = 3.220e-9
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 0
Query:  288 CSVCLFDYYKDEAVTLLP-CSHLYHTECINIWMRSHVDCPFCRADINGWNSGGXXXXTRPTMESSGGIS 355
            CSVCL ++ +DE++ LLP CSH +H  CI+ W+RSH +CP CRA +    +G     T P +  S G S
Sbjct:  143 CSVCLSEFEEDESLRLLPKCSHAFHLPCIDTWLRSHKNCPLCRAPVVSDVAGSQVLATEPNVSVSAGSS 211          
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Match: A0A540K4H5_MALBA (RING-type E3 ubiquitin transferase n=5 Tax=Maleae TaxID=721813 RepID=A0A540K4H5_MALBA)

HSP 1 Score: 69.3 bits (168), Expect = 3.270e-9
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  282 SELSPSCSVCLFDYYKDEAVTLLP-CSHLYHTECINIWMRSHVDCPFCRADI 332
            S LS  C+VCL D+  D+ V  LP CSH++H +CI++W+RSH +CP CRA I
Sbjct:  133 SLLSRDCAVCLIDFQNDDYVRTLPVCSHVFHVDCIDMWLRSHANCPLCRAGI 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.215.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS07_ECTSI8.750e-6852.44RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A5J4N7N6_9TREM5.520e-1252.08E3 ubiquitin-protein ligase RNF115/126 (Fragment) ... [more]
A0A251TIY6_HELAN1.070e-1057.45RING-type E3 ubiquitin transferase n=1 Tax=Heliant... [more]
D8LAX1_ECTSI1.720e-1044.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI00126378D31.870e-1040.23E3 ubiquitin-protein ligase RING1-like n=1 Tax=Pis... [more]
A0A2I4GV41_JUGRE3.170e-1050.00RING-type E3 ubiquitin transferase n=2 Tax=Juglans... [more]
A0A6H5JT04_9PHAE2.050e-942.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
B8BTL4_THAPS2.220e-945.45RING-type domain-containing protein n=1 Tax=Thalas... [more]
UPI001BF20DF53.220e-944.93RING-H2 finger protein ATL52-like n=1 Tax=Carya il... [more]
A0A540K4H5_MALBA3.270e-953.85RING-type E3 ubiquitin transferase n=5 Tax=Maleae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 288..328
e-value: 1.6E-6
score: 37.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 287..329
e-value: 1.6E-11
score: 44.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 288..329
score: 12.415513
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 277..336
e-value: 6.4E-16
score: 59.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 383..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..217
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 287..377
NoneNo IPR availablePANTHERPTHR14155:SF283E3 UBIQUITIN-PROTEIN LIGASE ATL6-LIKEcoord: 287..377
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 288..329
e-value: 6.81626E-16
score: 69.2611
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 284..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:928086..939478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.215.2mRNA_P-littoralis_Contig18.215.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig18 915312..942489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig18.215.2 ID=prot_P-littoralis_Contig18.215.2|Name=mRNA_P-littoralis_Contig18.215.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=414bp
MAFWCRRVSGLLVWGFIVFIFAQLWQVAWKLRDMKLVGVCMVVTASLLYI
FYKRYQHIRESGLSGVELVRSLAVDNSGAARAKGVTREARALCVDFTYDP
HLAFRERASRYGFELYPPPPPPPPTSSVSTAAAAGPNGAIGTVGISTVGT
VGTVGATGAVGTAGEGIEEGGSDKGSPSRSRARRRVRWPWERKSGHEDDT
SPDQGNSGSTGSAQPDEETPIAQGEIHDQQHQRPRSSLSTASAASGQPQP
QLSTPPYFEPNGGAAAGGGGGGRGWRRVIQASELSPSCSVCLFDYYKDEA
VTLLPCSHLYHTECINIWMRSHVDCPFCRADINGWNSGGGGGGTRPTMES
SGGISAAAVDTRIWTRARAATVPREATAAAAATPAAQGQQGNGSDVSGGA
IESGNGVAGGGRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD