prot_P-littoralis_Contig179.29.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig179.29.1
Unique Nameprot_P-littoralis_Contig179.29.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length572
Homology
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 6.210e-131
Identity = 230/259 (88.80%), Postives = 242/259 (93.44%), Query Frame = 0
Query:  313 ADDSEAGDSKKAKSVENSKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSPRAKQGIQSFQGTKKSFD 571
            ADD+E GD+KKAKS ENSKI+LRGLPWDT DDDVKDFFKACGKI +VEQPKNPDGRSSGTAYV FD++A+A KA+E+DGQELGGRWLKIMMSFEKPDHAR GEPK KP GCTTVFIGNLSWSIDEDT+RQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLAN+DVMGRPIRVDYAAPRAPRDDSFGGGG       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF+ RAKQGIQSFQGTKKSFD
Sbjct:  266 ADDAEEGDAKKAKS-ENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 517          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 251 bits (640), Expect = 4.080e-73
Identity = 116/184 (63.04%), Postives = 146/184 (79.35%), Query Frame = 0
Query:  331 KIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGGGG 514
            K+F++GLPW+T +  +KDFFK  G I S++QP N DGR+SGTAYVVFD++ SA KA+E+DG  +G RW+K++++ + P   + GE   KPEGC TVFIGNLSW IDEDTVRQTFG+CGDIKSVRFAEDRETG FRGFG+V+FYDG+  D AMKL  +D+MGR +R+DY+APR      FGGGGG
Sbjct:  312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPGE---KPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG-----FGGGGG 487          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.610e-68
Identity = 116/207 (56.04%), Postives = 148/207 (71.50%), Query Frame = 0
Query:  316 SEAGDSKKAKSVEN-------SKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEP--KPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGGG 513
            ++   +KKA   E        +KI++RGLPW   +++V+DFFK CG+I S + P + +GR+SGTA+VVF  S +A K+ E        RWLKI+++ E+      G P  K KPEGCTTVFIGNLSW +DED VR  FGECG+I SVRFA DRETG+F+GFGHVEF DGE VDAA+ +A T++ GRP+RVDYAAPRAPR+ SFGGGG
Sbjct:   79 ADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.660e-63
Identity = 100/173 (57.80%), Postives = 129/173 (74.57%), Query Frame = 0
Query:  330 SKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPR 502
            SKIF+RGLPW   +D++++ F  CG+I  VEQP N DGRSSGTA +VF +++SA  AVEM+G + GGRWL I ++ +KP       P  KPEGC T+FIGNLSW IDED+VR+ F ECG+I +VRFAED+ETG+FRGFGHVEF + +    A+ +A TD+MGR +RVDYA  R
Sbjct:  204 SKIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTERA-PSEKPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 218 bits (554), Expect = 3.350e-60
Identity = 106/183 (57.92%), Postives = 129/183 (70.49%), Query Frame = 0
Query:  331 KIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGGG 513
            +IF++GLPW   DD+VK+FFK CG I   + PK+ +GR+SGTAYV F T     KA E+DG   G RWLKI  + E+P  A+ GE   +PEGC TVF GNLSW IDE+++R+ F +CGDI SVRFAEDRETG+FRGFG+V FYDG   D AMKL    V GR IR+DY+APR    D  GGGG
Sbjct:  332 RIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPGE---RPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR----DRSGGGG 507          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.740e-59
Identity = 96/187 (51.34%), Postives = 132/187 (70.59%), Query Frame = 0
Query:  321 SKKAKSVENS-----KIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPR 502
            SKKA +V +      K+++RGLPW   DD+++++F +CG+I S E P   DGRSSGTA + F T  +  K + ++G++ GGRWL I  + +KP  A   E   KP  C TVF GNLSW++DEDT+R+TF ECG+I S+RFA DRETGEF+GFGH+EF+  +  DAA+ +A TD+MGR +RVDYAA +
Sbjct:  192 SKKAAAVADDDGAGKKMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDKPAFA-ARETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 212 bits (540), Expect = 2.610e-58
Identity = 95/175 (54.29%), Postives = 126/175 (72.00%), Query Frame = 0
Query:  325 KSVENSKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYA 499
            ++ E +K+++RGLPW   + +V++FF ACG I S E P   DGRSSGTA + F+T+  A  A+E++G +  GRWL I  S  KP  +   EP  K +GC TVF+GNL+W +DEDT+RQ FGECG+I SVRFA DRETGEF+GFGH+EF D E  D A+ +A TD++GR +RVDYA
Sbjct:  270 EATEGNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPKPILS-AREPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: W7TQX9_9STRA (RNA binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 7.700e-56
Identity = 102/198 (51.52%), Postives = 131/198 (66.16%), Query Frame = 0
Query:  324 AKSVENSKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELG--GRWLKIMMSFEKPDHARGGE-------PKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGG 512
            A   E+ K+F++GLPW   +++V+ FF+ CG + SVE P   DGRSSGTAY+VF       KAV M+ +  G  GRW+++           GG+       P  KPEGC +VFIGNLSW+IDE+T+R  F  CG++ SVRFA DRETGEFRGFGHV+F D    +AA+++A T VMGR IRVDYA PR PR+  FGGG
Sbjct:  269 ASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLK-DGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGG 465          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A485LH77_9STRA (Aste57867_21298 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH77_9STRA)

HSP 1 Score: 202 bits (513), Expect = 5.780e-55
Identity = 96/191 (50.26%), Postives = 133/191 (69.63%), Query Frame = 0
Query:  324 AKSVENSKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGGGG 514
            A + EN +IF+ GLPW   +D++K  F  CG+I S+  P++ +GRS+GT ++ F T+A+A  A+ +DG + GGRW+KI  S EK +H      + KPEGC ++FIGNLSW+IDEDT+R TF  CG I+SVR A DRETG+FRGFGH++F   E VD A+K+  TDV+GR IRV+++  +      F GGGG
Sbjct:  185 AATSENCEIFIAGLPWVCDEDELKAVFADCGEITSLRLPQDANGRSTGTGFMTFSTAAAAEAAIALDGSDFGGRWMKIR-SAEKKNHV-----EDKPEGCQSIFIGNLSWNIDEDTLRSTFEHCGAIESVRLATDRETGDFRGFGHIDFESSEAVDEAVKMNGTDVLGRAIRVNFSEKK-----QFNGGGG 364          
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Match: A0A8K1CLK3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLK3_PYTOL)

HSP 1 Score: 201 bits (512), Expect = 2.690e-54
Identity = 104/193 (53.89%), Postives = 133/193 (68.91%), Query Frame = 0
Query:  323 KAKSVENSKIFLRGLPWDTPDDDVKDFFKACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLKIMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAAPRAPRDDSFGGGGGR 515
            +AKS E   IF+ GLPW   +D+V++ F  CG++ SV  P+  +GR+SG A+VVF T+ +AT A+ +DGQ+ GGRW+KI  + +K         + KPEGCT+VFIGNLSW +DEDT+RQ FGECG+I S R A DRETGEFRGFGH++F   E VD A+KLA T V GR IRV YA  R    +   GGGGR
Sbjct:  254 EAKSTE---IFIAGLPWAATEDEVRERFAECGEVVSVRLPQI-NGRASGNAFVVFKTAEAATAALGLDGQDFGGRWMKIRTAEKKNMF------EEKPEGCTSVFIGNLSWDVDEDTIRQAFGECGEITSCRLATDRETGEFRGFGHLDFASTEAVDEAIKLAGTYVGGRAIRVTYAKSR----EQHNGGGGR 432          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.29.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF99_ECTSI6.210e-13188.80Protein for assembly of pre-ribosomal particles co... [more]
A0A7S2V571_9STRA4.080e-7363.04Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZAT4_9STRA1.610e-6856.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RIH6_9STRA5.660e-6357.80Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3UY59_HETAK3.350e-6057.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Q248_9STRA1.740e-5951.34Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KL43_FISSO2.610e-5854.29Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
W7TQX9_9STRA7.700e-5651.52RNA binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A485LH77_9STRA5.780e-5550.26Aste57867_21298 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CLK3_PYTOL2.690e-5453.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 331..402
e-value: 1.0E-20
score: 84.9
coord: 425..497
e-value: 5.7E-25
score: 99.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 332..398
e-value: 1.4E-16
score: 60.0
coord: 426..495
e-value: 1.3E-15
score: 57.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 424..501
score: 17.506401
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 330..406
score: 16.176081
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 410..546
e-value: 1.1E-28
score: 101.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 258..409
e-value: 8.2E-30
score: 105.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 557..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 497..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..102
NoneNo IPR availablePANTHERPTHR48024GEO13361P1-RELATEDcoord: 233..571
NoneNo IPR availablePANTHERPTHR48024:SF11NUCLEAR LOCALIZATION SEQUENCE-BINDING PROTEINcoord: 233..571
NoneNo IPR availableCDDcd00590RRM_SFcoord: 332..401
e-value: 1.40326E-20
score: 83.8937
IPR034362PHIP1, RNA recognition motif 2CDDcd12272RRM2_PHIP1coord: 425..497
e-value: 6.50021E-32
score: 115.952
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 417..533
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 325..414

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:123508..128821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.29.1mRNA_P-littoralis_Contig179.29.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig179 123508..128821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig179.29.1 ID=prot_P-littoralis_Contig179.29.1|Name=mRNA_P-littoralis_Contig179.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=572bp
QRDSPTPITHWLLLTTSRYSTITTPVQHHCTYLSTFTPIKIMGKDKVSKK
SEGSSKKAKKSAAAVVVVAKAVPVVVKKGKASKADKKKKGIKEEVKVDKK
ANKKADKKAKKAKKVAPPPPPSSSSEEESSDEESEEEVKPKVVAKAVTKD
ESSDEDSSSEEESSEEEKPKAKAAPVKATPAKKAESSDDDDSSDDDSDDS
DDSDDSDDSDDKEAALKAAAAAAAKKAKESSSEESSDDDSSDEEEEKPKA
KAKAAAKKTESSDDDSSSEEESDEEEKPKPKAAAAAAKAEESSSEEESSD
DEEEEKPSKKRKADDSEAGDSKKAKSVENSKIFLRGLPWDTPDDDVKDFF
KACGKIASVEQPKNPDGRSSGTAYVVFDTSASATKAVEMDGQELGGRWLK
IMMSFEKPDHARGGEPKPKPEGCTTVFIGNLSWSIDEDTVRQTFGECGDI
KSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANTDVMGRPIRVDYAA
PRAPRDDSFGGGGGRGGGRGGGRGGGGGGRGGGGGGRGGGRGGGRGGGGG
GFSPRAKQGIQSFQGTKKSFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034362PHIP1_RRM2
IPR035979RBD_domain_sf