prot_P-littoralis_Contig17.99.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig17.99.1
Unique Nameprot_P-littoralis_Contig17.99.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length443
Homology
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A6H5L9L8_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.020e-40
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0
Query:   47 MADDVGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARRPKSRMQ 131
            M ++ GHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQ ++MAD+CVR MDG+K+ENLAITVEIARRPK+R Q
Sbjct:    1 MGEEPGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQNRAMADDCVRGMDGLKMENLAITVEIARRPKARAQ 85          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A2G8LR44_STIJA (Putative RNA-binding protein Rsf1 isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LR44_STIJA)

HSP 1 Score: 74.3 bits (181), Expect = 3.200e-12
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   52 GHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARR-PKSRMQGRG 134
            G +++G L+   +  D+E    KYG I +LW+A+NPPGFAF +F ++  ADEC+R++DG       I VE++R  P  R +GRG
Sbjct:   19 GRLYVGGLNHSATKDDVERAFSKYGKIIDLWLARNPPGFAFVEFSSQHDADECLRALDGSDFMGNQIKVELSRAMPGGRGRGRG 102          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A7R9NJ67_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9NJ67_9CRUS)

HSP 1 Score: 71.2 bits (173), Expect = 2.210e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   47 MADDVGH-----IHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARRPKSR 129
            M++  GH     +++GNL    S  +LE +  KYG + ++WVA+NPPGFAF +F+    A++ +R +DG  +    I VEIA  P+ R
Sbjct:   26 MSNSYGHSSDCKVYVGNLGDTTSKHELESEFGKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAIRGLDGNSVSGSRIRVEIATGPRQR 113          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A7M7J3F1_VARDE (RRM domain-containing protein n=2 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7J3F1_VARDE)

HSP 1 Score: 72.8 bits (177), Expect = 2.770e-11
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0
Query:   41 AAYQSIMADDVGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIAR-RPKSRMQG 132
            A++QS   D+   I +G +   ++  DLE    KYG +TN+WVA+NPPGFAF DF     A + V+ MDG +L    + V   R R  +R +G
Sbjct:   29 ASFQSRQQDNQNRIFVGGIGDNINKEDLENVFSKYGRLTNVWVAQNPPGFAFVDFGDSQNASDAVQQMDGQELNGSTLKVAPYRGRSNNRSRG 121          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: UPI0010BD84E8 (serine/arginine-rich splicing factor 1 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BD84E8)

HSP 1 Score: 71.2 bits (173), Expect = 4.730e-11
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0
Query:   43 YQSIMADDVGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARRPKSRMQGRG 134
            YQS    +   I +G ++  +   DLE    KYG +TN+WVA+NPPGFAF DF     A + V  MDG +L  + + V   R  ++  +GRG
Sbjct:   28 YQSRDQQNQNRIFVGGINESIQKEDLESVFSKYGRLTNVWVAQNPPGFAFVDFDDNQNASDAVAQMDGQELNGMTLKVAPYRGRRNN-RGRG 118          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A0J7L724_LASNI (Rna-binding protein 1 n=3 Tax=Lasiini TaxID=72772 RepID=A0A0J7L724_LASNI)

HSP 1 Score: 68.6 bits (166), Expect = 1.010e-10
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   54 IHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIA 123
            +++GNL    S  +LE K  KYG + N+WVA+NPPGFAF +F+    A++ VR +DG+ L    + VE++
Sbjct:   13 VYVGNLGSSASKHELEGKFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGVHLCGTRVRVEMS 82          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A7S0J294_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J294_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-10
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 0
Query:   46 IMADDVGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARRPKSRMQG 132
            +  D V  +++GNL P+ S  ++  +  +YG ++++WVA+NPPGFAF  F+    A +C+ +++G  L    + +E+AR    RM G
Sbjct:   11 LRRDMVQRVYLGNLDPKCSKEEVTDECSRYGRLSDVWVARNPPGFAFVTFEDYRDAKDCMDALNGQMLGAQRVKIEMARNQGGRMAG 97          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A1V9XHC5_9ACAR (RRM domain-containing protein n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XHC5_9ACAR)

HSP 1 Score: 70.9 bits (172), Expect = 1.610e-10
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 0
Query:   43 YQSIMADDVGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARRPKSRMQGRG 134
            YQ    D+   I +G +   V+  DLE    KYG +TN+WVA+NPPGFAF DF     A + V+ MDG +L    + V   R  ++  +GRG
Sbjct:   47 YQGRQQDNHNRIFVGGIGDNVNKEDLESVFSKYGRLTNVWVAQNPPGFAFVDFGESQHATDAVQQMDGQELNGSTLKVAPYRGRRNN-RGRG 137          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A131ZXJ1_SARSC (RNA-binding protein-like protein 3 n=2 Tax=Psoroptidia TaxID=223472 RepID=A0A131ZXJ1_SARSC)

HSP 1 Score: 68.2 bits (165), Expect = 1.690e-10
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 0
Query:   54 IHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIARRPKSRMQGR--GXXXXXGARFG 144
            +++GNL      +D+E    K+G + N+WVA+NPPGFAF +F+    A++ VR++DG ++    + VE++   +SR  GR  G     G RFG
Sbjct:   14 VYVGNLQDNCLKSDVENAFSKFGPLKNVWVARNPPGFAFVEFEDSRDAEDSVRALDGTRIGGNRVRVEMSH-GRSRRGGRRFGYGGDRGERFG 105          
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Match: A0A182KCI8_9DIPT (RRM domain-containing protein n=5 Tax=Cellia TaxID=44534 RepID=A0A182KCI8_9DIPT)

HSP 1 Score: 67.8 bits (164), Expect = 1.830e-10
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   54 IHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSMADECVRSMDGMKLENLAITVEIA 123
            +++GNL    S  ++E    KYG + N+WVA+NPPGFAF +F+ K  A++ VRS+DG +     I VE++
Sbjct:   13 VYVGNLGSSASKHEIESAFGKYGPLRNVWVARNPPGFAFVEFEDKRDAEDAVRSLDGTRCCGTRIRVEMS 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.99.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9L8_9PHAE6.020e-4084.71RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2G8LR44_STIJA3.200e-1242.86Putative RNA-binding protein Rsf1 isoform X2 n=1 T... [more]
A0A7R9NJ67_9CRUS2.210e-1138.64Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A7M7J3F1_VARDE2.770e-1139.78RRM domain-containing protein n=2 Tax=Varroa destr... [more]
UPI0010BD84E84.730e-1139.13serine/arginine-rich splicing factor 1 n=1 Tax=Gal... [more]
A0A0J7L724_LASNI1.010e-1042.86Rna-binding protein 1 n=3 Tax=Lasiini TaxID=72772 ... [more]
A0A7S0J294_9EUKA1.060e-1034.48Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A1V9XHC5_9ACAR1.610e-1040.22RRM domain-containing protein n=1 Tax=Tropilaelaps... [more]
A0A131ZXJ1_SARSC1.690e-1037.63RNA-binding protein-like protein 3 n=2 Tax=Psoropt... [more]
A0A182KCI8_9DIPT1.830e-1042.86RRM domain-containing protein n=5 Tax=Cellia TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 53..121
e-value: 2.8E-12
score: 56.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 55..118
e-value: 7.6E-11
score: 41.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 52..125
score: 12.492113
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..143
e-value: 9.1E-16
score: 60.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..442
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..442
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..145
NoneNo IPR availablePANTHERPTHR15481:SF0LD23870P-RELATEDcoord: 5..274
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 5..274
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 53..125
e-value: 3.07848E-29
score: 107.321
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 39..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:463358..479762 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.99.1mRNA_P-littoralis_Contig17.99.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig17 463358..479762 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig17.99.1 ID=prot_P-littoralis_Contig17.99.1|Name=mRNA_P-littoralis_Contig17.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=443bp
DRSKTSEHERQRSHPSSEGHTTSKEGKPHQPNGNCNPRQPAAYQSIMADD
VGHIHIGNLHPRVSVADLEPKLIKYGTITNLWVAKNPPGFAFCDFQTKSM
ADECVRSMDGMKLENLAITVEIARRPKSRMQGRGRGGGGGARFGGGGGGG
GFGGGGGGGSYGGGGGYGDRARDAGRDRDYRRRSRSRDSRSRSPRRDRDR
GGRDYVRDSRDYGRSSRRGDSRDRAPARRSRSRSRSKDRRRSRSRSDSRS
PRGSRKSGRDSRSRSKNKSRSRSRSGSGSGGRVERRSRDGDDKENGASNG
GKDGSKKKRSQDGEDDEGSKSRSPKRSNGAAGVEAGDKMEVGEDDGGNTA
GGDESGTAVVAAVAATATEEQNGNGNAAASSEKDDDGEGEGDDGGAGVEE
GEGEDDEEHGNGVGDDDDDDDDDDEAEEAENGDAGDESDEYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf