prot_P-littoralis_Contig166.26.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig166.26.1
Unique Nameprot_P-littoralis_Contig166.26.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length163
Homology
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BLAST of mRNA_P-littoralis_Contig166.26.1 vs. uniprot
Match: A0A6H5K490_9PHAE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K490_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.790e-42
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 0 
Query:    3 NGMAGAGSRGXXXXXXXGDAMKEPDMAPFLSACFTELRAKGMHEPRVFTHPTSLTEIRQLWRDVCDDGVHKLKEQESPHLIAGIVVWHLKRQPEPLVPYSLYSLVVA 109
            +GMAGAG +        G   KEP M PFL+ACFTELRAKGMHEPR+F HPTSLTEIRQLWRDV   G+ KLKEQESPHLIAG+VVW LKRQPEPLVPYSLY+LVVA
Sbjct:    6 SGMAGAGEK------IGGGDSKEPAMVPFLTACFTELRAKGMHEPRIFQHPTSLTEIRQLWRDVY--GLRKLKEQESPHLIAGLVVWRLKRQPEPLVPYSLYALVVA 104
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BLAST of mRNA_P-littoralis_Contig166.26.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.520e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0 
Query:   44 MHEPRVFTHPTSLTEIRQLWRDVCDD 69
            MHEPRVF HPTSLTEIRQLWRDVC++
Sbjct:    1 MHEPRVFQHPTSLTEIRQLWRDVCEE 26
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.26.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K490_9PHAE3.790e-4274.77Rho-GAP domain-containing protein (Fragment) n=1 T... [more]
D8LSI7_ECTSI2.520e-688.46Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008936Rho GTPase activation proteinGENE3D1.10.555.10Rho GTPase activation proteincoord: 20..146
e-value: 2.5E-12
score: 48.6
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 30..110
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 31..112
e-value: 6.5E-7
score: 29.3
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 21..163
score: 9.380923
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:159354..172636 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.26.1mRNA_P-littoralis_Contig166.26.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig166 159354..172963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig166.26.1 ID=prot_P-littoralis_Contig166.26.1|Name=mRNA_P-littoralis_Contig166.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MENGMAGAGSRGGGGGAGGGDAMKEPDMAPFLSACFTELRAKGMHEPRVF
THPTSLTEIRQLWRDVCDDGVHKLKEQESPHLIAGIVVWHLKRQPEPLVP
YSLYSLVVAAGAGAAAAAEAAARRLQQHDEQDDDDEDDGAERVTRHVGEA
GNAAGVMGDAGGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008936Rho_GTPase_activation_prot
IPR000198RhoGAP_dom