prot_P-littoralis_Contig166.1.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig166.1.1
Unique Nameprot_P-littoralis_Contig166.1.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length138
Homology
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BLAST of mRNA_P-littoralis_Contig166.1.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.690e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   86 WGEMVH-AGAGSDRAHGRQEYRVIPRVTRAGAKRSGMTPGAFALMASQDDIERS 138
            W EMVH  G G  R  G++E+   P V R+ AKR G   G FAL+A++D+I RS
Sbjct:    7 WTEMVHEGGTGGRRRQGQREFVATPAVPRSRAKRDGPGLGTFALLATEDEINRS 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWG1_9PHAE2.690e-548.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:18763..19185 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.1.1mRNA_P-littoralis_Contig166.1.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig166 18763..19186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig166.1.1 ID=prot_P-littoralis_Contig166.1.1|Name=mRNA_P-littoralis_Contig166.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
TAAAGAPAEASRAEGLPPAAGTMPPEAAATTAATAEWADFMKDHGGGVRI
ARAAGGDATASAGALPATLPAPPRPAATPPTPIEDWGEMVHAGAGSDRAH
GRQEYRVIPRVTRAGAKRSGMTPGAFALMASQDDIERS
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