prot_P-littoralis_Contig155.95.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig155.95.1
Unique Nameprot_P-littoralis_Contig155.95.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length327
Homology
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 9.880e-161
Identity = 247/330 (74.85%), Postives = 264/330 (80.00%), Query Frame = 0
Query:    1 MGGVFEEEG----AEREGXXXXXXXXXXXXXXXXXXATVLDGVLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPDWRLFVSWMAALCTDLTSMVSKIPGSDPQNPRYVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            M GVFEEEG    AE EG    XXXX          ATVLD VLWKLG DKFHRDFRN +LLGLVQDRFPKSKLAYL VKVML+NS+PTERKV+E VSASISAR LFDKLC+ W+T NLTKNK VPDWR FVSWM+ALCTDLTSMVSKIPGSD QNPRYVVNMAKMVQY+R +LVKCTARDRYGKETARI+EILLQNK+LDQQQVGEMAMIPPSDARERLY+L++DRMVSVQEVPKRAD NP+TTFYLWTIKHDQVAQVVL++LYKAMLNMRLRRKFVY NDK LFIHDA                               ENLMFFNTF
Sbjct:    1 MDGVFEEEGEGGHAEEEGVLGGXXXXIGAG------ATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 188 bits (477), Expect = 7.980e-51
Identity = 104/300 (34.67%), Postives = 176/300 (58.67%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPD----WRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  RD R+ + +    +    + +A + V  ML++SAP ER+ +EP SA +SAR LF+        +   KN   P+    WRL ++++  +C D + MV K+     DP   R      YVV+M K+V++++ +      +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY+L  D+++ +QE+PKRADHNP+ TF+ W++   Q+   V + +  ++  +R RRKF    +KEL         +ND +K   D++ RSLDRLD A++ LD  LM +  F
Sbjct:  382 LVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFN--------MESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRAIIHLDGMLMLYRDF 669          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 184 bits (468), Expect = 5.920e-50
Identity = 101/300 (33.67%), Postives = 174/300 (58.00%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPD----WRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  RD R+ + +    +    + +A + V  ML++S+P ER+ +EP S  +SAR LFD        +   K    P+    WRL ++++  +C D + MV K+     DP   R      YVV+M K+V++++ +      +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY+L  D+++ +QE+PKRADHNP+ TF+ W++   Q+   + + +  ++  +R RRKF    +KEL         +ND +K   D++ RSLDRLD A++ LD  LM +  F
Sbjct:  313 LVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFD--------MESVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRAIIHLDGMLMLYRDF 600          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 184 bits (467), Expect = 9.140e-50
Identity = 99/296 (33.45%), Postives = 176/296 (59.46%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPDWRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  RD R+ + +    +    + +A + V+ ML++S+P ER+ +EP S  +SAR LF+ +    + +    N     WRL ++++  +C D + MV K+     DP   R      YVV+M K+V++++ +  +   +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY+L  D+++ +QE+PKRADHNP+ TF+ W++   Q+   + + +  ++  +R RRKF    +KEL         +ND +K   D++ RSLDRLD A++ LD  LM +  F
Sbjct:  320 LVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLFE-MESVKKALPSEANNP---WRLLLNYIMVMCRDKSGMVMKVSQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRAIIHLDGMLMLYRDF 607          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 182 bits (462), Expect = 8.630e-49
Identity = 99/296 (33.45%), Postives = 171/296 (57.77%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPDWRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  RD R+ + +    +    + +A + V  ML++SAP ER+ +EP+SA +SAR LF          N   ++    WRL ++++  +C D + MV K+     DP   R      YVV+M K+V++++        +D++G  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY+L  +++V +QE+PKRADHNP+ TF+ W++    +   + + +  ++  +R RRKF    +KEL          ND +K   D++ RSLDRLD A++ LD  LM +  F
Sbjct:  364 LVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFG----MESVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEGNDLDK--FDKLSRSLDRLDRAIIHLDGMLMLYRDF 651          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 182 bits (461), Expect = 1.050e-48
Identity = 100/296 (33.78%), Postives = 175/296 (59.12%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPDWRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  RD R+ + +    +    + +A + V+ ML++S+P ER+ +E  SA +SAR LF+ +    + +    N     WRL ++++  +C D + M+ K+     DP   R      YVV+M K+V++++ + V    +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY+L  D++V +QE+PKRADHNP+ TF+ W++   Q+   + + +  ++  +R RRKF    +KEL         + D +K   D++ RSLDRLD A++ LD  LM F  F
Sbjct:  354 LVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFN-MESVKKALPSESNNP---WRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEALDIDK--FDKLSRSLDRLDRAIIHLDGMLMLFRDF 641          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A3M6VEE8_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEE8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.540e-48
Identity = 99/300 (33.00%), Postives = 173/300 (57.67%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPD----WRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  RD R+ + +    +    + +A + V  ML++SAP ER+ +EP S+ +SAR LFD        +   K    P+    WRL ++++  +C D + MV K+     DP   R      YVV+M K+V++++ +      +++YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY+L  D+++ +QE+ KRADHNP+ TF+ W++   Q+   + + +  ++  +R RRKF    +KEL         +ND +K   D++ RSLDRLD  ++ LD  LM +  F
Sbjct:  366 LVWRFGVTQLLRDLRHKACVRFATENI--NAVAGVIVAAMLQHSAPHEREKDEPTSSPVSARDLFD--------MESVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYVQEKYGVASARIVRLLMEQRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEISKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRGIIHLDGMLMLYRDF 653          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.480e-46
Identity = 101/300 (33.67%), Postives = 171/300 (57.00%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPD----WRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ GAD+  RD R+ + +    +    + +A + V  ML++S+P ER+ +E  S  ++AR LF         +   K+    D    WRL ++++  +C D + MV K+     D    R      YVV+M K+V ++R +      +D++G  +ARI+ +L++ + L+QQ +GE+A++P +DAR RLY+L  +R+V +QEVPKRADHNP+ T Y W++   ++ + V + +  ++  +R RRK     +KEL         +ND  K   D++ R+LDRLD A+L+LD  LM +  F
Sbjct:  375 LVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELF--------AVPAVKSALPKDSKDTWRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIARSDQLVEANDVAK--FDKLSRALDRLDRAVLQLDAMLMLYRDF 662          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 173 bits (438), Expect = 2.040e-45
Identity = 98/301 (32.56%), Postives = 173/301 (57.48%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPD-----WRLFVSWMAALCTDLTSMVSKIPGS--DPQNPR------YVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G  +  R+ R+ + +    +    + +A + V  MLE+S+P ER+ NE  SA +SAR L++           T  K +P      WRL ++++  +C D + M+ K+     D    R      YVV+M K+V++++ +      +DR+G  +ARI+ +L++ + L+Q+ +GE+A++P ++AR RLY+L  D++V +QE+PKRADHNP+ TF+ W++   Q+   + + +  ++  +R RR F    +KEL         ++D +K   D++ RSLDRLD A+++LD  LM F  F
Sbjct:  359 LVWRFGMTQMLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSARDLYNME---------TVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKELIARSEQLVEAHDLDK--FDKLSRSLDRLDRAIIQLDGMLMLFRDF 646          
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.050e-44
Identity = 89/297 (29.97%), Postives = 175/297 (58.92%), Query Frame = 0
Query:   39 VLWKLGADKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISARALFDKLCDTWRTINLTKNKKVPD-WRLFVSWMAALCTDLTSMVSKIPGSDPQ--------NPRYVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQVGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHDQVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLDQVRRSLDRLDTALLRLDENLMFFNTF 326
            ++W+ G D+  R+ R+++ +    +    + +A + V  ML  S   ER+ NEP S  ++AR ++ K+ +  + +     K++ D WRL ++++A +  D + M++++                +YVV+M  +  Y++ + +    +D++G ++ARI+ ++L+ + L+Q+ +GE+A++P ++AR RLY L +D+++ +QE+PKR+DHNP  T Y W++    + +V+ + +  ++  +R RR F+   +KEL    +     ND EK   D++ + LDRLD ++L+LDENLM +  F
Sbjct:  360 LVWRCGTDQLLRELRHDAFVRFAMENV--NHVAGVIVSAMLSYSMSHERESNEPTSFPMTAREIY-KVDEVKQALP----KEIKDTWRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEK--FDKLSQGLDRLDRSILQLDENLMLYRDF 647          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig155.95.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI9.880e-16174.85DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0W8C9C8_PHYNI7.980e-5134.67DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
G4Z0C0_PHYSP5.920e-5033.67DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
H3GD40_PHYRM9.140e-5033.45DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3R7FY14_9STRA8.630e-4933.45DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
A0A0P1AWK6_PLAHL1.050e-4833.78DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3M6VEE8_9STRA4.540e-4833.00DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A5D6XL36_9STRA3.480e-4633.67DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A484E8N6_BRELC2.040e-4532.56DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A024GFJ4_9STRA1.050e-4429.97DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 292..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 45..158
e-value: 3.8E-12
score: 48.8
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 159..248
e-value: 1.0E-27
score: 97.9
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 170..262
e-value: 3.0E-7
score: 30.3
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 37..326
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 167..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig155contigP-littoralis_Contig155:461876..472063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig155.95.1mRNA_P-littoralis_Contig155.95.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig155 461876..473125 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig155.95.1 ID=prot_P-littoralis_Contig155.95.1|Name=mRNA_P-littoralis_Contig155.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=327bp
MGGVFEEEGAEREGEGEGGFWPGGGGRGVGAGATVLDGVLWKLGADKFHR
DFRNNSLLGLVQDRFPKSKLAYLAVKVMLENSAPTERKVNEPVSASISAR
ALFDKLCDTWRTINLTKNKKVPDWRLFVSWMAALCTDLTSMVSKIPGSDP
QNPRYVVNMAKMVQYMRSSLVKCTARDRYGKETARIIEILLQNKFLDQQQ
VGEMAMIPPSDARERLYQLLKDRMVSVQEVPKRADHNPSTTFYLWTIKHD
QVAQVVLDTLYKAMLNMRLRRKFVYCNDKELFIHDAAARLSNDAEKERLD
QVRRSLDRLDTALLRLDENLMFFNTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR039748RPC3
IPR036390WH_DNA-bd_sf