prot_P-littoralis_Contig136.69.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig136.69.1
Unique Nameprot_P-littoralis_Contig136.69.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length683
Homology
BLAST of mRNA_P-littoralis_Contig136.69.1 vs. uniprot
Match: A0A6H5JIW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW0_9PHAE)

HSP 1 Score: 386 bits (992), Expect = 1.930e-121
Identity = 399/541 (73.75%), Postives = 433/541 (80.04%), Query Frame = 0
Query:  150 RPSADHMQELQRXXXXXEEQAKEAGLPIPPPVTGKGGRGKLLFPQSDSYRFVLHIRELTQDRNLSGVLSALSIAERKEGGVDAHGYNACIGGMAKAKRWADALELLSRMRAAGVAPNTHCYSNAIVACCRCGEHSHAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVEKSSRSPVIYNGVSVACGAAGKWEEALCALRLTVEGGMSPTFIAXXXXXXXXXXXXXXXHAQRLLKDMKR--ASKGGGGERENGNN------NSRFGSRLAAAREPLPPPDVYSYTSVIDACAKSGELGSALEVLEDMRRAGVSPSLVTFNTLIFRCGAGSGSSGQQGRGDWRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEWEKAAVFLKELWGSFGAGAKGAGAGAADPVLAQLTIIACGKANDWHAGLEVVRETERAGAPPDVALFNALIEALVARPQQP 682
            RP A H++EL+R     EE+A+E GLPIPPPVTGKGG+GKL+FPQSDSYRFVLHIR+LTQDRNLSGVLSALSIAERKEGGVD HGYNACIGGMAKAKRWADAL LLSRMRAAGVAPNTHC                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +SSRSP I+N V+ ACGAAG+WEEAL ALRLTV GGM+PTFIA   XXXXXXXXXXXXHA+RLLKDM++  +S    GE  + +N       +R  +R +  +E LPPPDVYSYTSVIDACAKSGE   AL+VLEDMRRA V PSLVT+N LI  CG  S +   +G  DWR  XXXXXXXXXXXXXXXXXXXXXXXXXX  GGEW +AA +LK L G  GAG  G      + V+AQLTI+ACGKANDW  GL+VVRE ER G  P V +FNALIEAL   PQQP
Sbjct:  143 RPPAKHIRELRRQQRLKEERAEEVGLPIPPPVTGKGGKGKLIFPQSDSYRFVLHIRQLTQDRNLSGVLSALSIAERKEGGVDVHGYNACIGGMAKAKRWADALSLLSRMRAAGVAPNTHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSRSPAIFNSVTAACGAAGRWEEALVALRLTVRGGMAPTFIAYNAXXXXXXXXXXXXHARRLLKDMQQRASSPSTRGEDSSDSNPGLRERRARGMARTSPRKERLPPPDVYSYTSVIDACAKSGERDRALKVLEDMRRAQVHPSLVTYNALILACGT-SDAKKPRGGSDWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGGEWGEAAAYLKGLRG--GAGKDG---WTRNGVVAQLTILACGKANDWKGGLQVVREMERLGVRPKVGVFNALIEALGVGPQQP 677          
BLAST of mRNA_P-littoralis_Contig136.69.1 vs. uniprot
Match: D7FSD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD8_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 2.390e-82
Identity = 327/449 (72.83%), Postives = 352/449 (78.40%), Query Frame = 0
Query:  242 MAKAKRWADALELLSRMRAAGVAPNTHCYSNAIVACCRCGEHSHAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVEKSSRSPVIYNGVSVACGAAGKWEEALCALRLTVEGGMSPTFIAXXXXXXXXXXXXXXXHAQRLLKDMKRASKG---GGGERENGN-----NNSRFGSRLAAAREPLPPPDVYSYTSVIDACAKSGELGSALEVLEDMRRAGVSPSLVTFNTLIFRCGAGSGSSGQQGRGDWRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEWEKAAVFLKELWGSFGAGAKGAGAGAADPVLAQLTIIACGKANDWHAGLEVVRETERAGAPPDVALFNALIEALVARPQQP 682
            MAKAKRWADAL LLSRMRAAGVAPNTHCYSNAI+ACCRCGE+ HAPL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +SSRSP I+N V+ ACGAAG+WEEAL ALRLT  GGM+PTFIA        XXXXX  HA+RLLKDM++ +     GGG+  + N       +R  +R +   E L PPDVYSYTSVIDACAKSGE   AL+VLEDMRRA V PSLVT+NTLI  CGAG  S    G  DWR  XXXXXXXXXXXXXXXXXXXXXXXXXXXX GEW +AA +LK L G       G    A + V+AQLTI+ACGKANDW  GL+VVRE ER G  P V +FNALIEAL   PQQP
Sbjct:    1 MAKAKRWADALSLLSRMRAAGVAPNTHCYSNAILACCRCGEYHHAPLLRREMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSRSPAIFNSVTAACGAAGRWEEALVALRLTARGGMAPTFIAYNATLGALXXXXXWKHARRLLKDMQQRASSPSTGGGDSSDSNPGLRERRARGLARTSPREERLRPPDVYSYTSVIDACAKSGERDRALKVLEDMRRAQVHPSLVTYNTLILACGAGD-SETPLGGSDWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWGEAAAYLKGLRGG-----AGKDRWARNGVVAQLTILACGKANDWKGGLQVVREMERLGVRPKVDVFNALIEALGVGPQQP 443          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.69.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIW0_9PHAE1.930e-12173.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSD8_ECTSI2.390e-8272.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..496
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..55
NoneNo IPR availablePANTHERPTHR47937:SF1PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEINcoord: 438..611
coord: 231..432
coord: 355..555
NoneNo IPR availablePANTHERPTHR47937:SF1PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEINcoord: 506..674
NoneNo IPR availablePANTHERPTHR47937PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEINcoord: 506..674
coord: 438..611
coord: 231..432
coord: 355..555
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 508..541
e-value: 1.7E-8
score: 32.1
coord: 339..368
e-value: 0.0014
score: 16.7
coord: 235..267
e-value: 1.1E-6
score: 26.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 339..367
e-value: 0.091
score: 13.0
coord: 447..473
e-value: 8.0E-4
score: 19.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 505..549
e-value: 3.3E-11
score: 43.2
coord: 231..279
e-value: 1.7E-8
score: 34.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 444..474
score: 8.900633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 506..540
score: 13.197463
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 231..265
score: 11.147699
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 336..370
score: 9.624079
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 309..497
e-value: 9.4E-32
score: 112.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 498..625
e-value: 8.3E-26
score: 93.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 192..308
e-value: 1.3E-15
score: 59.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:412251..415984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.69.1mRNA_P-littoralis_Contig136.69.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig136 412128..416808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig136.69.1 ID=prot_P-littoralis_Contig136.69.1|Name=mRNA_P-littoralis_Contig136.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=683bp
MISLARRRSGGCCCNVLIPSSLSSTARALVSHSWAPSNGGGSSAGGLTQE
HEQAATAAATAARRPVAADCRHGSTGSGSNRRGRRGTAVKNPGRSSPPWP
RLPPTKRGSWAATTTTSTARGRKSPTRRQQQQQRQQQQAPPRPQQQQQQR
PSADHMQELQRQQRQKEEQAKEAGLPIPPPVTGKGGRGKLLFPQSDSYRF
VLHIRELTQDRNLSGVLSALSIAERKEGGVDAHGYNACIGGMAKAKRWAD
ALELLSRMRAAGVAPNTHCYSNAIVACCRCGEHSHAPLLRREMALAGIPQ
TLTCYRLELEHFGNSGRWGAALRLLSELKAAGLTPDAKVYNGVLDAFAQS
KEWARASDILREMASAGHALHARSYRGLIVSAANAGKWRVAWRAFCEMTS
LGVEKSSRSPVIYNGVSVACGAAGKWEEALCALRLTVEGGMSPTFIAYNA
TLGALGKAGQWEHAQRLLKDMKRASKGGGGERENGNNNSRFGSRLAAARE
PLPPPDVYSYTSVIDACAKSGELGSALEVLEDMRRAGVSPSLVTFNTLIF
RCGAGSGSSGQQGRGDWRLALSFLEEMVKGGVRPDVYTLTVAVAACKAGG
EWEKAAVFLKELWGSFGAGAKGAGAGAADPVLAQLTIIACGKANDWHAGL
EVVRETERAGAPPDVALFNALIEALVARPQQP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf