prot_P-littoralis_Contig135.24.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig135.24.1
Unique Nameprot_P-littoralis_Contig135.24.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length246
Homology
BLAST of mRNA_P-littoralis_Contig135.24.1 vs. uniprot
Match: A0A6H5KSG2_9PHAE (Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG2_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 8.360e-98
Identity = 168/230 (73.04%), Postives = 180/230 (78.26%), Query Frame = 0
Query:    1 MAKNAAKKRRSGTRKVSKKLKNTFKYKKPDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPTANRAAVRSTPGGQLLEACEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYTAKLMAKHGLDHRAMTRDIKTNYNQLTLGQLRRMCDMLLSLGDDQRVVTVPERALKEAPDTAALSNPAAGGDSSGGNSGKKTAPATGT-------------VAMEVGEGSDDD 217
            MAKNAAKKRRSGTRKVSKKLKNTF+YKKPDISSAVVRE WD+NLTAETNMAKMGLRQSANRDIR  A RAA  + PGG+++E+CEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRY AKL++KHGLDH AM RDIK NYNQLTLGQLRRMCD LLSL ++QRVVT+PER   EA    A S  AAGG           A ATGT             VAMEVGE S DD
Sbjct:    1 MAKNAAKKRRSGTRKVSKKLKNTFRYKKPDISSAVVRERWDSNLTAETNMAKMGLRQSANRDIRAPARRAAASAAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLSKHGLDHEAMARDIKVNYNQLTLGQLRRMCDTLLSLDEEQRVVTLPERVANEA--AKAASRTAAGG----------AAAATGTSPCQSRRVSVSTPVAMEVGEASVDD 218          
BLAST of mRNA_P-littoralis_Contig135.24.1 vs. uniprot
Match: D8LSG8_ECTSI (Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG8_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.100e-69
Identity = 123/171 (71.93%), Postives = 136/171 (79.53%), Query Frame = 0
Query:   50 MAKMGLRQSANRDIRPTANRAAVRSTPGGQLLEACEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYTAKLMAKHGLDHRAMTRDIKTNYNQLTLGQLRRMCDMLLSLGDDQRVVTVPERALKEAPDTAALSNPAAGGDSSGGNSG---KKTAPATGTVAMEVGEGSDDD 217
            MAKMGLRQSANRDIR  A RAA  + PGG+++E+CEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRY AKL+ KHGLDH AMTRDIK NYNQLTLGQLRRMCD LLSLG++QRVVT+PER   EA  T A S  AAGG ++G  +G        A+  VAMEVGE S DD
Sbjct:    1 MAKMGLRQSANRDIRAPARRAAASAAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLTKHGLDHEAMTRDIKVNYNQLTLGQLRRMCDTLLSLGEEQRVVTLPERVANEA--TKAASTTAAGGTAAGTGTGPCHSGRVSASTPVAMEVGEESGDD 169          
BLAST of mRNA_P-littoralis_Contig135.24.1 vs. uniprot
Match: A0A7R9UCV7_9STRA (Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCV7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.200e-19
Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 0
Query:    6 AKKRRSGTRKVSKKLKNTFKYKKPDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPTANRAAVRSTPGGQLLEACEVSRL-FDVADTADLKVIDRNYGRRPMSDEDQRYTAKLMAKHGLDHRAMTRDIKTNYNQLTLGQLRRMCDMLLSLGDDQRVVTVPERALKEA 175
            +KKRRSG ++VS+K     K  +P ++   ++++WD  L    N+ ++GL  + N +          +ST  G  L A  +  + F     +D   +DRN  RRPMS+EDQRY AK M KHG D++AM  DI TN  Q T  +LR+M    L L   QR++ VP    +E+
Sbjct:   11 SKKRRSGRQRVSRK----NKIVRPVVTDRSLKKVWDEKLPPAENLKRVGLNFNVNGEF-------GRKSTKKGPKLVAETLQEVTFAEIPASDSLDVDRNPRRRPMSEEDQRYIAKQMKKHGKDYKAMFMDIDTNVMQYTEAKLRKMASRFLLLEGAQRLIPVPSEVAEES 170          
BLAST of mRNA_P-littoralis_Contig135.24.1 vs. uniprot
Match: A0A7S1XQN3_9STRA (Nucleolar protein 16 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQN3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.530e-17
Identity = 66/162 (40.74%), Postives = 89/162 (54.94%), Query Frame = 0
Query:    7 KKRRSGTRKVSKKLKNTFKYKKPDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPTANRAAVRSTPGGQLLEACEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYTAKLMAKHGLDHRAMTRDIKTNYNQLTLGQLRRMCDMLLSLGDDQRVVTVP 168
            KKRRSG RKVS+      K  K  ++   +R++WD  L A  N+ ++GL    N   RP A R+A    P      A EV+   DV  + DL    RN  R+ MS+ DQRY AK +AKHG +++ M  D++TN  Q T  QLR+M    L LG+ +R V VP
Sbjct:   56 KKRRSGRRKVSR----GNKVPKAKVTDHNLRKVWDEKLPAAVNLKRVGLTHDVN-GKRPAARRSAREGKPIAAATLA-EVT-FADVPASDDLDGF-RNPRRKAMSEADQRYIAKQLAKHGTEYKKMFMDVETNVMQYTETQLRKMASRFLLLGEHERDVPVP 209          
BLAST of mRNA_P-littoralis_Contig135.24.1 vs. uniprot
Match: A0A7S2VEB0_9STRA (Nucleolar protein 16 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEB0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.340e-8
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 0
Query:   29 PDISSAVVRELWDNNLTAETNMAKMGLRQSAN--RDIRPTANRAAV-RSTPGGQLLEACEVSRLFDV--ADTADLKVIDRNYGRRPMSDEDQRYTAKLMAKHGLDHRAMTRDIKTNYNQLTLGQLRRMCDMLLSLGDDQRVVTVPE 169
            P  +   +++ WD N++   N+ KMGL    N   + R ++ +  V +STP            LFD+  +D   L+       R P+ +E+++Y AK M KHG ++  M RD KTN  Q T   LR++    L L   QR V VPE
Sbjct:   33 PKFTDKRIKKNWDTNISPSANLVKMGLVALPNDLNNSRGSSTKVTVTQSTP----------IELFDIPESDRPSLR------SRYPLDEEEEKYIAKCMKKHGDNYLKMFRDTKTNDMQHTEQVLRKLGSRYLLLSPQQRRVEVPE 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.24.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KSG2_9PHAE8.360e-9873.04Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LSG8_ECTSI1.100e-6971.93Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosu... [more]
A0A7R9UCV7_9STRA1.200e-1936.84Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XQN3_9STRA2.530e-1740.74Nucleolar protein 16 n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2VEB0_9STRA4.340e-832.88Nucleolar protein 16 n=1 Tax=Amphiprora paludosa T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019002Ribosome biogenesis protein Nop16PFAMPF09420Nop16coord: 106..153
e-value: 1.5E-9
score: 38.2
coord: 7..62
e-value: 1.3E-6
score: 28.6
IPR019002Ribosome biogenesis protein Nop16PANTHERPTHR13243HSPC111 PROTEIN-RELATEDcoord: 1..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..245

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:108980..121862 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.24.1mRNA_P-littoralis_Contig135.24.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig135 108902..123311 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig135.24.1 ID=prot_P-littoralis_Contig135.24.1|Name=mRNA_P-littoralis_Contig135.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MAKNAAKKRRSGTRKVSKKLKNTFKYKKPDISSAVVRELWDNNLTAETNM
AKMGLRQSANRDIRPTANRAAVRSTPGGQLLEACEVSRLFDVADTADLKV
IDRNYGRRPMSDEDQRYTAKLMAKHGLDHRAMTRDIKTNYNQLTLGQLRR
MCDMLLSLGDDQRVVTVPERALKEAPDTAALSNPAAGGDSSGGNSGKKTA
PATGTVAMEVGEGSDDDEAGLEDSNKKTKKNKSKSSKNKKSGKPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019002Ribosome_biogenesis_Nop16