prot_P-littoralis_Contig1349.13.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1349.13.2
Unique Nameprot_P-littoralis_Contig1349.13.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length65
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1349.13.2 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.450e-7
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:    1 CSFEKVFGSVRGMLPATA-PGRNTPNLPRLDRYATALIPERLRHIWEAWFVETDGNCLWRALAKAL 65
            C++ KVFG+  G++P  A PG+        D  AT ++   LR  + A +VE DGNC WR++AKAL
Sbjct:   60 CTWPKVFGTPEGVVPTVARPGKGQE---MYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKAL 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1349.13.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE2.450e-742.42SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003323OTU domainPROSITEPS50802OTUcoord: 45..65
score: 9.421832

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1349contigP-littoralis_Contig1349:18324..19034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1349.13.2mRNA_P-littoralis_Contig1349.13.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig1349 18324..19035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1349.13.2 ID=prot_P-littoralis_Contig1349.13.2|Name=mRNA_P-littoralis_Contig1349.13.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
CSFEKVFGSVRGMLPATAPGRNTPNLPRLDRYATALIPERLRHIWEAWFV
ETDGNCLWRALAKAL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom