prot_P-littoralis_Contig131.15.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig131.15.1
Unique Nameprot_P-littoralis_Contig131.15.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length708
Homology
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Match: D7G3P5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P5_ECTSI)

HSP 1 Score: 412 bits (1059), Expect = 5.690e-133
Identity = 214/326 (65.64%), Postives = 241/326 (73.93%), Query Frame = 0
Query:   72 EFVVPPSIPTSGNKRPVCTVCLGPGKGSGSG--PFLSCRG--HTCNAQVHKNCYPVAVKTIEGHARNFMCNACDHETAEK-IPPKERGCVICRQTQGGQAIAMVPTHEGDFVHFLCLKKAVPDADNQWKFEKGKYVPPTGVAEALAKAKARRRCSECNRRGGVVKRCERQQCLTRFHPLCGAVVTVEVQMKIEGKGWKGLGADMTIQCDKHQQNADEPCSKCGGAEGEVVGCFKCPTYYHKGCHDPPIPDDQGEKWWCSTCNEALAMAGESSEDXXXXXXXXXXXXXXXXXXX-------------PEVGSPEHVGWLRRMTKRVE 379
            EFV PP IP    +  VCTVCLGPG G   G    L CRG   TC   VHKNCYPVAVKTI+G +  F+CNAC+ + +   + P+ERGCVICRQTQG +A AMVPT EG FVHFLC KK VPDA++ WKFE GKYVPP GV EALA+AKA+RRCSEC R GGVVK CERQ C TRFHPLCGAV+T E Q   EGK WKGLGADMTIQCD+H+  ADEPC+KCGG +GE+VGC +CPTYYHK CHDPPIPDD GEKWWC+TC  ALA        XXXXXXXXXXXXXXXXXXX             P  GSPEH+GW++RM K++E
Sbjct:  163 EFVAPPHIPGVAGRGRVCTVCLGPGGGKKGGGEALLECRGSNRTCKTLVHKNCYPVAVKTIDGRSGMFVCNACERDKSSGGVRPEERGCVICRQTQGVEAYAMVPTKEGGFVHFLCFKKVVPDAESHWKFENGKYVPPPGVPEALARAKAKRRCSECKRTGGVVKTCERQDCRTRFHPLCGAVLTAETQSSSEGKDWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKDCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPTPGSPEHIGWMKRMQKKME 488          
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Match: A0A6H5LEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 1.190e-126
Identity = 414/649 (63.79%), Postives = 444/649 (68.41%), Query Frame = 0
Query:   72 EFVVPPSIPTSGNKRPVCTVCLGPGKGSGSG--PFLSCRG--HTCNAQVHKNCYPVAVKTIEGHARNFMCNACDHE-TAEKIPPKERGCVICRQTQGGQAIAMVPTHEGDFVHFLCLKKAVPDADNQWKFEKGKYVPPTGVAEALAKAKARRRCSECNRRGGVVKRCERQQCLTRFHPLCGAVVTVEVQMKIEGKGWKGLGADMTIQCDKHQQNADEPCSKCGGAEGEVVGCFKCPTYYHKGCHDPPIPDDQGEKWWCSTCNEALAMAGESSEDXXXXXXXXXXXXXXXXXXX---------------PEVGSPEHVGWLRRMTKRVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXEIWGTMSTLPCKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSGLATKGEGXXXXXXXXXXXXERMEALEAMWSSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGDDGMATPGDGCRRRSSGK-KLRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIASASSVXXXXXXXXXAGKGTKQKVVRKRGWHIRNK---YTRVAKEARLSREKEARKRA 696
            EFV PP IP    +  VCTVCLGPG G   G    L CRG    C   VHKNCYPVAVKTI+G +  F+CNAC+ + +A  + P+ERGCVICRQTQG ++ AMVPT EGDFVH LC KKAVPDA++ WKF+ GKYVPP GV EALA+AKA+RRCSEC R GGVVK CERQ C TRFHPLCGAV+T E Q   EGK WKGLGADMTIQCD+H+  A    S+ G           CPTYYHKGCHDPPIPD+ GEKWWC+TC  ALAM       XXXXXXXXXXXXXXXXXXX               P  GSPEH+GW++RM K++E                                   S    KG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       ER EALEAMWSSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      K RTEAFSAVPVGAQAYFNSQAGVG LAVIPGGIA ASSV          GKG KQKVVRKRGWH RN+   YTRVAKE RL  E++ARKRA
Sbjct:  249 EFVAPPHIPGVAGRGRVCTVCLGPGGGKKGGGEALLECRGSNRNCKTLVHKNCYPVAVKTIDGRSGMFVCNACERDKSAGGVRPEERGCVICRQTQGVESYAMVPTKEGDFVHLLCFKKAVPDAESHWKFDNGKYVPPPGVPEALARAKAKRRCSECKRTGGVVKTCERQDCRTRFHPLCGAVLTAETQSSSEGKDWKGLGADMTIQCDEHKHKA----SQAG-----------CPTYYHKGCHDPPIPDNTGEKWWCATCTAALAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPTPGSPEHIGWMKRMQKKME--------------------------------AVKSAFMGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR------------------ERREALEAMWSSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSRTEAFSAVPVGAQAYFNSQAGVGMLAVIPGGIADASSVA--------GGKGAKQKVVRKRGWHARNREFLYTRVAKEGRLVDERDARKRA 824          
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Match: D8LDG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG9_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.090e-31
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 0
Query:  153 RGCVICRQT---------QGGQAIAMVPTHEGDFVHFLCLKKAVPDADNQWKF-EKGKYVPPTGVAEALAKAKARRRCSECNRRGGVVKRCERQQCLTRFHPLCGAVVTVEVQMKIEGKGWKGLGADMTIQCDKHQQNADE 283
            R C+ICR+             ++ AM+PTHEG+FVH+LC KKAV DA     F E G YVPPTGV  ALA+AK +R C EC+R GGVV  CE + C  RFHPLCGAV    VQ K + K WKGLG  +TIQC KH +  +E
Sbjct: 1293 RRCLICRRKGRDAKSYFITPAKSYAMIPTHEGNFVHYLCFKKAVQDAKVPSDFDEAGNYVPPTGVVGALARAKQKRHCHECDRPGGVVGCCEHEGCSARFHPLCGAVQAARVQRKHD-KQWKGLGPHLTIQCKKHLREVNE 1432          
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Match: D7G3P6_ECTSI (Origin recognition complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P6_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.850e-24
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 0
Query:  608 KLRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIASASSVXXXXXXXXXAGKGTKQKVVRKRGWHIRNKYTRVAKEARLSREKEARKRA 696
            K RTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIA+ASSV           K TKQKVVRKRGWH RN+YTRVAKE RL  E++ARKRA
Sbjct:   52 KSRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIANASSVAGC--------KSTKQKVVRKRGWHARNRYTRVAKEGRLVEERDARKRA 132          
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Match: A0A6H5KR34_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR34_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.430e-9
Identity = 49/140 (35.00%), Postives = 62/140 (44.29%), Query Frame = 0
Query:  153 RGCVICRQT---------QGGQAIAMVPTHEGDFVHFLCLKKAVPDADNQWKFEKGKYVPPTGVAEALAKAKARRRCSECNRRGGVVKRCERQQCLTRFHPLCGAVVTVEVQMKIEGKGWKGLGADMTIQCDKHQQNADE 283
            R C++C+Q             ++ +M+ THEG+FVH+LC KKAV DA+            P+   E                RG             RF PLCGAV    VQ K + K WKG G  MTIQC KH +  DE
Sbjct: 1027 RRCLVCQQRGRDAKSYSITPAKSYSMIATHEGNFVHYLCFKKAVRDAE-----------VPSDFDEV---------------RG-------------RFLPLCGAVQAARVQRKHD-KQWKGSGPHMTIQCKKHLREVDE 1126          
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Match: A0A250WZX1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZX1_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 6.710e-5
Identity = 43/174 (24.71%), Postives = 80/174 (45.98%), Query Frame = 0
Query:  104 FLSCRGHTCNAQVHKNCYPVAVKTIEGHARNFMCNACDHETAEKIPPKERGCVICRQTQGGQAIAMVPTHEGDFVHFLCLKKAVPDADNQWKFEKGKYVPPTGVAEALAKAKARRRCSECNRRGGVVKRCERQQCLTRFHPLCGAVVTVEVQMKIEGKGWKGLGADMTIQCDKH 277
             +SC   +C   VH++CY   +  +      +MC +C+H+   +  P+   C +C    G      +P  +  + H  C++  +P+       +  +  P  G+ +++ K +    C  C +R G   +C  QQC T +HPLCG +  ++++MK + +G   L       C KH
Sbjct:  378 LVSC--DSCGITVHQSCY--GIMDLPDVDDMWMCRSCEHKEEGQKQPQ---CCLCPVVGGALKPTSLPGSK-TWCHAACMQW-IPEVTTS---DFSRVEPIEGI-DSIQKERWELICCVCRQRMGAKIQC--QQCYTAYHPLCGRMAGLKMEMKEDPEGNGRL--QFLSYCPKH 534          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.15.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G3P5_ECTSI5.690e-13365.64PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5LEG7_9PHAE1.190e-12663.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG9_ECTSI1.090e-3153.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3P6_ECTSI2.850e-2476.40Origin recognition complex subunit 2 n=1 Tax=Ectoc... [more]
A0A6H5KR34_9PHAE7.430e-935.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A250WZX1_9CHLO6.710e-524.71Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 88..141
e-value: 7.4E-4
score: 28.8
coord: 219..278
e-value: 7.5
score: 7.5
coord: 284..328
e-value: 2.0E-7
score: 40.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 212..334
e-value: 1.2E-9
score: 40.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 55..152
e-value: 1.3E-5
score: 26.7
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 285..329
e-value: 5.0E-7
score: 29.5
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 282..330
score: 8.6089
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 86..143
score: 8.7246
NoneNo IPR availablePFAMPF13832zf-HC5HC2H_2coord: 155..277
e-value: 2.6E-10
score: 40.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 517..540
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..355
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..471
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 681..708
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 681..698
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..391
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 567..585
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 333..613
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 285..327
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 89..140
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 82..144
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 279..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:101627..114964 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.15.1mRNA_P-littoralis_Contig131.15.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig131 101627..114964 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig131.15.1 ID=prot_P-littoralis_Contig131.15.1|Name=mRNA_P-littoralis_Contig131.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=708bp
TEDAGFGVESGGGGGGGKHKAKAKAKGNGKGKGKGKIKEHADGRKKGLRA
AAAAANDDECDEEEETVEEEAEFVVPPSIPTSGNKRPVCTVCLGPGKGSG
SGPFLSCRGHTCNAQVHKNCYPVAVKTIEGHARNFMCNACDHETAEKIPP
KERGCVICRQTQGGQAIAMVPTHEGDFVHFLCLKKAVPDADNQWKFEKGK
YVPPTGVAEALAKAKARRRCSECNRRGGVVKRCERQQCLTRFHPLCGAVV
TVEVQMKIEGKGWKGLGADMTIQCDKHQQNADEPCSKCGGAEGEVVGCFK
CPTYYHKGCHDPPIPDDQGEKWWCSTCNEALAMAGESSEDDEEEQEQDQA
QAQEEDDPQPEVGSPEHVGWLRRMTKRVEKAAEEDDPQPEVGSPEHVGWM
QRMTKRVEEIWGTMSTLPCKGEGKGKGQAKTNTEAAAAAAAAAGNPSAST
ATATATATATAAPAATPSSKPNATEKRKRGSPSTQQKKQKQQQQELGPSE
AAKKKERKRKRKERRERSGLATKGEGGGGRKKRAAAARERMEALEAMWSS
GEEDGGWGGGGFSGSSDDDQGEEEEEEEERGVGGDDDFGDDGMATPGDGC
RRRSSGKKLRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIASASSVAAA
AATTAAAGKGTKQKVVRKRGWHIRNKYTRVAKEARLSREKEARKRAKGAR
GGGGSGRR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD